Published in Int Rev Cell Mol Biol on January 01, 2013
A biliverdin-binding cyanobacteriochrome from the chlorophyll d-bearing cyanobacterium Acaryochloris marina. Sci Rep (2015) 0.93
Genetically encoded optochemical probes for simultaneous fluorescence reporting and light activation of protein function with two-photon excitation. J Am Chem Soc (2014) 0.91
A knot in the protein structure - probing the near-infrared fluorescent protein iRFP designed from a bacterial phytochrome. FEBS J (2014) 0.86
Sensitivity of superfolder GFP to ionic agents. PLoS One (2014) 0.79
The quaternary structure of the recombinant bovine odorant-binding protein is modulated by chemical denaturants. PLoS One (2014) 0.79
GFP Loss-of-Function Mutations in Arabidopsis thaliana. G3 (Bethesda) (2015) 0.76
Structure and stability of recombinant bovine odorant-binding protein: III. Peculiarities of the wild type bOBP unfolding in crowded milieu. PeerJ (2016) 0.76
Structure and stability of recombinant bovine odorant-binding protein: II. Unfolding of the monomeric forms. PeerJ (2016) 0.75
Peculiarities of the Super-Folder GFP Folding in a Crowded Milieu. Int J Mol Sci (2016) 0.75
VMD: visual molecular dynamics. J Mol Graph (1996) 117.02
Green fluorescent protein as a marker for gene expression. Science (1994) 34.55
The green fluorescent protein. Annu Rev Biochem (1998) 34.17
Raster3D: photorealistic molecular graphics. Methods Enzymol (1997) 27.30
FACS-optimized mutants of the green fluorescent protein (GFP). Gene (1996) 24.12
Principles that govern the folding of protein chains. Science (1973) 23.40
A monomeric red fluorescent protein. Proc Natl Acad Sci U S A (2002) 21.56
Partitioning of lipid-modified monomeric GFPs into membrane microdomains of live cells. Science (2002) 18.89
A guide to choosing fluorescent proteins. Nat Methods (2005) 18.55
Crystal structure of the Aequorea victoria green fluorescent protein. Science (1996) 16.81
Fluorescent proteins from nonbioluminescent Anthozoa species. Nat Biotechnol (1999) 14.64
Wavelength mutations and posttranslational autoxidation of green fluorescent protein. Proc Natl Acad Sci U S A (1994) 10.50
The molecular structure of green fluorescent protein. Nat Biotechnol (1996) 9.63
Engineering and characterization of a superfolder green fluorescent protein. Nat Biotechnol (2005) 9.17
Improved green fluorescent protein by molecular evolution using DNA shuffling. Nat Biotechnol (1996) 7.94
Macromolecular crowding: biochemical, biophysical, and physiological consequences. Annu Rev Biophys Biomol Struct (1993) 7.79
Rapid protein-folding assay using green fluorescent protein. Nat Biotechnol (1999) 6.98
EosFP, a fluorescent marker protein with UV-inducible green-to-red fluorescence conversion. Proc Natl Acad Sci U S A (2004) 6.71
Regulated fast nucleocytoplasmic shuttling observed by reversible protein highlighting. Science (2004) 6.52
An optical marker based on the UV-induced green-to-red photoconversion of a fluorescent protein. Proc Natl Acad Sci U S A (2002) 6.37
Use of the green fluorescent protein and its mutants in quantitative fluorescence microscopy. Biophys J (1997) 6.26
Refined crystal structure of DsRed, a red fluorescent protein from coral, at 2.0-A resolution. Proc Natl Acad Sci U S A (2001) 6.06
The structure of the chromophore within DsRed, a red fluorescent protein from coral. Proc Natl Acad Sci U S A (2000) 5.88
Engineering of a monomeric green-to-red photoactivatable fluorescent protein induced by blue light. Nat Biotechnol (2006) 5.52
Structural basis for dual excitation and photoisomerization of the Aequorea victoria green fluorescent protein. Proc Natl Acad Sci U S A (1997) 4.99
Fluorescent proteins and their applications in imaging living cells and tissues. Physiol Rev (2010) 4.90
Chemical structure of the hexapeptide chromophore of the Aequorea green-fluorescent protein. Biochemistry (1993) 4.74
Consideration of the Possibility that the slow step in protein denaturation reactions is due to cis-trans isomerism of proline residues. Biochemistry (1975) 4.65
Novel chromophores and buried charges control color in mFruits. Biochemistry (2006) 4.64
Photoactivatable mCherry for high-resolution two-color fluorescence microscopy. Nat Methods (2009) 4.52
Photoswitchable cyan fluorescent protein for protein tracking. Nat Biotechnol (2004) 4.44
Understanding protein non-folding. Biochim Biophys Acta (2010) 4.33
Macromolecular crowding: an important but neglected aspect of the intracellular environment. Curr Opin Struct Biol (2001) 4.27
Function and structure of inherently disordered proteins. Curr Opin Struct Biol (2008) 4.19
Chaperone-mediated protein folding. Physiol Rev (1999) 3.73
Reversible denaturation of Aequorea green-fluorescent protein: physical separation and characterization of the renatured protein. Biochemistry (1982) 3.72
Semi-rational engineering of a coral fluorescent protein into an efficient highlighter. EMBO Rep (2005) 3.45
'Molten-globule state': a compact form of globular proteins with mobile side-chains. FEBS Lett (1983) 3.42
Design and implementation of bimolecular fluorescence complementation (BiFC) assays for the visualization of protein interactions in living cells. Nat Protoc (2006) 3.22
Implications of macromolecular crowding for protein assembly. Curr Opin Struct Biol (2000) 3.20
Directed evolution of a monomeric, bright and photostable version of Clavularia cyan fluorescent protein: structural characterization and applications in fluorescence imaging. Biochem J (2006) 3.20
Structural basis of spectral shifts in the yellow-emission variants of green fluorescent protein. Structure (1998) 3.15
Autofluorescent proteins with excitation in the optical window for intravital imaging in mammals. Chem Biol (2009) 3.11
Kindling fluorescent proteins for precise in vivo photolabeling. Nat Biotechnol (2003) 3.08
Renaturation of Aequorea gree-fluorescent protein. Biochem Biophys Res Commun (1981) 2.89
GFP-like proteins as ubiquitous metazoan superfamily: evolution of functional features and structural complexity. Mol Biol Evol (2004) 2.82
Exploring the energy landscape of GFP by single-molecule mechanical experiments. Proc Natl Acad Sci U S A (2004) 2.65
Near-infrared fluorescent proteins. Nat Methods (2010) 2.52
Supercharging proteins can impart unusual resilience. J Am Chem Soc (2007) 2.52
Diversity and evolution of the green fluorescent protein family. Proc Natl Acad Sci U S A (2002) 2.51
The molecular properties and applications of Anthozoa fluorescent proteins and chromoproteins. Nat Biotechnol (2004) 2.48
Quantitative analysis of gene expression with an improved green fluorescent protein. p6. Eur J Biochem (2000) 2.47
A strategy for the generation of non-aggregating mutants of Anthozoa fluorescent proteins. FEBS Lett (2002) 2.41
Conversion of red fluorescent protein into a bright blue probe. Chem Biol (2008) 2.39
Improved solubility of TEV protease by directed evolution. J Biotechnol (2005) 2.35
Data deposition and annotation at the worldwide protein data bank. Mol Biotechnol (2008) 2.30
Photo-induced peptide cleavage in the green-to-red conversion of a fluorescent protein. Mol Cell (2003) 2.28
Anisotropic deformation response of single protein molecules. Proc Natl Acad Sci U S A (2006) 2.28
Predicting intrinsic disorder in proteins: an overview. Cell Res (2009) 2.24
Structure and mechanism of the reversible photoswitch of a fluorescent protein. Proc Natl Acad Sci U S A (2005) 2.21
Universal strategies in research and drug discovery based on protein-fragment complementation assays. Nat Rev Drug Discov (2007) 2.20
Structural basis for reversible photobleaching of a green fluorescent protein homologue. Proc Natl Acad Sci U S A (2007) 2.14
A high-throughput screen for compounds that inhibit aggregation of the Alzheimer's peptide. ACS Chem Biol (2006) 2.09
Engineering soluble proteins for structural genomics. Nat Biotechnol (2002) 2.09
Kindling fluorescent protein from Anemonia sulcata: dark-state structure at 1.38 A resolution. Biochemistry (2005) 1.96
Denaturation and partial renaturation of a tightly tetramerized DsRed protein under mildly acidic conditions. FEBS Lett (2000) 1.88
Crystal structure of venus, a yellow fluorescent protein with improved maturation and reduced environmental sensitivity. J Biol Chem (2002) 1.87
Branching out of single-molecule fluorescence spectroscopy: challenges for chemistry and influence on biology. Angew Chem Int Ed Engl (2005) 1.86
Macromolecular crowding perturbs protein refolding kinetics: implications for folding inside the cell. EMBO J (2000) 1.81
Bright monomeric photoactivatable red fluorescent protein for two-color super-resolution sptPALM of live cells. J Am Chem Soc (2010) 1.81
A reversibly photoswitchable GFP-like protein with fluorescence excitation decoupled from switching. Nat Biotechnol (2011) 1.74
Revealing the bifurcation in the unfolding pathways of GFP by using single-molecule experiments and simulations. Proc Natl Acad Sci U S A (2007) 1.74
Green-fluorescent protein mutants with altered fluorescence excitation spectra. FEBS Lett (1995) 1.72
A photoswitchable orange-to-far-red fluorescent protein, PSmOrange. Nat Methods (2011) 1.69
Single-molecule spectroscopic methods. Curr Opin Struct Biol (2004) 1.69
Effect of pH on fluorescence of tryosine, tryptophan and related compounds. Biochem J (1959) 1.69
The Yin and Yang of protein folding. FEBS J (2005) 1.68
Structural characterization of IrisFP, an optical highlighter undergoing multiple photo-induced transformations. Proc Natl Acad Sci U S A (2008) 1.68
Generation of monomeric reversibly switchable red fluorescent proteins for far-field fluorescence nanoscopy. Biophys J (2008) 1.67
zFP538, a yellow-fluorescent protein from Zoanthus, contains a novel three-ring chromophore. Biochemistry (2005) 1.67
Protein expression systems for structural genomics and proteomics. Curr Opin Chem Biol (2003) 1.65
Accelerated alpha-synuclein fibrillation in crowded milieu. FEBS Lett (2002) 1.64
Ultrasensitive coincidence fluorescence detection of single DNA molecules. Anal Chem (2003) 1.60
From EosFP to mIrisFP: structure-based development of advanced photoactivatable marker proteins of the GFP-family. J Biophotonics (2011) 1.57
Monomeric fluorescent timers that change color from blue to red report on cellular trafficking. Nat Chem Biol (2009) 1.56
Sensitivity of the yellow variant of green fluorescent protein to halides and nitrate. Curr Biol (1999) 1.52
An enhanced monomeric blue fluorescent protein with the high chemical stability of the chromophore. PLoS One (2011) 1.51
Cooperation of enzymatic and chaperone functions of trigger factor in the catalysis of protein folding. EMBO J (1997) 1.49
Folding of green fluorescent protein and the cycle3 mutant. Biochemistry (2000) 1.48
Monomeric red fluorescent proteins with a large Stokes shift. Proc Natl Acad Sci U S A (2010) 1.47
Acid denaturation and refolding of green fluorescent protein. Biochemistry (2004) 1.46
Hue-shifted monomeric variants of Clavularia cyan fluorescent protein: identification of the molecular determinants of color and applications in fluorescence imaging. BMC Biol (2008) 1.45
Crystal structures of the luciferase and green fluorescent protein from Renilla reniformis. J Mol Biol (2007) 1.44
High stability of Discosoma DsRed as compared to Aequorea EGFP. Biochemistry (2003) 1.44
Red fluorescent protein with reversibly photoswitchable absorbance for photochromic FRET. Chem Biol (2010) 1.43
Mechanism and energetics of green fluorescent protein chromophore synthesis revealed by trapped intermediate structures. Proc Natl Acad Sci U S A (2003) 1.41
Crystal structures and mutational analysis of amFP486, a cyan fluorescent protein from Anemonia majano. Proc Natl Acad Sci U S A (2005) 1.40
Structural characterization of acylimine-containing blue and red chromophores in mTagBFP and TagRFP fluorescent proteins. Chem Biol (2010) 1.40
Stable intermediate states and high energy barriers in the unfolding of GFP. J Mol Biol (2007) 1.40
Base catalysis of chromophore formation in Arg96 and Glu222 variants of green fluorescent protein. J Biol Chem (2005) 1.40
Molecular mechanism of histone H3K4me3 recognition by plant homeodomain of ING2. Nature (2006) 7.52
Engineering of a monomeric green-to-red photoactivatable fluorescent protein induced by blue light. Nat Biotechnol (2006) 5.52
Photoactivatable mCherry for high-resolution two-color fluorescence microscopy. Nat Methods (2009) 4.52
Photoswitchable cyan fluorescent protein for protein tracking. Nat Biotechnol (2004) 4.44
Far-red fluorescent tags for protein imaging in living tissues. Biochem J (2009) 4.38
Innovation: Photoactivatable fluorescent proteins. Nat Rev Mol Cell Biol (2005) 4.37
Bright and stable near-infrared fluorescent protein for in vivo imaging. Nat Biotechnol (2011) 4.14
Intravital imaging of metastatic behavior through a mammary imaging window. Nat Methods (2008) 4.13
Near-infrared fluorescent proteins for multicolor in vivo imaging. Nat Methods (2013) 2.47
Conversion of red fluorescent protein into a bright blue probe. Chem Biol (2008) 2.39
Far-red fluorescent protein excitable with red lasers for flow cytometry and superresolution STED nanoscopy. Biophys J (2010) 2.13
Green fluorescent proteins are light-induced electron donors. Nat Chem Biol (2009) 1.85
Bright monomeric photoactivatable red fluorescent protein for two-color super-resolution sptPALM of live cells. J Am Chem Soc (2010) 1.81
Three-chromophore FRET microscopy to analyze multiprotein interactions in living cells. Nat Methods (2004) 1.74
Imaging biological structures with fluorescence photoactivation localization microscopy. Nat Protoc (2009) 1.70
Deep-tissue photoacoustic tomography of a genetically encoded near-infrared fluorescent probe. Angew Chem Int Ed Engl (2011) 1.70
A photoswitchable orange-to-far-red fluorescent protein, PSmOrange. Nat Methods (2011) 1.69
Setup and use of a two-laser multiphoton microscope for multichannel intravital fluorescence imaging. Nat Protoc (2011) 1.67
Monomeric fluorescent timers that change color from blue to red report on cellular trafficking. Nat Chem Biol (2009) 1.56
Modern fluorescent proteins and imaging technologies to study gene expression, nuclear localization, and dynamics. Curr Opin Cell Biol (2011) 1.55
An enhanced monomeric blue fluorescent protein with the high chemical stability of the chromophore. PLoS One (2011) 1.51
Far-red fluorescent tag for protein labelling. Biochem J (2002) 1.50
Targeting of the FYVE domain to endosomal membranes is regulated by a histidine switch. Proc Natl Acad Sci U S A (2005) 1.47
Nanoscale imaging of molecular positions and anisotropies. Nat Methods (2008) 1.47
Monomeric red fluorescent proteins with a large Stokes shift. Proc Natl Acad Sci U S A (2010) 1.47
High stability of Discosoma DsRed as compared to Aequorea EGFP. Biochemistry (2003) 1.44
Red fluorescent protein with reversibly photoswitchable absorbance for photochromic FRET. Chem Biol (2010) 1.43
Superresolution imaging of multiple fluorescent proteins with highly overlapping emission spectra in living cells. Biophys J (2011) 1.43
Structural characterization of acylimine-containing blue and red chromophores in mTagBFP and TagRFP fluorescent proteins. Chem Biol (2010) 1.40
The protein kingdom extended: ordered and intrinsically disordered proteins, their folding, supramolecular complex formation, and aggregation. Prog Biophys Mol Biol (2010) 1.38
Comparative studies on the structure and stability of fluorescent proteins EGFP, zFP506, mRFP1, "dimer2", and DsRed1. Biochemistry (2004) 1.34
A photoconvertible fluorescent reporter to track chaperone-mediated autophagy. Nat Commun (2011) 1.32
Engineering of bacterial phytochromes for near-infrared imaging, sensing, and light-control in mammals. Chem Soc Rev (2013) 1.31
Red fluorescent proteins: advanced imaging applications and future design. Angew Chem Int Ed Engl (2012) 1.25
Advances in engineering of fluorescent proteins and photoactivatable proteins with red emission. Curr Opin Chem Biol (2009) 1.24
Fluorescent proteins as biomarkers and biosensors: throwing color lights on molecular and cellular processes. Curr Protein Pept Sci (2008) 1.22
Far-red light photoactivatable near-infrared fluorescent proteins engineered from a bacterial phytochrome. Nat Commun (2013) 1.18
Photoactivation mechanism of PAmCherry based on crystal structures of the protein in the dark and fluorescent states. Proc Natl Acad Sci U S A (2009) 1.18
Directed molecular evolution to design advanced red fluorescent proteins. Nat Methods (2011) 1.17
An orange fluorescent protein with a large Stokes shift for single-excitation multicolor FCCS and FRET imaging. J Am Chem Soc (2012) 1.16
A near-infrared BiFC reporter for in vivo imaging of protein-protein interactions. Chem Biol (2013) 1.13
Engineering ESPT pathways based on structural analysis of LSSmKate red fluorescent proteins with large Stokes shift. J Am Chem Soc (2010) 1.12
pH-dependent binding of the Epsin ENTH domain and the AP180 ANTH domain to PI(4,5)P2-containing bilayers. J Mol Biol (2007) 1.11
Extended Stokes shift in fluorescent proteins: chromophore-protein interactions in a near-infrared TagRFP675 variant. Sci Rep (2013) 1.10
Molecular mechanism of membrane targeting by the GRP1 PH domain. J Lipid Res (2008) 1.09
Chromophore transformations in red fluorescent proteins. Chem Rev (2012) 1.08
Computational study of thioflavin T torsional relaxation in the excited state. J Phys Chem A (2007) 1.08
Understanding blue-to-red conversion in monomeric fluorescent timers and hydrolytic degradation of their chromophores. J Am Chem Soc (2010) 1.07
The first mutant of the Aequorea victoria green fluorescent protein that forms a red chromophore. Biochemistry (2008) 1.06
Synergy of photoacoustic and fluorescence flow cytometry of circulating cells with negative and positive contrasts. J Biophotonics (2012) 1.05
Unraveling multistate unfolding of rabbit muscle creatine kinase. Biochim Biophys Acta (2002) 1.03
Photocontrollable fluorescent proteins for superresolution imaging. Annu Rev Biophys (2014) 1.02
Membrane insertion of the FYVE domain is modulated by pH. Proteins (2009) 1.01
Rotational order-disorder structure of fluorescent protein FP480. Acta Crystallogr D Biol Crystallogr (2009) 0.99
Use of the phase diagram method to analyze the protein unfolding-refolding reactions: fishing out the "invisible" intermediates. J Proteome Res (2004) 0.96
Modern fluorescent proteins: from chromophore formation to novel intracellular applications. Biotechniques (2011) 0.96
Reevaluation of ANS binding to human and bovine serum albumins: key role of equilibrium microdialysis in ligand - receptor binding characterization. PLoS One (2012) 0.95
Solid state yellow and orange lasers for flow cytometry. Cytometry A (2008) 0.94
Thioflavin T as a molecular rotor: fluorescent properties of thioflavin T in solvents with different viscosity. J Phys Chem B (2008) 0.94
Guide to red fluorescent proteins and biosensors for flow cytometry. Methods Cell Biol (2011) 0.94
Fluorescence quantum yield of thioflavin T in rigid isotropic solution and incorporated into the amyloid fibrils. PLoS One (2010) 0.93
Natural photoreceptors as a source of fluorescent proteins, biosensors, and optogenetic tools. Annu Rev Biochem (2015) 0.92
Red fluorescent proteins: chromophore formation and cellular applications. Curr Opin Struct Biol (2012) 0.91
Stability and dynamics of the porcine odorant-binding protein. Biochemistry (2007) 0.91
Spectral properties of thioflavin T in solvents with different dielectric properties and in a fibril-incorporated form. J Proteome Res (2007) 0.91
New lasers for flow cytometry: filling the gaps. Nat Methods (2007) 0.91
Analyzing thioflavin T binding to amyloid fibrils by an equilibrium microdialysis-based technique. PLoS One (2012) 0.91
Insight into the common mechanism of the chromophore formation in the red fluorescent proteins: the elusive blue intermediate revealed. J Am Chem Soc (2012) 0.91
Differences in the pathways of proteins unfolding induced by urea and guanidine hydrochloride: molten globule state and aggregates. PLoS One (2010) 0.91
Interaction of thioflavin T with amyloid fibrils: stoichiometry and affinity of dye binding, absorption spectra of bound dye. J Phys Chem B (2011) 0.90
Interaction of thioflavin T with amyloid fibrils: fluorescence quantum yield of bound dye. J Phys Chem B (2012) 0.90
Hydrophobic interactions and ionic networks play an important role in thermal stability and denaturation mechanism of the porcine odorant-binding protein. Proteins (2008) 0.89
Understanding the role of Arg96 in structure and stability of green fluorescent protein. Proteins (2008) 0.89
A structural basis for reversible photoswitching of absorbance spectra in red fluorescent protein rsTagRFP. J Mol Biol (2012) 0.88
A new trend in the experimental methodology for the analysis of the thioflavin T binding to amyloid fibrils. Mol Neurobiol (2012) 0.87
The place of inactivated actin and its kinetic predecessor in actin folding-unfolding. Biochemistry (2002) 0.87
Hetero-oligomeric tagging diminishes non-specific aggregation of target proteins fused with Anthozoa fluorescent proteins. Biochem J (2003) 0.87
A knot in the protein structure - probing the near-infrared fluorescent protein iRFP designed from a bacterial phytochrome. FEBS J (2014) 0.86