Evolutionary dynamics of retrotransposable elements Rex1, Rex3 and Rex6 in neotropical cichlid genomes.

PubWeight™: 0.99‹?› | Rank: Top 15%

🔗 View Article (PMC 3728117)

Published in BMC Evol Biol on July 16, 2013

Authors

Carlos Henrique Schneider1, Maria Claudia Gross, Maria Leandra Terencio, Edson Junior do Carmo, Cesar Martins, Eliana Feldberg

Author Affiliations

1: Laboratório de Genética Animal, Instituto Nacional de Pesquisas da Amazônia, Av. André Araújo, 2936, Petrópolis, 69011-970, Manaus, Amazonas, Brazil. schneider.carloshenrique@gmail.com

Articles citing this

Repetitive sequences: the hidden diversity of heterochromatin in prochilodontid fish. Comp Cytogenet (2015) 0.78

Comparative cytogenetics of Neotropical cichlid fishes (Nannacara, Ivanacara and Cleithracara) indicates evolutionary reduction of diploid chromosome numbers. Comp Cytogenet (2014) 0.78

Dynamics of Rex3 in the genomes of endangered Iberian Leuciscinae (Teleostei, Cyprinidae) and their natural hybrids. Mol Cytogenet (2015) 0.78

Chromosome mapping of retrotransposable elements Rex1 and Rex3 in Leporinus Spix, 1829 species (Characiformes: Anostomidae) and its relationships among heterochromatic segments and W sex chromosome. Mob Genet Elements (2013) 0.77

A new multiple sex chromosome system X1X1X2X2/X1Y1X2Y2 in Siluriformes: cytogenetic characterization of Bunocephalus coracoideus (Aspredinidae). Genetica (2016) 0.77

Chromosomal distribution of microsatellite repeats in Amazon cichlids genome (Pisces, Cichlidae). Comp Cytogenet (2015) 0.75

Genomic Organization Under Different Environmental Conditions: Hoplosternum Littorale as a Model. Zebrafish (2016) 0.75

First cytogenetic report in Cichlasoma sanctifranciscense Kullander, 1983 (Perciformes, Cichlidae) from northeastern Brazil with inferences on chromosomal evolution of Cichlasomatini. Comp Cytogenet (2015) 0.75

New insights of karyoevolution in the Amazonian turtles Podocnemis expansa and Podocnemis unifilis (Testudines, Podocnemidae). Mol Cytogenet (2016) 0.75

First insights on the retroelement Rex1 in the cytogenetics of frogs. Mol Cytogenet (2015) 0.75

Integrated cytogenetics and genomics analysis of transposable elements in the Nile tilapia, Oreochromis niloticus. Mol Genet Genomics (2016) 0.75

Articles cited by this

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res (1994) 392.47

MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol (2011) 220.97

MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (2003) 130.85

Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res (2005) 23.41

Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science (2002) 20.59

Cytogenetic analysis using quantitative, high-sensitivity, fluorescence hybridization. Proc Natl Acad Sci U S A (1986) 12.92

Mobile elements: drivers of genome evolution. Science (2004) 11.78

Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet (2007) 7.14

Adaptive evolution and explosive speciation: the cichlid fish model. Nat Rev Genet (2004) 5.82

Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor. BMC Bioinformatics (2006) 5.50

Evolution of the mammalian transcription factor binding repertoire via transposable elements. Genome Res (2008) 3.76

Perspective: transposable elements, parasitic DNA, and genome evolution. Evolution (2001) 3.30

Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes. Bioessays (2006) 2.71

Genome evolution and biodiversity in teleost fish. Heredity (Edinb) (2005) 2.65

Dynamic interactions between transposable elements and their hosts. Nat Rev Genet (2011) 2.61

Transposable elements and host genome evolution. Trends Ecol Evol (2000) 2.13

Promiscuous DNA: horizontal transfer of transposable elements and why it matters for eukaryotic evolution. Trends Ecol Evol (2010) 1.95

The ecology of the genome - mobile DNA elements and their hosts. Nat Rev Genet (2005) 1.82

Chromosome differentiation patterns during cichlid fish evolution. BMC Genet (2010) 1.70

SINEs and LINEs share common 3' sequences: a review. Gene (1997) 1.67

Transposable elements as drivers of genomic and biological diversity in vertebrates. Chromosome Res (2008) 1.61

Comparative cytogenetic analysis of the genus symphysodon (discus fishes, cichlidae): chromosomal characteristics of retrotransposons and minor ribosomal DNA. Cytogenet Genome Res (2010) 1.32

Diversity of retrotransposable elements in compact pufferfish genomes. Trends Genet (2003) 1.30

Horizontal transfer and selection in the evolution of P elements. Mol Biol Evol (2000) 1.27

Variability of 18S rDNA locus among Symphysodon fishes: chromosomal rearrangements. J Fish Biol (2010) 1.26

Multiple lineages of the non-LTR retrotransposon Rex1 with varying success in invading fish genomes. Mol Biol Evol (2000) 1.23

The non-LTR retrotransposon Rex3 from the fish Xiphophorus is widespread among teleosts. Mol Biol Evol (1999) 1.17

Cytogenetic mapping of the retroelements Rex1, Rex3 and Rex6 among cichlid fish: new insights on the chromosomal distribution of transposable elements. Cytogenet Genome Res (2010) 1.16

Genomic organization of repetitive DNAs in the cichlid fish Astronotus ocellatus. Genetica (2008) 1.15

Non-LTR retrotransposons encoding a restriction enzyme-like endonuclease in vertebrates. J Mol Evol (2001) 1.14

Organization of repeated DNA elements in the genome of the cichlid fish Cichla kelberi and its contributions to the knowledge of fish genomes. Cytogenet Genome Res (2009) 1.12

Dong, a non-long terminal repeat (non-LTR) retrotransposable element from Bombyx mori. Nucleic Acids Res (1993) 1.09

A LINE element from the pufferfish (fugu) Fugu rubripes which shows similarity to the CR1 family of non-LTR retrotransposons. Gene (1999) 1.07

Horizontal transmission versus ancient origin: mariner in the witness box. Genetica (1994) 1.01

Codon usage by transposable elements and their host genes in five species. J Mol Evol (2002) 0.98

Chromosome evolution in African cichlid fish: contributions from the physical mapping of repeated DNAs. Cytogenet Genome Res (2010) 0.96

Evolutionary dynamics of rRNA gene clusters in cichlid fish. BMC Evol Biol (2012) 0.96

Physical mapping of 5S rDNA in two species of Knifefishes: Gymnotus pantanal and Gymnotus paraguensis (Gymnotiformes). Cytogenet Genome Res (2011) 0.94

Karyological evidence for interspecific hybridization between Cichla monoculus and C. temensis (Perciformes, Cichlidae) in the Amazon. Hereditas (2004) 0.94

Molecular phylogeny and evidence for an adaptive radiation of geophagine cichlids from South America (Perciformes: Labroidei). Mol Phylogenet Evol (2005) 0.92

Global heterochromatic colocalization of transposable elements with minisatellites in the compact genome of the pufferfish Tetraodon nigroviridis. Gene (2004) 0.91

Accumulation and rapid decay of non-LTR retrotransposons in the genome of the three-spine stickleback. Genome Biol Evol (2012) 0.90

Repetitive sequences associated with differentiation of W chromosome in Semaprochilodus taeniurus. Genetica (2013) 0.90

Codon usage and the origin of P elements. Mol Biol Evol (2000) 0.89

The evolutionary life history of P transposons: from horizontal invaders to domesticated neogenes. Chromosoma (2001) 0.87

A molecular perspective on systematics, taxonomy and classification amazonian discus fishes of the genus symphysodon. Int J Evol Biol (2011) 0.86

Fish transposons and their potential use in aquaculture. J Biotechnol (2006) 0.80

Articles by these authors

The B chromosomes of the African cichlid fish Haplochromis obliquidens harbour 18S rRNA gene copies. BMC Genet (2010) 1.92

Chromosome differentiation patterns during cichlid fish evolution. BMC Genet (2010) 1.70

Chromosome spreading of associated transposable elements and ribosomal DNA in the fish Erythrinus erythrinus. Implications for genome change and karyoevolution in fish. BMC Evol Biol (2010) 1.42

Physical chromosome mapping of repetitive DNA sequences in Nile tilapia Oreochromis niloticus: evidences for a differential distribution of repetitive elements in the sex chromosomes. Micron (2007) 1.23

Chromosomal organization of the 18S and 5S rRNAs and histone H3 genes in Scarabaeinae coleopterans: insights into the evolutionary dynamics of multigene families and heterochromatin. BMC Genet (2011) 1.15

Genomic organization of repetitive DNAs in the cichlid fish Astronotus ocellatus. Genetica (2008) 1.15

The 5S rDNA family evolves through concerted and birth-and-death evolution in fish genomes: an example from freshwater stingrays. BMC Evol Biol (2011) 1.05

Evolutionary dynamics of rRNA gene clusters in cichlid fish. BMC Evol Biol (2012) 0.96

Mutagenic effects of mercury pollution as revealed by micronucleus test on three Amazonian fish species. Environ Res (2005) 0.96

Karyological evidence for interspecific hybridization between Cichla monoculus and C. temensis (Perciformes, Cichlidae) in the Amazon. Hereditas (2004) 0.94

Comparative cytogenetics of cichlid fishes through genomic in-situ hybridization (GISH) with emphasis on Oreochromis niloticus. Chromosome Res (2009) 0.94

Molecular organization of 5S rDNA in sharks of the genus Rhizoprionodon: insights into the evolutionary dynamics of 5S rDNA in vertebrate genomes. Genet Res (Camb) (2009) 0.93

Chromosomal mapping of rDNAs and H3 histone sequences in the grasshopper rhammatocerus brasiliensis (acrididae, gomphocerinae): extensive chromosomal dispersion and co-localization of 5S rDNA/H3 histone clusters in the A complement and B chromosome. Mol Cytogenet (2011) 0.92

Occurrence of multiple sexual chromosomes (XX/XY1Y2 and Z1Z1Z2Z2/Z1Z2W1W2) in catfishes of the genus Ancistrus (Siluriformes: Loricariidae) from the Amazon basin. Genetica (2007) 0.92

Genomic content and new insights on the origin of the B chromosome of the cichlid fish Astatotilapia latifasciata. Genetica (2011) 0.91

Evolutionary dynamics of heterochromatin in the genome of Dichotomius beetles based on chromosomal analysis. Genetica (2011) 0.91

Comparative chromosome mapping of repetitive sequences. Implications for genomic evolution in the fish, Hoplias malabaricus. BMC Genet (2009) 0.91

Comparison of in situ forces and knee kinematics in anteromedial and high anteromedial bundle augmentation for partially ruptured anterior cruciate ligament. Am J Sports Med (2010) 0.90

Cytogenetic analysis of three species of the genus Haemulon (Teleostei: Haemulinae) from Margarita Island, Venezuela. Genetica (2006) 0.90

Repetitive sequences associated with differentiation of W chromosome in Semaprochilodus taeniurus. Genetica (2013) 0.90

Characterisation of the chromosome fusions in Oreochromis karongae. Chromosome Res (2010) 0.89

Non-destructive genetic sampling in fish. An improved method for DNA extraction from fish fins and scales. Hereditas (2003) 0.87

Quantitative expression of myogenic regulatory factors MyoD and myogenin in pacu (Piaractus mesopotamicus) skeletal muscle during growth. Micron (2010) 0.85

The development of a universal in silico predictor of protein-protein interactions. PLoS One (2013) 0.84

5S rDNA variation and its phylogenetic inference in the genus Leporinus (Characiformes: Anostomidae). Genetica (2006) 0.83

Horizontal transfers of Mariner transposons between mammals and insects. Mob DNA (2012) 0.82

A novel ZZ/ZW sex chromosome system for the genus Leporinus (Pisces, Anostomidae, Characiformes). Genetica (2004) 0.81

Occurrence of ZZ/ZW sex chromosomes in Thoracocharax stellatus fish (Characiformes, Gasteropelecidae) from the Araguaia River, South America. Genetica (2007) 0.81

A comparative cytogenetic study of five piranha species (Serrasalmus, Serrasalminae) from the Amazon basin. Genetica (2002) 0.80

Integrating cytogenetics and genomics in comparative evolutionary studies of cichlid fish. BMC Genomics (2012) 0.80

Karyotypic diversity in seven Amazonian anurans in the genus Hypsiboas (family Hylidae). BMC Genet (2014) 0.80

Screening and characterization of sex-specific DNA fragments in the freshwater fish matrinchã, Brycon amazonicus (Teleostei: Characiformes: Characidae). Fish Physiol Biochem (2012) 0.79

Comparative cytogenetic mapping of Sox2 and Sox14 in cichlid fishes and inferences on the genomic organization of both genes in vertebrates. Chromosome Res (2011) 0.79

B chromosome in the beetle Coprophanaeus cyanescens (Scarabaeidae): emphasis in the organization of repetitive DNA sequences. BMC Genet (2012) 0.78

XX/XO, a rare sex chromosome system in Potamotrygon freshwater stingray from the Amazon Basin, Brazil. Genetica (2013) 0.78

Chromosomal diversification of diploid number, heterochromatin and rDNAs in two species of Phanaeus beetles (Scarabaeidae, Scarabaeinae). Genet Mol Biol (2013) 0.78

Chromosomal polymorphism in two species of Hypancistrus (Siluriformes: Loricariidae): an integrative approach for understanding their biodiversity. Genetica (2014) 0.77

Variations of chromosomal structures in Caluromys philander (Didelphimorphia: Didelphidae) from the Amazon region. Genetica (2013) 0.77

A streamlined DNA tool for global identification of heavily exploited coastal shark species (genus Rhizoprionodon). PLoS One (2012) 0.77

Classical and molecular cytogenetic characterization of Agonostomus monticola, a primitive species of Mugilidae (Mugiliformes). Genetica (2008) 0.77

Differential expression of myogenic regulatory factor MyoD in pacu skeletal muscle (Piaractus mesopotamicus Holmberg 1887: Serrasalminae, Characidae, Teleostei) during juvenile and adult growth phases. Micron (2008) 0.77

5S rDNA organization in the fish Synbranchus marmoratus (Synbranchidae, Synbranchiformes). Hereditas (2003) 0.76

Evolutionary Dynamics of 5S rDNA and Recurrent Association of Transposable Elements in Electric Fish of the Family Gymnotidae (Gymnotiformes): The Case of Gymnotus mamiraua. Cytogenet Genome Res (2016) 0.76

Isolation and characterization of a satellite DNA family in Achirus lineatus (Teleostei: Pleuronectiformes: Achiridae). Genetica (2005) 0.76

Karyological analysis of Proechimys cuvieri and Proechimys guyannensis (Rodentia, Echimyidae) from central Amazon. Genet Mol Biol (2012) 0.75

New approach data in electric fish (Teleostei: Gymnotus): sex chromosome evolution and repetitive DNA. Zebrafish (2014) 0.75

Patterns of rDNA and telomeric sequences diversification: contribution to repetitive DNA organization in Phyllostomidae bats. Genetica (2013) 0.75

Molecular cytogenetic characterization of the Amazon River dolphin Inia geoffrensis. Genetica (2012) 0.75

Structure and organization of the mitochondrial DNA control region with tandemly repeated sequence in the Amazon ornamental fish. Mitochondrial DNA (2012) 0.75

Genomic Organization of Repetitive DNAs and Differentiation of an XX/XY Sex Chromosome System in the Amazonian Puffer Fish, Colomesus asellus (Tetraodontiformes). Cytogenet Genome Res (2017) 0.75

Evolutionary Relationships among Boulengerella Species (Ctenoluciidae, Characiformes): Genomic Organization of Repetitive DNAs and Highly Conserved Karyotypes. Cytogenet Genome Res (2017) 0.75

Chromosomes of three freshwater stingrays (Rajiformes Potamotrygonidae) from the Rio Negro basin, Amazon, Brazil. Genetica (2006) 0.75