Published in Front Microbiol on April 30, 2013
A role for Tn6029 in the evolution of the complex antibiotic resistance gene loci in genomic island 3 in enteroaggregative hemorrhagic Escherichia coli O104:H4. PLoS One (2015) 1.41
Integrons: past, present, and future. Microbiol Mol Biol Rev (2014) 1.23
Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution. ISME J (2014) 1.09
Public health evolutionary biology of antimicrobial resistance: priorities for intervention. Evol Appl (2014) 0.97
Genomic interplay in bacterial communities: implications for growth promoting practices in animal husbandry. Front Microbiol (2014) 0.84
Resistance gene pool to co-trimoxazole in non-susceptible Nocardia strains. Front Microbiol (2015) 0.81
Understanding the contribution of environmental factors in the spread of antimicrobial resistance. Environ Health Prev Med (2015) 0.76
Plasmid Detection, Characterization, and Ecology. Microbiol Spectr (2015) 0.75
Antibiotic resistance genes in food and gut (non-pathogenic) bacteria. Bad genes in good bugs. Front Microbiol (2015) 0.75
Genomic Microbial Epidemiology Is Needed to Comprehend the Global Problem of Antibiotic Resistance and to Improve Pathogen Diagnosis. Front Microbiol (2016) 0.75
Comparative genomic analysis of a multiple antimicrobial resistant enterotoxigenic E. coli O157 lineage from Australian pigs. BMC Genomics (2015) 0.75
Antibiotic resistance genes in an urban river as impacted by bacterial community and physicochemical parameters. Environ Sci Pollut Res Int (2017) 0.75
Multiple Antibiotic-Resistant, Extended Spectrum-β-Lactamase (ESBL)-Producing Enterobacteria in Fresh Seafood. Microorganisms (2017) 0.75
Enterotypes of the human gut microbiome. Nature (2011) 24.36
Pathogenic Escherichia coli. Nat Rev Microbiol (2004) 17.81
Characterization of a new metallo-beta-lactamase gene, bla(NDM-1), and a novel erythromycin esterase gene carried on a unique genetic structure in Klebsiella pneumoniae sequence type 14 from India. Antimicrob Agents Chemother (2009) 16.90
PCR mapping of integrons reveals several novel combinations of resistance genes. Antimicrob Agents Chemother (1995) 12.54
Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany. N Engl J Med (2011) 9.37
A novel family of potentially mobile DNA elements encoding site-specific gene-integration functions: integrons. Mol Microbiol (1989) 8.71
Sampling the antibiotic resistome. Science (2006) 7.27
Open-source genomic analysis of Shiga-toxin-producing E. coli O104:H4. N Engl J Med (2011) 7.11
Prospective genomic characterization of the German enterohemorrhagic Escherichia coli O104:H4 outbreak by rapid next generation sequencing technology. PLoS One (2011) 6.75
Multidrug-resistant Salmonella enterica serovar paratyphi A harbors IncHI1 plasmids similar to those found in serovar typhi. J Bacteriol (2007) 5.88
Antibiotic resistance is ancient. Nature (2011) 4.83
Functional characterization of the antibiotic resistance reservoir in the human microflora. Science (2009) 4.78
Food animals and antimicrobials: impacts on human health. Clin Microbiol Rev (2011) 4.15
Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype. Genome Res (2009) 3.99
The shared antibiotic resistome of soil bacteria and human pathogens. Science (2012) 3.98
High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity. Nat Rev Microbiol (2012) 3.94
Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011. Proc Natl Acad Sci U S A (2012) 3.42
Characterisation of integrons and antibiotic resistance genes in Danish multiresistant Salmonella enterica Typhimurium DT104. FEMS Microbiol Lett (1998) 3.41
Rapid detection and identification of metallo-beta-lactamase-encoding genes by multiplex real-time PCR assay and melt curve analysis. J Clin Microbiol (2006) 3.30
Characterization of variant Salmonella genomic island 1 multidrug resistance regions from serovars Typhimurium DT104 and Agona. Antimicrob Agents Chemother (2002) 3.02
Molecular epidemiology of antibiotic resistance genes in multiresistant epidemic Salmonella typhimurium DT 104. Microb Drug Resist (1998) 2.99
Gene cassettes and cassette arrays in mobile resistance integrons. FEMS Microbiol Rev (2009) 2.95
Epidemic salmonella typhimurium DT 104--a truly international multiresistant clone. J Antimicrob Chemother (2000) 2.47
Environmental contamination makes an important contribution to hospital infection. J Hosp Infect (2007) 2.37
PCR typing of genetic determinants for metallo-beta-lactamases and integrases carried by gram-negative bacteria isolated in Japan, with focus on the class 3 integron. J Clin Microbiol (2003) 2.35
The genomic island SGI1, containing the multiple antibiotic resistance region of Salmonella enterica serovar Typhimurium DT104 or variants of it, is widely distributed in other S. enterica serovars. J Bacteriol (2005) 2.26
Molecular characterization of integrons in Acinetobacter baumannii: description of a hybrid class 2 integron. Antimicrob Agents Chemother (2000) 2.25
Evidence of increasing antibiotic resistance gene abundances in archived soils since 1940. Environ Sci Technol (2010) 2.23
Outbreak of multidrug-resistant Pseudomonas aeruginosa colonization and infection secondary to imperfect intensive care unit room design. Infect Control Hosp Epidemiol (2009) 2.21
Detection of shiga-like toxin (stx1 and stx2), intimin (eaeA), and enterohemorrhagic Escherichia coli (EHEC) hemolysin (EHEC hlyA) genes in animal feces by multiplex PCR. Appl Environ Microbiol (1999) 2.20
Analysis of the resistome of a multidrug-resistant NDM-1-producing Escherichia coli strain by high-throughput genome sequencing. Antimicrob Agents Chemother (2011) 2.13
The genetics of Salmonella genomic island 1. Microbes Infect (2006) 2.11
Gut microbiota disturbance during antibiotic therapy: a multi-omic approach. Gut (2012) 2.10
A commensal gone bad: complete genome sequence of the prototypical enterotoxigenic Escherichia coli strain H10407. J Bacteriol (2010) 2.08
Antibiotic resistance gene spread due to manure application on agricultural fields. Curr Opin Microbiol (2011) 2.01
The large plasmids of Shiga-toxin-producing Escherichia coli (STEC) are highly variable genetic elements. Microbiology (1999) 1.97
The 120 592 bp IncF plasmid pRSB107 isolated from a sewage-treatment plant encodes nine different antibiotic-resistance determinants, two iron-acquisition systems and other putative virulence-associated functions. Microbiology (2005) 1.91
Proteus mirabilis clinical isolate harbouring a new variant of Salmonella genomic island 1 containing the multiple antibiotic resistance region. J Antimicrob Chemother (2006) 1.88
The evolution of class 1 integrons and the rise of antibiotic resistance. J Bacteriol (2008) 1.83
Identification and characterization of class 1 integrons in bacteria from an aquatic environment. J Antimicrob Chemother (1999) 1.80
A pathway for the evolution of the plasmid NTP16 involving the novel kanamycin resistance transposon Tn4352. Plasmid (1987) 1.79
Pyrosequencing of antibiotic-contaminated river sediments reveals high levels of resistance and gene transfer elements. PLoS One (2011) 1.74
Nucleotide sequence of the chromosomal region conferring multidrug resistance (R-type ASSuT) in Salmonella Typhimurium and monophasic Salmonella Typhimurium strains. J Antimicrob Chemother (2011) 1.73
Evidence of extensive interspecies transfer of integron-mediated antimicrobial resistance genes among multidrug-resistant Enterobacteriaceae in a clinical setting. J Infect Dis (2002) 1.72
Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2. PLoS One (2012) 1.72
Extended-spectrum β-lactamase-producing Escherichia coli from retail chicken meat and humans: comparison of strains, plasmids, resistance genes, and virulence factors. Clin Infect Dis (2012) 1.69
The role played by contaminated surfaces in the transmission of nosocomial pathogens. Infect Control Hosp Epidemiol (2011) 1.65
The emergence and spread of antibiotic resistance in food-borne bacteria. Int J Food Microbiol (2000) 1.64
Complete sequence of a novel 178-kilobase plasmid carrying bla(NDM-1) in a Providencia stuartii strain isolated in Afghanistan. Antimicrob Agents Chemother (2012) 1.60
Phenotypic and genotypic characterization of antimicrobial resistance in German Escherichia coli isolates from cattle, swine and poultry. J Antimicrob Chemother (2003) 1.55
Identification of enterohemorrhagic Escherichia coli O26:H- genes required for intestinal colonization in calves. Infect Immun (2005) 1.52
Advances in nucleic acid-based diagnostics of bacterial infections. Clin Chim Acta (2007) 1.46
Distribution of the blaTEM gene and blaTEM-containing transposons in commensal Escherichia coli. J Antimicrob Chemother (2011) 1.46
Association of IS26-composite transposons and complex In4-type integrons generates novel multidrug resistance loci in Salmonella genomic island 1. J Antimicrob Chemother (2008) 1.42
Distribution of intimin subtypes among Escherichia coli isolates from ruminant and human sources. J Clin Microbiol (2003) 1.40
Shiga toxin-producing Escherichia coli O104:H4: a new challenge for microbiology. Appl Environ Microbiol (2012) 1.39
blaNDM-1 is a chimera likely constructed in Acinetobacter baumannii. Antimicrob Agents Chemother (2012) 1.37
Multiple antibiotic resistance gene recruitment onto the enterohemorrhagic Escherichia coli virulence plasmid. FASEB J (2009) 1.36
Susceptibility of Danish Escherichia coli strains isolated from urinary tract infections and bacteraemia, and distribution of sul genes conferring sulphonamide resistance. J Antimicrob Chemother (2002) 1.35
Outbreak of haemolytic uraemic syndrome and bloody diarrhoea due to Escherichia coli O104:H4, south-west France, June 2011. Euro Surveill (2011) 1.31
Conjugative DNA transfer induces the bacterial SOS response and promotes antibiotic resistance development through integron activation. PLoS Genet (2010) 1.28
Class 1 integrons potentially predating the association with tn402-like transposition genes are present in a sediment microbial community. J Bacteriol (2006) 1.25
Virulence properties and serotypes of Shiga toxin-producing Escherichia coli from healthy Australian slaughter-age sheep. J Clin Microbiol (2001) 1.22
Sequence of closely related plasmids encoding bla(NDM-1) in two unrelated Klebsiella pneumoniae isolates in Singapore. PLoS One (2012) 1.20
The common ovine Shiga toxin 2-containing Escherichia coli serotypes and human isolates of the same serotypes possess a Stx2d toxin type. J Clin Microbiol (2001) 1.16
Ventilator-associated pneumonia and its prevention. Curr Opin Infect Dis (2012) 1.16
Antimicrobials as promoters of genetic variation. Curr Opin Microbiol (2012) 1.15
stx1c Is the most common Shiga toxin 1 subtype among Shiga toxin-producing Escherichia coli isolates from sheep but not among isolates from cattle. J Clin Microbiol (2003) 1.13
Identification of antimicrobial resistance and class 1 integrons in Shiga toxin-producing Escherichia coli recovered from humans and food animals. J Antimicrob Chemother (2005) 1.12
Hospital cleaning in the 21st century. Eur J Clin Microbiol Infect Dis (2011) 1.11
Evolution of transposons containing blaTEM genes. Antimicrob Agents Chemother (2005) 1.11
Detection of sul1, sul2 and sul3 in sulphonamide resistant Escherichia coli isolates obtained from healthy humans, pork and pigs in Denmark. Int J Food Microbiol (2005) 1.11
Transposons related to Tn1696 in IncHI2 plasmids in multiply antibiotic resistant Salmonella enterica serovar Typhimurium from Australian animals. Microb Drug Resist (2010) 1.08
Antimicrobial resistance of Escherichia coli O26, O103, O111, O128, and O145 from animals and humans. Emerg Infect Dis (2002) 1.06
Antibiotic resistance among verocytotoxigenic Escherichia coli (VTEC) and non-VTEC isolated from domestic animals and humans. J Med Microbiol (2003) 1.06
Distribution of class 1 integrons with IS26-mediated deletions in their 3'-conserved segments in Escherichia coli of human and animal origin. PLoS One (2010) 1.05
Gene cassettes encoding resistance to quaternary ammonium compounds: a role in the origin of clinical class 1 integrons? ISME J (2008) 1.05
Are humans increasing bacterial evolvability? Trends Ecol Evol (2012) 1.04
Integrons and gene cassettes: hotspots of diversity in bacterial genomes. Ann N Y Acad Sci (2012) 1.03
Dissemination of multiple drug resistance genes by class 1 integrons in Klebsiella pneumoniae isolates from four countries: a comparative study. Antimicrob Agents Chemother (2011) 1.03
Bovine feces from animals with gastrointestinal infections are a source of serologically diverse atypical enteropathogenic Escherichia coli and Shiga toxin-producing E. coli strains that commonly possess intimin. Appl Environ Microbiol (2005) 1.03
Genetic contexts of blaNDM-1. Antimicrob Agents Chemother (2012) 1.03
First report of New Delhi metallo-beta-lactamase-1-producing Klebsiella pneumoniae in Iran. Microb Drug Resist (2012) 1.02
Bovine non-O157 Shiga toxin 2-containing Escherichia coli isolates commonly possess stx2-EDL933 and/or stx2vhb subtypes. J Clin Microbiol (2003) 1.01
RSF1010-like plasmids in Australian Salmonella enterica serovar Typhimurium and origin of their sul2-strA-strB antibiotic resistance gene cluster. Microb Drug Resist (2010) 1.00
Retrospective application of transposon-directed insertion site sequencing to a library of signature-tagged mini-Tn5Km2 mutants of Escherichia coli O157:H7 screened in cattle. J Bacteriol (2011) 1.00
Context matters - the complex interplay between resistome genotypes and resistance phenotypes. Curr Opin Microbiol (2012) 0.98
Cross-transmission of multidrug-resistant Acinetobacter baumannii clonal strains causing episodes of sepsis in a trauma intensive care unit. Infect Control Hosp Epidemiol (2008) 0.98
Outbreak of Pseudomonas aeruginosa surgical site infections after arthroscopic procedures: Texas, 2009. Infect Control Hosp Epidemiol (2011) 0.98
Plasmid content of a clinically relevant Klebsiella pneumoniae clone from the Czech Republic producing CTX-M-15 and QnrB1. Antimicrob Agents Chemother (2012) 0.96
Genetic context and structural diversity of class 1 integrons from human commensal bacteria in a hospital intensive care unit. Antimicrob Agents Chemother (2011) 0.94
Characterization of antimicrobial resistance and class 1 and 2 integrons in Salmonella enterica isolates from different sources in Portugal. J Antimicrob Chemother (2006) 0.94
Serotypes and virulence gene profiles of shiga toxin-producing Escherichia coli strains isolated from feces of pasture-fed and lot-fed sheep. Appl Environ Microbiol (2004) 0.93
Enterohemorrhagic Escherichia coli specific enterohemolysin induced IL-1β in human macrophages and EHEC-induced IL-1β required activation of NLRP3 inflammasome. PLoS One (2012) 0.93
Non-O157 Shiga toxin-producing Escherichia coli in retail ground beef and pork in the Washington D.C. area. Food Microbiol (2012) 0.93
Virulence properties and serotypes of Shiga toxin-producing Escherichia coli from healthy Australian cattle. Appl Environ Microbiol (2002) 0.92
pJIE137 carrying blaCTX-M-62 is closely related to p271A carrying blaNDM-1. Antimicrob Agents Chemother (2012) 0.92
New sequence types and multidrug resistance among pathogenic Escherichia coli isolates from coastal marine sediments. Appl Environ Microbiol (2012) 0.90
Evolution of a multiple antibiotic resistance region in IncHI1 plasmids: reshaping resistance regions in situ. J Antimicrob Chemother (2012) 0.90
ACID: annotation of cassette and integron data. BMC Bioinformatics (2009) 0.93
Recovery of a functional class 2 integron from an Escherichia coli strain mediating a urinary tract infection. Antimicrob Agents Chemother (2008) 0.92
The genome of Clostridium difficile 5.3. Gut Pathog (2014) 0.88
MHJ_0125 is an M42 glutamyl aminopeptidase that moonlights as a multifunctional adhesin on the surface of Mycoplasma hyopneumoniae. Open Biol (2013) 0.85
A genomic island integrated into recA of Vibrio cholerae contains a divergent recA and provides multi-pathway protection from DNA damage. Environ Microbiol (2014) 0.81
First clinical case of a locally acquired carbapenem-resistant VIM-1 metallo-beta-lactamase in Pseudomonas aeruginosa in Australia. Med J Aust (2009) 0.81
Class 1 integron-associated spread of resistance regions in Pseudomonas aeruginosa: plasmid or chromosomal platforms? J Antimicrob Chemother (2012) 0.80