Published in Environ Microbiol Rep on January 19, 2009
Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice. Genome Biol (2013) 1.97
Genotype is a stronger determinant than sex of the mouse gut microbiota. Microb Ecol (2010) 1.63
Tissue eosinophilia in a mouse model of colitis is highly dependent on TLR2 and independent of mast cells. Am J Pathol (2010) 0.81
Can Colonoscopy Aspirates be a Substitute for Fecal Samples in Analyses of the Intestinal Microbiota? Biosci Microbiota Food Health (2012) 0.75
Differences between tissue-associated intestinal microfloras of patients with Crohn's disease and ulcerative colitis. J Clin Microbiol (2006) 3.02
Low species barriers in halophilic archaea and the formation of recombinant hybrids. Curr Biol (2012) 2.67
The evolution of modularity in bacterial metabolic networks. Proc Natl Acad Sci U S A (2008) 1.96
Distinct Microbiotas are Associated with Ileum-Restricted and Colon-Involving Crohn's Disease. Inflamm Bowel Dis (2016) 1.96
New and emerging roles for mast cells in host defence. Curr Opin Immunol (2006) 1.88
The large-scale organization of the bacterial network of ecological co-occurrence interactions. Nucleic Acids Res (2010) 1.75
Competitive and cooperative metabolic interactions in bacterial communities. Nat Commun (2011) 1.75
Cutting edge: distinct Toll-like receptor 2 activators selectively induce different classes of mediator production from human mast cells. J Immunol (2003) 1.71
Genotype is a stronger determinant than sex of the mouse gut microbiota. Microb Ecol (2010) 1.63
The development of early host response to Pseudomonas aeruginosa lung infection is critically dependent on myeloid differentiation factor 88 in mice. J Biol Chem (2004) 1.58
Searching for species in haloarchaea. Proc Natl Acad Sci U S A (2007) 1.46
Metabolic-network-driven analysis of bacterial ecological strategies. Genome Biol (2009) 1.44
The complexity hypothesis revisited: connectivity rather than function constitutes a barrier to horizontal gene transfer. Mol Biol Evol (2010) 1.44
Enhancement of mast cell IL-6 production by combined toll-like and nucleotide-binding oligomerization domain-like receptor activation. Int Arch Allergy Immunol (2010) 1.40
Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria. ISME J (2009) 1.34
Association between translation efficiency and horizontal gene transfer within microbial communities. Nucleic Acids Res (2011) 1.24
Multilocus sequence typing (MLST) of Escherichia coli O78 strains. FEMS Microbiol Lett (2003) 1.21
A likelihood framework to analyse phyletic patterns. Philos Trans R Soc Lond B Biol Sci (2008) 1.16
Development of an interleukin-12-deficient mouse model that is permissive for colonization by a motile KE26695 strain of Helicobacter pylori. Infect Immun (2003) 1.15
Complexity, connectivity, and duplicability as barriers to lateral gene transfer. Genome Biol (2007) 1.13
Prostaglandin E2 induces degranulation-independent production of vascular endothelial growth factor by human mast cells. J Immunol (2004) 1.13
Dengue virus selectively induces human mast cell chemokine production. J Virol (2002) 1.12
A critical role for mast cells and mast cell-derived IL-6 in TLR2-mediated inhibition of tumor growth. J Immunol (2010) 1.10
IgE-mediated mast cell activation induces Langerhans cell migration in vivo. J Immunol (2004) 1.10
CRISPR loci reveal networks of gene exchange in archaea. Biol Direct (2011) 1.09
Gastric microbiota is altered in oesophagitis and Barrett's oesophagus and further modified by proton pump inhibitors. Environ Microbiol (2013) 1.08
Extensive gene diversity in septicemic Escherichia coli strains. J Clin Microbiol (2005) 1.07
Mast cells have a pivotal role in TNF-independent lymph node hypertrophy and the mobilization of Langerhans cells in response to bacterial peptidoglycan. J Immunol (2006) 1.07
Phylogenetic- and genome-derived insight into the evolution of N-glycosylation in Archaea. Mol Phylogenet Evol (2013) 1.04
Reconstructing ancestral gene content by coevolution. Genome Res (2009) 1.04
A degenerate type III secretion system from septicemic Escherichia coli contributes to pathogenesis. J Bacteriol (2005) 1.04
Human mast cell activation with virus-associated stimuli leads to the selective chemotaxis of natural killer cells by a CXCL8-dependent mechanism. Blood (2008) 1.03
The origins of eukaryotic-like proteins in Legionella pneumophila. Int J Med Microbiol (2010) 1.02
Dengue virus infection of mast cells triggers endothelial cell activation. J Virol (2010) 1.02
A systematic assessment of automated ribosomal intergenic spacer analysis (ARISA) as a tool for estimating bacterial richness. Res Microbiol (2010) 1.01
Fungal zymosan induces leukotriene production by human mast cells through a dectin-1-dependent mechanism. J Allergy Clin Immunol (2006) 1.01
The formation of Escherichia coli curli amyloid fibrils is mediated by prion-like peptide repeats. J Mol Biol (2005) 1.00
Decoupling Environment-Dependent and Independent Genetic Robustness across Bacterial Species. PLoS Comput Biol (2010) 0.99
Mast cells, histamine, and IL-6 regulate the selective influx of dendritic cell subsets into an inflamed lymph node. J Immunol (2010) 0.98
Virulence factors of septicemic Escherichia coli strains. Int J Med Microbiol (2005) 0.97
RNA sensors enable human mast cell anti-viral chemokine production and IFN-mediated protection in response to antibody-enhanced dengue virus infection. PLoS One (2012) 0.95
Zymosan treatment of mouse mast cells enhances dectin-1 expression and induces dectin-1-dependent reactive oxygen species (ROS) generation. Immunobiology (2008) 0.95
A dominant role for FcgammaRII in antibody-enhanced dengue virus infection of human mast cells and associated CCL5 release. J Leukoc Biol (2006) 0.95
Composition and dynamics of the gill microbiota of an invasive Indo-Pacific oyster in the eastern Mediterranean Sea. Environ Microbiol (2011) 0.93
A genetic investigation of the KEOPS complex in halophilic Archaea. PLoS One (2012) 0.92
The ubiquitous conserved glycopeptidase Gcp prevents accumulation of toxic glycated proteins. MBio (2010) 0.92
By their genes ye shall know them: genomic signatures of predatory bacteria. ISME J (2012) 0.91
An evolutionary analysis of lateral gene transfer in thymidylate synthase enzymes. Syst Biol (2010) 0.91
Native homing endonucleases can target conserved genes in humans and in animal models. Nucleic Acids Res (2011) 0.90
TRAF6 specifically contributes to FcepsilonRI-mediated cytokine production but not mast cell degranulation. J Biol Chem (2008) 0.89
Dramatic caspase-dependent apoptosis in antibody-enhanced dengue virus infection of human mast cells. J Leukoc Biol (2008) 0.89
CEACAM1 recognition by bacterial pathogens is species-specific. BMC Microbiol (2010) 0.89
Aging in the absence of TLR2 is associated with reduced IFN-gamma responses in the large intestine and increased severity of induced colitis. J Leukoc Biol (2008) 0.89
The lpf operon of invasive Escherichia coli. Int J Med Microbiol (2005) 0.88
Computational evaluation of cellular metabolic costs successfully predicts genes whose expression is deleterious. Proc Natl Acad Sci U S A (2013) 0.88
In vivo characterization of the homing endonuclease within the polB gene in the halophilic archaeon Haloferax volcanii. PLoS One (2011) 0.87
Contribution of lateral gene transfer to the gene repertoire of a gut-adapted methanogen. Genomics (2011) 0.87
Virus stimulation of human mast cells results in the recruitment of CD56⁺ T cells by a mechanism dependent on CCR5 ligands. FASEB J (2011) 0.87
Sequence features of E. coli mRNAs affect their degradation. PLoS One (2011) 0.87
Selective early production of CCL20, or macrophage inflammatory protein 3alpha, by human mast cells in response to Pseudomonas aeruginosa. Infect Immun (2003) 0.85
Neutrality of foreign complex subunits in an experimental model of lateral gene transfer. Mol Biol Evol (2008) 0.85
Zebrafish mast cells possess an FcɛRI-like receptor and participate in innate and adaptive immune responses. Dev Comp Immunol (2010) 0.83
MAPK kinase 3 is a tumor suppressor with reduced copy number in breast cancer. Cancer Res (2013) 0.83
Cell fusion and hybrids in Archaea: prospects for genome shuffling and accelerated strain development for biotechnology. Bioengineered (2012) 0.82
Homing endonucleases residing within inteins: evolutionary puzzles awaiting genetic solutions. Biochem Soc Trans (2011) 0.81
Deriving enzymatic and taxonomic signatures of metagenomes from short read data. BMC Bioinformatics (2010) 0.81
Tissue eosinophilia in a mouse model of colitis is highly dependent on TLR2 and independent of mast cells. Am J Pathol (2010) 0.81
Mast cells and IgE activation do not alter the development of oral tolerance in a murine model. J Allergy Clin Immunol (2012) 0.81
Integration of a foreign gene into a native complex does not impair fitness in an experimental model of lateral gene transfer. Mol Biol Evol (2010) 0.81
Predictors of interleukin-33 and thymic stromal lymphopoietin levels in cord blood. Pediatr Allergy Immunol (2015) 0.80
Detection of spatial and temporal influences on bacterial communities in an urban stream by automated ribosomal intergenic ribosomal spacer analysis. Microbes Environ (2011) 0.80
Complex array of endobionts in Petalomonas sphagnophila, a large heterotrophic euglenid protist from Sphagnum-dominated peatlands. ISME J (2010) 0.80
Human mast cells induce caspase-independent DNA fragmentation in leukemic T cells. Oncol Rep (2003) 0.80
Extensive Inter-Domain Lateral Gene Transfer in the Evolution of the Human Commensal Methanosphaera stadtmanae. Front Genet (2012) 0.79
Signal transducer and activator of transcription 4 (STAT4), but not IL-12 contributes to Pseudomonas aeruginosa-induced lung inflammation in mice. Immunobiology (2008) 0.79
Phylo SI: a new genome-wide approach for prokaryotic phylogeny. Nucleic Acids Res (2013) 0.79
Local and systemic immunological parameters associated with remission of asthma symptoms in children. Allergy Asthma Clin Immunol (2012) 0.79
Effect of ribosome-targeting antibiotics on streptomycin-resistant Mycobacterium mutants in the rpsL gene. Int J Antimicrob Agents (2013) 0.78
Eisenbergiella tayi gen. nov., sp. nov., isolated from human blood. Int J Syst Evol Microbiol (2013) 0.78
A halocin-H4 mutant Haloferax mediterranei strain retains the ability to inhibit growth of other halophilic archaea. Extremophiles (2013) 0.78
Analysis of coevolving gene families using mutually exclusive orthologous modules. Genome Biol Evol (2011) 0.77
In situ transplant analysis of free-living bacteria in a lotic ecosystem. Res Microbiol (2012) 0.76
Sexually transmitted Escherichia coli urethritis and orchiepididymitis. Sex Transm Dis (2012) 0.76
Menaquinone and iron are essential for complex colony development in Bacillus subtilis. PLoS One (2013) 0.75
Reply. Inflamm Bowel Dis (2016) 0.75
Fine-scale temporal dynamics of a fragmented lotic microbial ecosystem. Sci Rep (2012) 0.75
The contribution of common rpsL mutations in Escherichia coli to sensitivity to ribosome targeting antibiotics. Int J Med Microbiol (2013) 0.75
Keystone symposium on 'Mast cells, Basophils and IgE: host defense and disease'. Expert Rev Clin Immunol (2007) 0.75
Air Pollution During Pregnancy and Cord Blood Immune System Biomarkers. J Occup Environ Med (2016) 0.75
Human mast cell activation with viruses and pathogen products. Methods Mol Biol (2015) 0.75
Virus-Infected Human Mast Cells Enhance Natural Killer Cell Functions. J Innate Immun (2016) 0.75
Protein splicing activity of the PolB-c intein is sensitive to homing endonuclease domain mutations. Biochemistry (2020) 0.75
Ribosomal mutations affecting the translation of genes that use non-optimal codons. FEBS J (2014) 0.75
Investigating a lotic microbial community following a severe detergent spill. Arch Microbiol (2014) 0.75