Published in PLoS One on May 31, 2013
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol (2006) 14.24
Evaluation of specific ultraviolet absorbance as an indicator of the chemical composition and reactivity of dissolved organic carbon. Environ Sci Technol (2003) 5.62
probeBase--an online resource for rRNA-targeted oligonucleotide probes: new features 2007. Nucleic Acids Res (2006) 3.98
Empirical approaches to metacommunities: a review and comparison with theory. Trends Ecol Evol (2011) 3.49
Microbial stress-response physiology and its implications for ecosystem function. Ecology (2007) 3.35
A global network of coexisting microbes from environmental and whole-genome sequence data. Genome Res (2010) 2.85
The power of species sorting: local factors drive bacterial community composition over a wide range of spatial scales. Proc Natl Acad Sci U S A (2007) 2.68
Geographic and environmental sources of variation in lake bacterial community composition. Appl Environ Microbiol (2005) 2.68
Taxonomic position of aromatic-degrading denitrifying pseudomonad strains K 172 and KB 740 and their description as new members of the genera Thauera, as Thauera aromatica sp. nov., and Azoarcus, as Azoarcus evansii sp. nov., respectively, members of the beta subclass of the Proteobacteria. Int J Syst Bacteriol (1995) 2.56
Identification of and spatio-temporal differences between microbial assemblages from two neighboring sulfurous lakes: comparison by microscopy and denaturing gradient gel electrophoresis. Appl Environ Microbiol (2000) 2.51
Bacterioplankton community shifts in an arctic lake correlate with seasonal changes in organic matter source. Appl Environ Microbiol (2003) 2.48
Environmental controls on the landscape-scale biogeography of stream bacterial communities. Ecology (2007) 1.76
Variation in dissolved organic matter controls bacterial production and community composition. Ecology (2006) 1.76
Diversity and seasonal dynamics of Actinobacteria populations in four lakes in northeastern Germany. Appl Environ Microbiol (2006) 1.69
Relationship between bacterial community composition and bottom-up versus top-down variables in four eutrophic shallow lakes. Appl Environ Microbiol (2002) 1.60
Microbiology. Exploring microbial diversity--a vast below. Science (2005) 1.56
High predictability of the seasonal dynamics of a species-like Polynucleobacter population in a freshwater lake. Environ Microbiol (2006) 1.56
Viability and potential for immigration of airborne bacteria from Africa that reach high mountain lakes in Europe. Environ Microbiol (2009) 1.43
Microheterogeneity in 16S ribosomal DNA-defined bacterial populations from a stratified planktonic environment is related to temporal changes and to ecological adaptations. Appl Environ Microbiol (2002) 1.42
Regional invariance among microbial communities. Ecol Lett (2009) 1.41
Ubiquity of Polynucleobacter necessarius ssp. asymbioticus in lentic freshwater habitats of a heterogeneous 2000 km area. Environ Microbiol (2009) 1.17
The microbial diversity of inland waters. Curr Opin Biotechnol (2006) 1.14
Links between resources, C metabolism and the major components of bacterioplankton community structure across a range of freshwater ecosystems. Environ Microbiol (2009) 1.12
Novelty and spatio-temporal heterogeneity in the bacterial diversity of hypersaline Lake Tebenquiche (Salar de Atacama). Extremophiles (2008) 1.11
Taxonomic characterization of denitrifying bacteria that degrade aromatic compounds and description of Azoarcus toluvorans sp. nov. and Azoarcus toluclasticus sp. nov. Int J Syst Bacteriol (1999) 1.10
Architectural differentiation reflects bacterial community structure in stream biofilms. ISME J (2009) 1.09
Bacterial communities associated with benthic organic matter in headwater stream microhabitats. Environ Microbiol (2005) 1.07
Temporal variability in the diversity and composition of stream bacterioplankton communities. Environ Microbiol (2012) 1.03
Euxinic freshwater hypolimnia promote bacterial endemicity in continental areas. Microb Ecol (2010) 1.01
Colonization of overlaying water by bacteria from dry river sediments. Environ Microbiol (2008) 0.97
Responses of benthic bacteria to experimental drying in sediments from Mediterranean temporary rivers. Microb Ecol (2007) 0.97
Bacterial 'cosmopolitanism' and importance of local environmental factors for community composition in remote high-altitude lakes. Freshw Biol (2009) 0.95
Simple method for determination of biodegradable dissolved organic carbon in water. Appl Environ Microbiol (1989) 0.90
Microbial availability and size fractionation of dissolved organic carbon after drought in an intermittent stream: biogeochemical link across the stream-riparian interface. Microb Ecol (2006) 0.89
High-diversity biofilm for the oxidation of sulfide-containing effluents. Appl Microbiol Biotechnol (2004) 0.84
Efficiency of fluorescence in situ hybridization for bacterial cell identification in temporary river sediments with contrasting water content. Syst Appl Microbiol (2007) 0.82
Base flow nutrient discharges from lower delmarva peninsula watersheds of virginia, USA. J Environ Qual (2009) 0.80
Ecology of the rare microbial biosphere of the Arctic Ocean. Proc Natl Acad Sci U S A (2009) 2.89
Global ecological patterns in uncultured Archaea. ISME J (2009) 2.78
Using network analysis to explore co-occurrence patterns in soil microbial communities. ISME J (2011) 2.76
Prokaryotic genetic diversity throughout the salinity gradient of a coastal solar saltern. Environ Microbiol (2002) 2.10
Hydrography shapes bacterial biogeography of the deep Arctic Ocean. ISME J (2009) 1.71
Distribution of prokaryotic genetic diversity in athalassohaline lakes of the Atacama Desert, Northern Chile. FEMS Microbiol Ecol (2004) 1.61
Unique archaeal assemblages in the Arctic Ocean unveiled by massively parallel tag sequencing. ISME J (2009) 1.61
Viability and potential for immigration of airborne bacteria from Africa that reach high mountain lakes in Europe. Environ Microbiol (2009) 1.43
High archaeal richness in the water column of a freshwater sulfurous karstic lake along an interannual study. FEMS Microbiol Ecol (2008) 1.23
High similarity between bacterioneuston and airborne bacterial community compositions in a high mountain lake area. FEMS Microbiol Ecol (2008) 1.23
Differential photoinhibition of bacterial and archaeal ammonia oxidation. FEMS Microbiol Lett (2011) 1.19
A hotspot for cold crenarchaeota in the neuston of high mountain lakes. Environ Microbiol (2008) 1.19
Novelty and spatio-temporal heterogeneity in the bacterial diversity of hypersaline Lake Tebenquiche (Salar de Atacama). Extremophiles (2008) 1.11
High bicarbonate assimilation in the dark by Arctic bacteria. ISME J (2010) 1.09
A survey on bacteria inhabiting the sea surface microlayer of coastal ecosystems. FEMS Microbiol Ecol (2005) 1.08
Endosymbiotic calcifying bacteria: a new cue to the origin of calcification in metazoa? Evolution (2012) 1.08
Bacterial communities associated with benthic organic matter in headwater stream microhabitats. Environ Microbiol (2005) 1.07
Diversity of planktonic photoautotrophic microorganisms along a salinity gradient as depicted by microscopy, flow cytometry, pigment analysis and DNA-based methods. FEMS Microbiol Ecol (2004) 1.04
Vertical segregation and phylogenetic characterization of ammonia-oxidizing Archaea in a deep oligotrophic lake. ISME J (2012) 1.03
Euxinic freshwater hypolimnia promote bacterial endemicity in continental areas. Microb Ecol (2010) 1.01
Genetic diversity of planktonic eukaryotes in high mountain lakes (Central Pyrenees, Spain). Environ Microbiol (2012) 1.01
Partitioning of CO(2) incorporation among planktonic microbial guilds and estimation of in situ specific growth rates. Microb Ecol (2005) 1.00
Seasonal changes of freshwater ammonia-oxidizing archaeal assemblages and nitrogen species in oligotrophic alpine lakes. Appl Environ Microbiol (2011) 0.99
Colonization of overlaying water by bacteria from dry river sediments. Environ Microbiol (2008) 0.97
Phylogenetic ecology of widespread uncultured clades of the Kingdom Euryarchaeota. Mol Ecol (2011) 0.96
Bacterial 'cosmopolitanism' and importance of local environmental factors for community composition in remote high-altitude lakes. Freshw Biol (2009) 0.95
Exploring the links between natural products and bacterial assemblages in the sponge Aplysina aerophoba. Appl Environ Microbiol (2010) 0.93
Vertical distribution of ammonia-oxidizing crenarchaeota and methanogens in the epipelagic waters of Lake Kivu (Rwanda-Democratic Republic of the Congo). Appl Environ Microbiol (2010) 0.93
Exploration of community traits as ecological markers in microbial metagenomes. Mol Ecol (2011) 0.92
Partitioning of Thaumarchaeota populations along environmental gradients in high mountain lakes. FEMS Microbiol Ecol (2012) 0.91
Conductive magnetite nanoparticles accelerate the microbial reductive dechlorination of trichloroethene by promoting interspecies electron transfer processes. ChemSusChem (2013) 0.89
Spatial comparison of total vs. active bacterial populations by coupling genetic fingerprinting and clone library analyses in the NW Mediterranean Sea. FEMS Microbiol Ecol (2009) 0.89
Microbial availability and size fractionation of dissolved organic carbon after drought in an intermittent stream: biogeochemical link across the stream-riparian interface. Microb Ecol (2006) 0.89
Catalyzed reported deposition-fluorescence in situ hybridization protocol to evaluate phagotrophy in mixotrophic protists. Appl Environ Microbiol (2005) 0.86
Patterns and architecture of genomic islands in marine bacteria. BMC Genomics (2012) 0.85
Habitat-associated phylogenetic community patterns of microbial ammonia oxidizers. PLoS One (2012) 0.85
Fingerprinting the genetic diversity of the biotin carboxylase gene (accC) in aquatic ecosystems as a potential marker for studies of carbon dioxide assimilation in the dark. Environ Microbiol (2008) 0.85
Diel gene expression profiles of a phosphorus limited mountain lake using metatranscriptomics. Environ Microbiol (2012) 0.84
A close relationship between primary nucleotides sequence structure and the composition of functional genes in the genome of prokaryotes. Mol Phylogenet Evol (2011) 0.84
Bacterial and archaeal community structure in the surface microlayer of high mountain lakes examined under two atmospheric aerosol loading scenarios. FEMS Microbiol Ecol (2013) 0.84
Environmental controls and composition of anoxygenic photoheterotrophs in ultraoligotrophic high-altitude lakes (Central Pyrenees). Environ Microbiol Rep (2014) 0.84
High bacterial diversity in epilithic biofilms of oligotrophic mountain lakes. Microb Ecol (2012) 0.83
Distribution of microbial arsenic reduction, oxidation and extrusion genes along a wide range of environmental arsenic concentrations. PLoS One (2013) 0.82
The role of a groundwater bacterial community in the degradation of the herbicide terbuthylazine. FEMS Microbiol Ecol (2010) 0.82
Efficiency of fluorescence in situ hybridization for bacterial cell identification in temporary river sediments with contrasting water content. Syst Appl Microbiol (2007) 0.82
Nitrogen-cycling genes in epilithic biofilms of oligotrophic high-altitude lakes (central Pyrenees, Spain). Microb Ecol (2014) 0.81
Bacterial uptake of DOM released from P-limited phytoplankton. FEMS Microbiol Ecol (2003) 0.81
Winter to spring changes in the slush bacterial community composition of a high-mountain lake (Lake Redon, Pyrenees). Environ Microbiol Rep (2011) 0.81
Characterization of tetA-like gene encoding for a major facilitator superfamily efflux pump in Streptococcus thermophilus. FEMS Microbiol Lett (2014) 0.80
T-RFPred: a nucleotide sequence size prediction tool for microbial community description based on terminal-restriction fragment length polymorphism chromatograms. BMC Microbiol (2010) 0.80
A close link between bacterial community composition and environmental heterogeneity in maritime Antarctic lakes. Int Microbiol (2010) 0.80
Environmental distribution of two widespread uncultured freshwater Euryarchaeota clades unveiled by specific primers and quantitative PCR. Environ Microbiol Rep (2013) 0.79
Active bacteria and archaea cells fixing bicarbonate in the dark along the water column of a stratified eutrophic lagoon. FEMS Microbiol Ecol (2011) 0.79
Ecophysiological significance of scale-dependent patterns in prokaryotic genomes unveiled by a combination of statistic and genometric analyses. Genomics (2008) 0.79
Experimental improvements in combining CARD-FISH and flow cytometry for bacterial cell quantification. J Microbiol Methods (2011) 0.79
Wastewater treatment plant effluents change abundance and composition of ammonia-oxidizing microorganisms in mediterranean urban stream biofilms. Microb Ecol (2014) 0.78
High genetic diversity and novelty in planktonic protists inhabiting inland and coastal high salinity water bodies. FEMS Microbiol Ecol (2013) 0.78
A phylogenetic perspective on species diversity, β-diversity and biogeography for the microbial world. Mol Ecol (2014) 0.78
Maintenance of previously uncultured freshwater archaea from anoxic waters under laboratory conditions. Antonie Van Leeuwenhoek (2010) 0.77
Environmental heterogeneity and microbial inheritance influence sponge-associated bacterial composition of Spongia lamella. Microb Ecol (2014) 0.76
CARD-FISH and confocal laser scanner microscopy to assess successional changes of the bacterial community in freshwater biofilms. J Microbiol Methods (2011) 0.76
Contrasting activity patterns determined by BrdU incorporation in bacterial ribotypes from the Arctic Ocean in winter. Front Microbiol (2013) 0.76
Comparison of Artemia-bacteria associations in brines, laboratory cultures and the gut environment: a study based on Chilean hypersaline environments. Extremophiles (2014) 0.75
Sodium dodecyl sulfate-polyacrylamide gel protein electrophoresis of freshwater photosynthetic sulfur bacteria. Curr Microbiol (2010) 0.75
Targeting spatiotemporal dynamics of planktonic SAGMGC-1 and segregation of ammonia-oxidizing thaumarchaeota ecotypes by newly designed primers and quantitative polymerase chain reaction. Environ Microbiol (2013) 0.75