Published in Environ Sci Technol on June 10, 2013
Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature (2004) 20.20
Virus population dynamics and acquired virus resistance in natural microbial communities. Science (2008) 5.54
Experimental factors affecting PCR-based estimates of microbial species richness and evenness. ISME J (2010) 4.15
Community proteomics of a natural microbial biofilm. Science (2005) 3.97
Community-wide analysis of microbial genome sequence signatures. Genome Biol (2009) 3.96
Rapidly evolving CRISPRs implicated in acquired resistance of microorganisms to viruses. Environ Microbiol (2007) 3.89
Fermentation, hydrogen, and sulfur metabolism in multiple uncultivated bacterial phyla. Science (2012) 3.39
Microbial communities in acid mine drainage. FEMS Microbiol Ecol (2003) 3.03
Microbial polysaccharides template assembly of nanocrystal fibers. Science (2004) 2.88
Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization. Genome Res (2012) 2.81
Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria. Nature (2007) 2.53
Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Science (2013) 2.51
Analysis of streptococcal CRISPRs from human saliva reveals substantial sequence diversity within and between subjects over time. Genome Res (2010) 2.46
The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria. Elife (2013) 2.36
EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data. Genome Biol (2011) 2.33
De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities. ISME J (2011) 2.14
Enigmatic, ultrasmall, uncultivated Archaea. Proc Natl Acad Sci U S A (2010) 2.12
Strain-resolved community genomic analysis of gut microbial colonization in a premature infant. Proc Natl Acad Sci U S A (2010) 2.09
Microscopic evidence for liquid-liquid separation in supersaturated CaCO3 solutions. Science (2013) 2.03
AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature. ISME J (2010) 1.95
Community genomics in microbial ecology and evolution. Nat Rev Microbiol (2005) 1.87
Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) bacteria in acid mine drainage biofilms. Appl Environ Microbiol (2009) 1.86
In situ evolutionary rate measurements show ecological success of recently emerged bacterial hybrids. Science (2012) 1.86
Environmental risks of nanotechnology: National Nanotechnology Initiative funding, 2000-2004. Environ Sci Technol (2006) 1.84
Systems biology: Functional analysis of natural microbial consortia using community proteomics. Nat Rev Microbiol (2009) 1.81
Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation. PLoS Biol (2008) 1.80
Extraordinary phylogenetic diversity and metabolic versatility in aquifer sediment. Nat Commun (2013) 1.80
Lineages of acidophilic archaea revealed by community genomic analysis. Science (2006) 1.70
Small genomes and sparse metabolisms of sediment-associated bacteria from four candidate phyla. MBio (2013) 1.70
Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling. Microbiome (2013) 1.69
Genome dynamics in a natural archaeal population. Proc Natl Acad Sci U S A (2007) 1.68
Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal. ISME J (2008) 1.60
Microbial populations stimulated for hexavalent uranium reduction in uranium mine sediment. Appl Environ Microbiol (2003) 1.58
Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities. Proc Natl Acad Sci U S A (2010) 1.58
Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland. ISME J (2009) 1.58
Geomicrobiology: how molecular-scale interactions underpin biogeochemical systems. Science (2002) 1.55
Strong bias in the bacterial CRISPR elements that confer immunity to phage. Nat Commun (2013) 1.55
Nanometre-size products of uranium bioreduction. Nature (2002) 1.54
Direction-specific interactions control crystal growth by oriented attachment. Science (2012) 1.47
Architecture and gene repertoire of the flexible genome of the extreme acidophile Acidithiobacillus caldus. PLoS One (2013) 1.47
Proteogenomic monitoring of Geobacter physiology during stimulated uranium bioremediation. Appl Environ Microbiol (2009) 1.45
Water-driven structure transformation in nanoparticles at room temperature. Nature (2003) 1.45
The dynamic genetic repertoire of microbial communities. FEMS Microbiol Rev (2008) 1.42
Microbiology. Genomes from metagenomics. Science (2013) 1.40
Extracellular proteins limit the dispersal of biogenic nanoparticles. Science (2007) 1.40
Genome-directed isolation of the key nitrogen fixer Leptospirillum ferrodiazotrophum sp. nov. from an acidophilic microbial community. Appl Environ Microbiol (2005) 1.35
Genetic exchange across a species boundary in the archaeal genus ferroplasma. Genetics (2007) 1.35
Population genomics in natural microbial communities. Trends Ecol Evol (2006) 1.34
Persisting viral sequences shape microbial CRISPR-based immunity. PLoS Comput Biol (2012) 1.32
Assembly-driven community genomics of a hypersaline microbial ecosystem. PLoS One (2013) 1.32
Metabolically active eukaryotic communities in extremely acidic mine drainage. Appl Environ Microbiol (2004) 1.30
Tetraether-linked membrane monolayers in Ferroplasma spp: a key to survival in acid. Extremophiles (2004) 1.30
Three-dimensional analysis of the structure and ecology of a novel, ultra-small archaeon. ISME J (2008) 1.29
Natural acidophilic biofilm communities reflect distinct organismal and functional organization. ISME J (2008) 1.27
Glycogen-accumulating organisms in laboratory-scale and full-scale wastewater treatment processes. Microbiology (2002) 1.26
Nanoparticles: strained and stiff. Science (2004) 1.21
Extremely acidophilic protists from acid mine drainage host Rickettsiales-lineage endosymbionts that have intervening sequences in their 16S rRNA genes. Appl Environ Microbiol (2003) 1.19
Uranium 238U/235U isotope ratios as indicators of reduction: results from an in situ biostimulation experiment at Rifle, Colorado, U.S.A. Environ Sci Technol (2010) 1.19
Strainer: software for analysis of population variation in community genomic datasets. BMC Bioinformatics (2007) 1.16
Phage mutations in response to CRISPR diversification in a bacterial population. Environ Microbiol (2012) 1.15
In situ long-term reductive bioimmobilization of Cr(VI) in groundwater using hydrogen release compound. Environ Sci Technol (2008) 1.12
Influence of heterogeneous ammonium availability on bacterial community structure and the expression of nitrogen fixation and ammonium transporter genes during in situ bioremediation of uranium-contaminated groundwater. Environ Sci Technol (2009) 1.09
Cultivating the uncultivated: a community genomics perspective. Trends Microbiol (2005) 1.08
Cytochrome 572 is a conspicuous membrane protein with iron oxidation activity purified directly from a natural acidophilic microbial community. ISME J (2008) 1.07
Cultivation and quantitative proteomic analyses of acidophilic microbial communities. ISME J (2009) 1.07
Phage-induced expression of CRISPR-associated proteins is revealed by shotgun proteomics in Streptococcus thermophilus. PLoS One (2012) 1.07
Imaging hydrated microbial extracellular polymers: comparative analysis by electron microscopy. Appl Environ Microbiol (2010) 1.07
Short-read assembly of full-length 16S amplicons reveals bacterial diversity in subsurface sediments. PLoS One (2013) 1.06
Dynamic viral populations in hypersaline systems as revealed by metagenomic assembly. Appl Environ Microbiol (2012) 1.06
Characterization of extracellular polymeric substances from acidophilic microbial biofilms. Appl Environ Microbiol (2010) 1.06
Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation. Environ Microbiol (2008) 1.05
Proteome changes in the initial bacterial colonist during ecological succession in an acid mine drainage biofilm community. Environ Microbiol (2011) 1.04
Characterization of titanium dioxide nanoparticles using molecular dynamics simulations. J Phys Chem B (2005) 1.04
A novel three-unit tRNA splicing endonuclease found in ultrasmall Archaea possesses broad substrate specificity. Nucleic Acids Res (2011) 1.04
Analysis of biostimulated microbial communities from two field experiments reveals temporal and spatial differences in proteome profiles. Environ Sci Technol (2010) 1.04
Variably saturated flow and multicomponent biogeochemical reactive transport modeling of a uranium bioremediation field experiment. J Contam Hydrol (2011) 1.04
Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community. ISME J (2012) 1.03
Characterization of cytochrome 579, an unusual cytochrome isolated from an iron-oxidizing microbial community. Appl Environ Microbiol (2008) 1.03
A semi-quantitative, synteny-based method to improve functional predictions for hypothetical and poorly annotated bacterial and archaeal genes. PLoS Comput Biol (2011) 1.02
High-density PhyloChip profiling of stimulated aquifer microbial communities reveals a complex response to acetate amendment. FEMS Microbiol Ecol (2012) 1.02
Geophysical monitoring of coupled microbial and geochemical processes during stimulated subsurface bioremediation. Environ Sci Technol (2009) 1.01
A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry. BMC Bioinformatics (2010) 0.99
Ecological distribution and population physiology defined by proteomics in a natural microbial community. Mol Syst Biol (2010) 0.99
Geophysical imaging of stimulated microbial biomineralization. Environ Sci Technol (2005) 0.99
Comparative genomics in acid mine drainage biofilm communities reveals metabolic and structural differentiation of co-occurring archaea. BMC Genomics (2013) 0.98
Insights into the diversity of eukaryotes in acid mine drainage biofilm communities. Appl Environ Microbiol (2009) 0.98