Published in Phys Rev E Stat Nonlin Soft Matter Phys on April 08, 2013
Cyclic dominance in evolutionary games: a review. J R Soc Interface (2014) 1.08
Mesoscopic interactions and species coexistence in evolutionary game dynamics of cyclic competitions. Sci Rep (2014) 0.85
A double-edged sword: Benefits and pitfalls of heterogeneous punishment in evolutionary inspection games. Sci Rep (2015) 0.82
Biodiversity in models of cyclic dominance is preserved by heterogeneity in site-specific invasion rates. Sci Rep (2016) 0.79
Stochastic Evolution Dynamic of the Rock-Scissors-Paper Game Based on a Quasi Birth and Death Process. Sci Rep (2016) 0.75
A novel procedure for the identification of chaos in complex biological systems. Sci Rep (2017) 0.75
Emergence of unusual coexistence states in cyclic game systems. Sci Rep (2017) 0.75
Specificity and stability in topology of protein networks. Science (2002) 21.07
Modularity and extreme edges of the internet. Phys Rev Lett (2003) 3.34
Theoretical analysis of epigenetic cell memory by nucleosome modification. Cell (2007) 3.17
Stability puzzles in phage lambda. Phys Rev E Stat Nonlin Soft Matter Phys (2002) 2.25
Hierarchy measures in complex networks. Phys Rev Lett (2004) 1.76
Minimal model of spiky oscillations in NF-kappaB signaling. Proc Natl Acad Sci U S A (2006) 1.68
Toolbox model of evolution of prokaryotic metabolic networks and their regulation. Proc Natl Acad Sci U S A (2009) 1.60
Upstream plasticity and downstream robustness in evolution of molecular networks. BMC Evol Biol (2004) 1.36
Efficient degradation and expression prioritization with small RNAs. Phys Biol (2007) 1.33
Single-cell analysis of lambda immunity regulation. J Mol Biol (2003) 1.28
Genetic regulation of fluxes: iron homeostasis of Escherichia coli. Nucleic Acids Res (2006) 1.25
Signal integration in the galactose network of Escherichia coli. Mol Microbiol (2007) 1.25
Dynamic features of gene expression control by small regulatory RNAs. Proc Natl Acad Sci U S A (2009) 1.23
Scaling properties of European research units. Proc Natl Acad Sci U S A (2009) 1.18
Ribosome collisions and translation efficiency: optimization by codon usage and mRNA destabilization. J Mol Biol (2008) 1.15
Coexistence of phage and bacteria on the boundary of self-organized refuges. Proc Natl Acad Sci U S A (2012) 1.14
Combinatorics of feedback in cellular uptake and metabolism of small molecules. Proc Natl Acad Sci U S A (2007) 1.11
Computational architecture of the yeast regulatory network. Phys Biol (2005) 1.10
Conditional cooperativity in toxin-antitoxin regulation prevents random toxin activation and promotes fast translational recovery. Nucleic Acids Res (2012) 1.06
Protein interaction networks beyond artifacts. FEBS Lett (2002) 1.04
Why do phage play dice? J Virol (2009) 1.03
Analytical approach to continuous and intermittent bottleneck flows. Phys Rev Lett (2006) 1.02
Localization of denaturation bubbles in random DNA sequences. Proc Natl Acad Sci U S A (2003) 1.01
Spatial structure and Lamarckian adaptation explain extreme genetic diversity at CRISPR locus. MBio (2012) 0.99
The generation of promoter-mediated transcriptional noise in bacteria. PLoS Comput Biol (2008) 0.99
Targeted bacterial immunity buffers phage diversity. J Virol (2011) 0.98
Sustainability of virulence in a phage-bacterial ecosystem. J Virol (2010) 0.95
DNA supercoiling enhances cooperativity and efficiency of an epigenetic switch. Proc Natl Acad Sci U S A (2013) 0.95
Sensitivity of OR in phage lambda. Biophys J (2004) 0.95
Structure and function of negative feedback loops at the interface of genetic and metabolic networks. Nucleic Acids Res (2006) 0.93
Modelling transcriptional interference and DNA looping in gene regulation. J Mol Biol (2007) 0.93
Modeling the two-hybrid detector: experimental bias on protein interaction networks. Biophys J (2007) 0.92
Theory for the stability and regulation of epigenetic landscapes. Phys Biol (2010) 0.92
Quorum sensing regulation in Aeromonas hydrophila. J Mol Biol (2010) 0.92
Dominant negative autoregulation limits steady-state repression levels in gene networks. J Bacteriol (2009) 0.91
Direct and indirect effects in the regulation of overlapping promoters. Nucleic Acids Res (2011) 0.91
Functional alignment of regulatory networks: a study of temperate phages. PLoS Comput Biol (2005) 0.91
Relation of intracellular signal levels and promoter activities in the gal regulon of Escherichia coli. J Mol Biol (2009) 0.90
UV-induced mutagenesis in Escherichia coli SOS response: a quantitative model. PLoS Comput Biol (2007) 0.89
Network models of phage-bacteria coevolution. Phys Rev E Stat Nonlin Soft Matter Phys (2006) 0.88
Competition between diffusion and fragmentation: an important evolutionary process of nature. Phys Rev Lett (2003) 0.88
Ecosystems with mutually exclusive interactions self-organize to a state of high diversity. Phys Rev Lett (2011) 0.87
The functional half-life of an mRNA depends on the ribosome spacing in an early coding region. J Mol Biol (2011) 0.86
Variability-based sequence alignment identifies residues responsible for functional differences in alpha and beta tubulin. Protein Sci (2004) 0.86
Barriers and silencers: a theoretical toolkit for control and containment of nucleosome-based epigenetic states. J Mol Biol (2011) 0.84
Drying patterns: Sensitivity to residual stresses. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 0.84
Communication dynamics in finite capacity social networks. Phys Rev Lett (2012) 0.84
Modeling of the genetic switch of bacteriophage TP901-1: A heteromer of CI and MOR ensures robust bistability. J Mol Biol (2009) 0.84
Collaboration between CpG sites is needed for stable somatic inheritance of DNA methylation states. Nucleic Acids Res (2013) 0.83
Dynamical analysis on gene activity in the presence of repressors and an interfering promoter. Biophys J (2008) 0.83
Statistics of fracture surfaces. Phys Rev E Stat Nonlin Soft Matter Phys (2007) 0.82
Degree landscapes in scale-free networks. Phys Rev E Stat Nonlin Soft Matter Phys (2006) 0.82
Quantifying the benefits of translation regulation in the unfolded protein response. Phys Biol (2004) 0.82
Competition on the rocks: community growth and tessellation. PLoS One (2010) 0.82
Differentiation of developing olfactory neurons analysed in terms of coupled epigenetic landscapes. Nucleic Acids Res (2013) 0.82
Multiple roles of heparin in the aggregation of p25α. J Mol Biol (2012) 0.82
Minimal gene regulatory circuits for a lysis-lysogeny choice in the presence of noise. PLoS One (2010) 0.81
Conditional cooperativity of toxin - antitoxin regulation can mediate bistability between growth and dormancy. PLoS Comput Biol (2013) 0.81
Detection of topological patterns in protein networks. Genet Eng (N Y) (2004) 0.81
Clonal selection prevents tragedy of the commons when neighbors compete in a rock-paper-scissors game. Phys Rev E Stat Nonlin Soft Matter Phys (2012) 0.81
Spreading of multiple epidemics with cross immunization. Phys Rev E Stat Nonlin Soft Matter Phys (2012) 0.80
Spreading out of perturbations in reversible reaction networks. New J Phys (2007) 0.80
Dynamics of uptake and metabolism of small molecules in cellular response systems. PLoS One (2009) 0.80
Longevity of orders is related to the longevity of their constituent genera rather than genus richness. Theory Biosci (2008) 0.80
Modeling the spatial dynamics of culture spreading in the presence of cultural strongholds. Phys Rev E Stat Nonlin Soft Matter Phys (2011) 0.79
Emergence of diversity in a model ecosystem. Phys Rev E Stat Nonlin Soft Matter Phys (2012) 0.78
Specific contacts of the -35 region of the galP1 promoter by RNA polymerase inhibit GalR-mediated DNA looping repression. Nucleic Acids Res (2012) 0.77
Information spreading and development of cultural centers. Phys Rev E Stat Nonlin Soft Matter Phys (2012) 0.77
Short-range growth inhibitory signals from the epithelium can drive non-stereotypic branching in the pancreas. Phys Biol (2016) 0.76
Genetic regulatory networks that count to 3. J Theor Biol (2013) 0.76
One hub-one process: a tool based view on regulatory network topology. BMC Syst Biol (2008) 0.75
Key players in the genetic switch of bacteriophage TP901-1. Biophys J (2011) 0.75
Protein localization with flexible DNA or RNA. PLoS One (2012) 0.75
Locally self-organized quasicritical percolation in a multiple-disease model. Phys Rev E Stat Nonlin Soft Matter Phys (2011) 0.75
Void formation and roughening in slow fracture. Phys Rev E Stat Nonlin Soft Matter Phys (2005) 0.75
Dynamics of the recovery from sRNA-mediated gene silencing. Cell Cycle (2009) 0.75
Stress field around arbitrarily shaped cracks in two-dimensional elastic materials. Phys Rev E Stat Nonlin Soft Matter Phys (2004) 0.75
Branching instabilities in rapid fracture: dynamics and geometry. Phys Rev E Stat Nonlin Soft Matter Phys (2005) 0.75
Organizational structure and communication networks in a university environment. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 0.75
Visualization of large-scale correlations in gene expressions. Funct Integr Genomics (2004) 0.75
Roughening of fracture surfaces: the role of plastic deformation. Phys Rev Lett (2004) 0.75
Quality control system response to stochastic growth of amyloid fibrils. FEBS Lett (2013) 0.75
Modeling dynamics of information networks. Phys Rev Lett (2003) 0.75
Thermodynamics and roughening of solid-solid interfaces. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 0.75
Diffusion, fragmentation, and coagulation processes: analytical and numerical results. Phys Rev E Stat Nonlin Soft Matter Phys (2005) 0.75
Multifractal structure of the harmonic measure of diffusion-limited aggregates. Phys Rev E Stat Nonlin Soft Matter Phys (2002) 0.75
Scaling exponent of the maximum growth probability in diffusion-limited aggregation. Phys Rev E Stat Nonlin Soft Matter Phys (2003) 0.75
Rotation-induced grain growth and stagnation in phase-field crystal models. Phys Rev E Stat Nonlin Soft Matter Phys (2013) 0.75