Published in J Proteome Res on May 31, 2013
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Optimization of mass spectrometry-compatible surfactants for shotgun proteomics. J Proteome Res (2007) 1.84
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Large-scale label-free quantitative proteomics of the pea aphid-Buchnera symbiosis. Mol Cell Proteomics (2011) 1.29
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On the benefits of acquiring peptide fragment ions at high measured mass accuracy. J Am Soc Mass Spectrom (2008) 1.17
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The importance of the digest: proteolysis and absolute quantification in proteomics. Methods (2011) 1.10
Proteomic analysis provides insights on venom processing in Conus textile. J Proteome Res (2010) 1.10
Comparison of Mascot and X!Tandem performance for low and high accuracy mass spectrometry and the development of an adjusted Mascot threshold. Mol Cell Proteomics (2008) 1.10
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Effect of mass spectrometric parameters on peptide and protein identification rates for shotgun proteomic experiments on an LTQ-orbitrap mass analyzer. Proteomics (2011) 1.08
Comparison between procedures using SDS for shotgun proteomic analyses of complex samples. Proteomics (2011) 1.08
Comparison of the LTQ-Orbitrap Velos and the Q-Exactive for proteomic analysis of 1-1000 ng RAW 264.7 cell lysate digests. Rapid Commun Mass Spectrom (2013) 1.08
Limitations and pitfalls in protein identification by mass spectrometry. Chem Rev (2007) 1.08
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A face in the crowd: recognizing peptides through database search. Mol Cell Proteomics (2011) 1.07
Technologies for plasma membrane proteomics. Proteomics (2010) 1.06
Trends in sample preparation for classical and second generation proteomics. J Chromatogr A (2007) 1.05
Assessment of resolution parameters for CID-based shotgun proteomic experiments on the LTQ-Orbitrap mass spectrometer. J Am Soc Mass Spectrom (2010) 1.05
Catch me if you can: mass spectrometry-based phosphoproteomics and quantification strategies. Proteomics (2011) 1.05
Improving proteome coverage on a LTQ-Orbitrap using design of experiments. J Am Soc Mass Spectrom (2011) 1.04
Comparison of different signal thresholds on data dependent sampling in Orbitrap and LTQ mass spectrometry for the identification of peptides and proteins in complex mixtures. J Am Soc Mass Spectrom (2009) 1.01
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Serum protein profiling by solid phase extraction and mass spectrometry: a future diagnostics tool? Proteomics (2009) 0.98
Protein digestion: an overview of the available techniques and recent developments. J Proteome Res (2013) 0.98
Efficient removal of detergents from proteins and peptides in a spin column format. Anal Biochem (2011) 0.96
Liquid-phase-based separation systems for depletion, prefractionation and enrichment of proteins in biological fluids and matrices for in-depth proteomics analysis--an update covering the period 2008-2011. Electrophoresis (2011) 0.95
From complementarity to comprehensiveness--targeting the membrane proteome of growing Bacillus subtilis by divergent approaches. Proteomics (2008) 0.93
Statistical design of experiments as a tool in mass spectrometry. J Mass Spectrom (2005) 0.92
Comparison of digestion protocols for microgram quantities of enriched protein samples. J Proteome Res (2007) 0.91
Overview on modern approaches to speed up protein identification workflows relying on enzymatic cleavage and mass spectrometry-based techniques. Anal Chim Acta (2009) 0.91
Perspectives of comprehensive phosphoproteome analysis using shotgun strategy. Anal Chem (2011) 0.90
Advances in phosphopeptide enrichment techniques for phosphoproteomics. Amino Acids (2012) 0.90
Phosphoproteomics: searching for a needle in a haystack. J Proteomics (2011) 0.89
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Analyzing protease specificity and detecting in vivo proteolytic events using tandem mass spectrometry. Proteomics (2010) 0.87
Accelerated digestion for high-throughput proteomics analysis of whole bacterial proteomes. J Microbiol Methods (2009) 0.85
Broad activation of the ubiquitin-proteasome system by Parkin is critical for mitophagy. Hum Mol Genet (2011) 4.41
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Cand1 promotes assembly of new SCF complexes through dynamic exchange of F box proteins. Cell (2013) 2.14
Cdc48/p97 mediates UV-dependent turnover of RNA Pol II. Mol Cell (2011) 1.91
Interactions of HIV-1 Gag with assembly cofactors. Biochemistry (2006) 1.83
Analysis of polyubiquitin conjugates reveals that the Rpn10 substrate receptor contributes to the turnover of multiple proteasome targets. Mol Cell Proteomics (2005) 1.65
Neamphamide A, a new HIV-inhibitory depsipeptide from the Papua New Guinea marine sponge Neamphius huxleyi. J Nat Prod (2004) 1.54
Mycobacterium tuberculosis produces pili during human infection. Proc Natl Acad Sci U S A (2007) 1.50
Structural basis for high-affinity binding of LEDGF PWWP to mononucleosomes. Nucleic Acids Res (2013) 1.37
Modulation of replication protein A function by its hyperphosphorylation-induced conformational change involving DNA binding domain B. J Biol Chem (2005) 1.29
The steady-state repertoire of human SCF ubiquitin ligase complexes does not require ongoing Nedd8 conjugation. Mol Cell Proteomics (2010) 1.24
An allosteric mechanism for inhibiting HIV-1 integrase with a small molecule. Mol Pharmacol (2009) 1.15
Mass spectrometric identification of lysines involved in the interaction of human replication protein a with single-stranded DNA. Biochemistry (2005) 1.14
Identification of an inhibitor-binding site to HIV-1 integrase with affinity acetylation and mass spectrometry. Proc Natl Acad Sci U S A (2004) 1.13
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Quantitative proteomic analysis of the secretory proteins from rat adipose cells using a 2D liquid chromatography-MS/MS approach. J Proteome Res (2005) 1.12
Effect of mass spectrometric parameters on peptide and protein identification rates for shotgun proteomic experiments on an LTQ-orbitrap mass analyzer. Proteomics (2011) 1.08
Lignans isolated from valerian: identification and characterization of a new olivil derivative with partial agonistic activity at A(1) adenosine receptors. J Nat Prod (2002) 1.06
Dopaminergic modulation of the hippocampal neuropil proteome identified by bioorthogonal noncanonical amino acid tagging (BONCAT). Proteomics (2012) 1.05
Characterization of the Mycobacterium tuberculosis proteome by liquid chromatography mass spectrometry-based proteomics techniques: a comprehensive resource for tuberculosis research. J Proteome Res (2011) 0.99
Preparation of stable isotope-labeled peripheral cannabinoid receptor CB2 by bacterial fermentation. Protein Expr Purif (2010) 0.95
Isolation of homodolastatin 16, a new cyclic depsipeptide from a Kenyan collection of Lyngbya majuscula. J Nat Prod (2003) 0.95
Mass spectrometric analysis of the HIV-1 integrase-pyridoxal 5'-phosphate complex reveals a new binding site for a nucleotide inhibitor. J Biol Chem (2004) 0.94
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The top-down, middle-down, and bottom-up mass spectrometry approaches for characterization of histone variants and their post-translational modifications. Proteomics (2013) 0.93
Quantitative, time-resolved proteomic analysis by combining bioorthogonal noncanonical amino acid tagging and pulsed stable isotope labeling by amino acids in cell culture. Mol Cell Proteomics (2014) 0.93
High resolution footprinting of the hepatitis C virus polymerase NS5B in complex with RNA. J Biol Chem (2007) 0.91
Genetic requirements for growth of Escherichia coli K12 on methyl-alpha-D-glucopyranoside and the five alpha-D-glucosyl-D-fructose isomers of sucrose. J Biol Chem (2006) 0.91
Analysis of a G protein-coupled receptor for neurotensin by liquid chromatography-electrospray ionization-mass spectrometry. Anal Biochem (2007) 0.87
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Prometastatic GPCR CD97 is a direct target of tumor suppressor microRNA-126. ACS Chem Biol (2013) 0.86
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Protein interaction profiling of the p97 adaptor UBXD1 points to a role for the complex in modulating ERGIC-53 trafficking. Mol Cell Proteomics (2012) 0.85
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Genes malh and pagl of Clostridium acetobutylicum ATCC 824 encode NAD+- and Mn2+-dependent phospho-alpha-glucosidase(s). J Biol Chem (2003) 0.83
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Activation of p107 by fibroblast growth factor, which is essential for chondrocyte cell cycle exit, is mediated by the protein phosphatase 2A/B55α holoenzyme. Mol Cell Biol (2013) 0.82
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Perturbations to the ubiquitin conjugate proteome in yeast δubx mutants identify Ubx2 as a regulator of membrane lipid composition. Mol Cell Proteomics (2013) 0.81
LogViewer: a software tool to visualize quality control parameters to optimize proteomics experiments using Orbitrap and LTQ-FT mass spectrometers. J Biomol Tech (2011) 0.81
Adipose proteome analysis: focus on mediators of insulin resistance. Expert Rev Proteomics (2008) 0.81
Data-dependent middle-down nano-liquid chromatography-electron capture dissociation-tandem mass spectrometry: an application for the analysis of unfractionated histones. Anal Chem (2013) 0.81
Proteomic characterization of thiazolidinedione regulation of obese adipose secretome in Zucker obese rats. Proteomics Clin Appl (2009) 0.81
The sim operon facilitates the transport and metabolism of sucrose isomers in Lactobacillus casei ATCC 334. J Bacteriol (2008) 0.81
Peptide fragmentation by corona discharge induced electrochemical ionization. J Am Soc Mass Spectrom (2010) 0.81
Engineered Aminoacyl-tRNA Synthetase for Cell-Selective Analysis of Mammalian Protein Synthesis. J Am Chem Soc (2016) 0.81
Recent proteomic advances in developmental, regeneration, and cancer governing signaling pathways. Proteomics (2014) 0.80
Mechanism of an ATP-independent protein disaggregase: I. structure of a membrane protein aggregate reveals a mechanism of recognition by its chaperone. J Biol Chem (2013) 0.79
Electron capture dissociation of hydrogen-deficient peptide radical cations. J Am Soc Mass Spectrom (2012) 0.79
Recent advances in defining the ubiquitylome. Expert Rev Proteomics (2014) 0.79
Structure of cyclized green fluorescent protein. Acta Crystallogr D Biol Crystallogr (2002) 0.78
ETD Outperforms CID and HCD in the Analysis of the Ubiquitylated Proteome. J Am Soc Mass Spectrom (2015) 0.78
A combined top-down and bottom-up MS approach for the characterization of hemoglobin variants in Rhesus monkeys. Proteomics (2010) 0.78
A corona discharge initiated electrochemical electrospray ionization technique. J Am Soc Mass Spectrom (2009) 0.77
Comprehensive profiling of N-linked glycosylation sites in HeLa cells using hydrazide enrichment. J Proteome Res (2012) 0.77
Plant annexins form calcium-independent oligomers in solution. Protein Sci (2002) 0.77
Oxidation of p53 through DNA charge transport involves a network of disulfides within the DNA-binding domain. Biochemistry (2015) 0.77
Endogenous retroviral insertion in Cryge in the mouse No3 cataract mutant. Genomics (2007) 0.77
Novel proteomic tools reveal essential roles of SRP and importance of proper membrane protein biogenesis. Mol Cell Proteomics (2011) 0.77
F-box protein FBXL16 binds PP2A-B55α and regulates differentiation of embryonic stem cells along the FLK1+ lineage. Mol Cell Proteomics (2014) 0.76
Solid-phase synthesis of thermolytic DNA oligonucleotides functionalized with a single 4-hydroxy-1-butyl or 4-phosphato-/thiophosphato-1-butyl thiophosphate protecting group. J Org Chem (2007) 0.75
A cationic cysteine-hydrazide as an enrichment tool for the mass spectrometric characterization of bacterial free oligosaccharides. Anal Bioanal Chem (2015) 0.75
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