Molecular phylodynamic analysis indicates lineage displacement occurred in Chinese rabies epidemics between 1949 to 2010.

PubWeight™: 1.06‹?› | Rank: Top 15%

🔗 View Article (PMC 3708843)

Published in PLoS Negl Trop Dis on July 11, 2013

Authors

Xiao-Yan Tao1, Qing Tang, Simon Rayner, Zhen-Yang Guo, Hao Li, Shu-Lin Lang, Cui-Ping Yin, Na Han, Wei Fang, James Adams, Miao Song, Guo-Dong Liang

Author Affiliations

1: State Key Laboratory for Infectious Disease Prevention and Control, National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.

Articles cited by this

MODELTEST: testing the model of DNA substitution. Bioinformatics (1998) 101.19

BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol (2007) 74.13

Relaxed phylogenetics and dating with confidence. PLoS Biol (2006) 37.68

Bayesian phylogeography finds its roots. PLoS Comput Biol (2009) 10.99

Unifying the epidemiological and evolutionary dynamics of pathogens. Science (2004) 8.33

Evolutionary analysis of the dynamics of viral infectious disease. Nat Rev Genet (2009) 4.56

Molecular diversity of the Lyssavirus genus. Virology (1993) 3.35

Host switching in Lyssavirus history from the Chiroptera to the Carnivora orders. J Virol (2001) 2.61

Synchronous cycles of domestic dog rabies in sub-Saharan Africa and the impact of control efforts. Proc Natl Acad Sci U S A (2007) 2.34

The origin and phylogeography of dog rabies virus. J Gen Virol (2008) 2.23

Maximum-likelihood analysis of molecular adaptation in abalone sperm lysin reveals variable selective pressures among lineages and sites. Mol Biol Evol (2000) 2.21

Human rabies in China. Emerg Infect Dis (2005) 2.00

Bat lyssaviruses (Aravan and Khujand) from Central Asia: phylogenetic relationships according to N, P and G gene sequences. Virus Res (2003) 1.98

Phylodynamics and human-mediated dispersal of a zoonotic virus. PLoS Pathog (2010) 1.83

A virus reveals population structure and recent demographic history of its carnivore host. Science (2006) 1.78

Phylogenetic relationships of Irkut and West Caucasian bat viruses within the Lyssavirus genus and suggested quantitative criteria based on the N gene sequence for lyssavirus genotype definition. Virus Res (2005) 1.75

Epidemiological investigations of human rabies in China. BMC Infect Dis (2009) 1.72

Pivotal role of dogs in rabies transmission, China. Emerg Infect Dis (2005) 1.64

Rabies in the 21 century. PLoS Negl Trop Dis (2010) 1.43

Molecular inferences suggest multiple host shifts of rabies viruses from bats to mesocarnivores in Arizona during 2001-2009. PLoS Pathog (2012) 1.31

The spatial and temporal dynamics of rabies in China. PLoS Negl Trop Dis (2012) 1.23

Analysis on factors related to rabies epidemic in China from 2007-2011. Virol Sin (2012) 1.22

Dynamics of rabies virus quasispecies during serial passages in heterologous hosts. J Gen Virol (1999) 1.14

Molecular epidemiology of rabies in Southern People's Republic of China. Emerg Infect Dis (2009) 1.08

Transmission dynamics of rabies in China over the last 40 years: 1969-2009. J Clin Virol (2010) 1.01

National borders effectively halt the spread of rabies: the current rabies epidemic in China is dislocated from cases in neighboring countries. PLoS Negl Trop Dis (2013) 0.98

Temporal and spatial dynamics of rabies viruses in China and Southeast Asia. Virus Res (2010) 0.97

A history estimate and evolutionary analysis of rabies virus variants in China. J Gen Virol (2009) 0.95

Molecular characterization of viral G gene in emerging and re-emerging areas of rabies in China, 2007 to 2011. Virol Sin (2012) 0.88

Molecular phylogenetics of the lyssaviruses--insights from a coalescent approach. Adv Virus Res (2011) 0.88

Genetic and evolutionary characterization of RABVs from China using the phosphoprotein gene. Virol J (2013) 0.85

Evolutionary pattern of full hepatitis B virus genome during sequential nucleos(t)ide analog therapy. Antiviral Res (2011) 0.81

Lyssaviral infection and lead poisoning in black flying foxes from Queensland. J Wildl Dis (1998) 0.77

Articles by these authors

Genes that act downstream of DAF-16 to influence the lifespan of Caenorhabditis elegans. Nature (2003) 14.49

Clopidogrel with aspirin in acute minor stroke or transient ischemic attack. N Engl J Med (2013) 8.76

Comparing genomic expression patterns across species identifies shared transcriptional profile in aging. Nat Genet (2004) 4.77

CTLA-4 blockade enhances polyfunctional NY-ESO-1 specific T cell responses in metastatic melanoma patients with clinical benefit. Proc Natl Acad Sci U S A (2008) 3.80

Evolution of alternative transcriptional circuits with identical logic. Nature (2006) 3.58

The evolution of combinatorial gene regulation in fungi. PLoS Biol (2008) 3.53

Automated vs continuous ambulatory peritoneal dialysis: a systematic review of randomized controlled trials. Nephrol Dial Transplant (2007) 3.40

Determinants of cell- and gene-specific transcriptional regulation by the glucocorticoid receptor. PLoS Genet (2007) 3.24

Cell- and gene-specific regulation of primary target genes by the androgen receptor. Genes Dev (2007) 2.96

Plk1-dependent phosphorylation of FoxM1 regulates a transcriptional programme required for mitotic progression. Nat Cell Biol (2008) 2.68

Molecular epidemiological analysis of Japanese encephalitis virus in China. J Gen Virol (2007) 2.28

Evolution of eukaryotic transcription circuits. Science (2008) 2.24

Dynamic XML-based exchange of relational data: application to the Human Brain Project. AMIA Annu Symp Proc (2003) 2.16

De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis. Nat Biotechnol (2010) 2.05

Genetic variations and treatments that affect the lifespan of the NPC1 mouse. J Lipid Res (2007) 1.99

Genome-wide diversity and selective pressure in the human rhinovirus. Virol J (2007) 1.94

Diabetes and poor outcomes within 6 months after acute ischemic stroke: the China National Stroke Registry. Stroke (2011) 1.91

The China National Stroke Registry for patients with acute cerebrovascular events: design, rationale, and baseline patient characteristics. Int J Stroke (2011) 1.90

Antibody-based targeting of FGFR3 in bladder carcinoma and t(4;14)-positive multiple myeloma in mice. J Clin Invest (2009) 1.89

Dynamics and design principles of a basic regulatory architecture controlling metabolic pathways. PLoS Biol (2008) 1.86

Inference of combinatorial regulation in yeast transcriptional networks: a case study of sporulation. Proc Natl Acad Sci U S A (2005) 1.86

Indole- and indolizine-glyoxylamides displaying cytotoxicity against multidrug resistant cancer cell lines. Bioorg Med Chem Lett (2008) 1.80

Systematic identification of cis-regulatory sequences active in mouse and human embryonic stem cells. PLoS Genet (2007) 1.77

Gcn4p and novel upstream activating sequences regulate targets of the unfolded protein response. PLoS Biol (2004) 1.73

Epidemiological investigations of human rabies in China. BMC Infect Dis (2009) 1.72

Liver X receptor activation enhances cholesterol loss from the brain, decreases neuroinflammation, and increases survival of the NPC1 mouse. J Neurosci (2007) 1.71

Reduction of Stat3 activity attenuates HIV-induced kidney injury. J Am Soc Nephrol (2009) 1.70

A systematic approach to reconstructing transcription networks in Saccharomycescerevisiae. Proc Natl Acad Sci U S A (2002) 1.70

Functional bias and spatial organization of genes in mutational hot and cold regions in the human genome. PLoS Biol (2004) 1.67

A radically configurable six-state compound. Science (2013) 1.67

Genotype v Japanese encephalitis virus is emerging. PLoS Negl Trop Dis (2011) 1.62

Directed evolution of ionizing radiation resistance in Escherichia coli. J Bacteriol (2009) 1.60

Case-fatality ratio and effectiveness of ribavirin therapy among hospitalized patients in china who had severe fever with thrombocytopenia syndrome. Clin Infect Dis (2013) 1.58

Functional specificity of shuttling hnRNPs revealed by genome-wide analysis of their RNA binding profiles. RNA (2005) 1.58

Rabies in China: an update. Vector Borne Zoonotic Dis (2008) 1.57

Japanese encephalitis outbreak, Yuncheng, China, 2006. Emerg Infect Dis (2007) 1.56

From sorting endosomes to exocytosis: association of Rab4 and Rab11 GTPases with the Fc receptor, FcRn, during recycling. Mol Biol Cell (2005) 1.54

Novel dual-targeting benzimidazole urea inhibitors of DNA gyrase and topoisomerase IV possessing potent antibacterial activity: intelligent design and evolution through the judicious use of structure-guided design and structure-activity relationships. J Med Chem (2008) 1.54

Mutations in the fatty acid transport protein 4 gene cause the ichthyosis prematurity syndrome. Am J Hum Genet (2009) 1.53

Circulation of Coxsackievirus A10 and A6 in hand-foot-mouth disease in China, 2009-2011. PLoS One (2012) 1.52

Quantum-behaved particle swarm optimization: analysis of individual particle behavior and parameter selection. Evol Comput (2011) 1.50

Association of metformin use with cancer incidence and mortality: a meta-analysis. Cancer Epidemiol (2013) 1.49

Early Postoperative Emergency Department Care of Abdominal Transplant Recipients. Transplantation (2015) 1.48

Emergence of genotype I of Japanese encephalitis virus as the dominant genotype in Asia. J Virol (2011) 1.46

Mitochondrial network size scaling in budding yeast. Science (2012) 1.44

Genome-wide regulatory complexity in yeast promoters: separation of functionally conserved and neutral sequence. Genome Res (2005) 1.44

Blockade of TGF-β signaling by the TGFβR-I kinase inhibitor LY2109761 enhances radiation response and prolongs survival in glioblastoma. Cancer Res (2011) 1.42

A ferroelectric oxide made directly on silicon. Science (2009) 1.41

Remission of rheumatoid arthritis and potential determinants: a national multi-center cross-sectional survey. Clin Rheumatol (2014) 1.41

Structure-guided design of potent and selective pyrimidylpyrrole inhibitors of extracellular signal-regulated kinase (ERK) using conformational control. J Med Chem (2009) 1.40

Developing an experimental model for surgical drainage investigations: an initial report. Am J Surg (2012) 1.40

Perioperative Management of Patients Infected with the Novel Coronavirus: Recommendation from the Joint Task Force of the Chinese Society of Anesthesiology and the Chinese Association of Anesthesiologists. Anesthesiology (1) 1.40

Virtue in emergency medicine. Acad Emerg Med (2008) 1.39

MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences. BMC Bioinformatics (2011) 1.38

Regulation of cellular plasticity in Drosophila imaginal disc cells by the Polycomb group, trithorax group and lama genes. Development (2005) 1.37

Using recombinant tissue plasminogen activator to treat acute ischemic stroke in China: analysis of the results from the Chinese National Stroke Registry (CNSR). Stroke (2011) 1.37

The role of surface charge on the uptake and biocompatibility of hydroxyapatite nanoparticles with osteoblast cells. Nanotechnology (2011) 1.35

Polyploidization increases meiotic recombination frequency in Arabidopsis. BMC Biol (2011) 1.33

Pulmonary vein stenosis after radiofrequency ablation of atrial fibrillation: functional characterization, evolution, and influence of the ablation strategy. Circulation (2003) 1.32

The unfolded protein response in fission yeast modulates stability of select mRNAs to maintain protein homeostasis. Elife (2012) 1.29

Distribution of arboviruses and mosquitoes in northwestern Yunnan Province, China. Vector Borne Zoonotic Dis (2009) 1.29

The phytoestrogen coumestrol is a naturally occurring antagonist of the human pregnane X receptor. Mol Endocrinol (2007) 1.29

Sherlock: detecting gene-disease associations by matching patterns of expression QTL and GWAS. Am J Hum Genet (2013) 1.29

High pretreatment serum lactate dehydrogenase level correlates with disease relapse and predicts an inferior outcome in locally advanced nasopharyngeal carcinoma. Eur J Cancer (2013) 1.29

The immunogenicity and safety of vaccination with purified Vero cell rabies vaccine (PVRV) in China under a 2-1-1 regimen. Hum Vaccin (2011) 1.28

miR-137 inhibits the proliferation of lung cancer cells by targeting Cdc42 and Cdk6. FEBS Lett (2012) 1.27

Ultrafast all-optical graphene modulator. Nano Lett (2014) 1.27

Pregnane X receptor activation induces FGF19-dependent tumor aggressiveness in humans and mice. J Clin Invest (2011) 1.27

Japanese encephalitis, Tibet, China. Emerg Infect Dis (2011) 1.26

ORF-FINDER: a vector for high-throughput gene identification. Gene (2002) 1.26

A systematic approach to identify functional motifs within vertebrate developmental enhancers. Dev Biol (2009) 1.26

High peritoneal permeability is not associated with higher mortality or technique failure in patients on automated peritoneal dialysis. Perit Dial Int (2008) 1.26

The spatial and temporal dynamics of rabies in China. PLoS Negl Trop Dis (2012) 1.23

Enantioselective organocatalytic tandem Michael-Aldol reactions: one-pot synthesis of chiral thiochromenes. J Am Chem Soc (2006) 1.23

Molecular phenotyping of aging in single yeast cells using a novel microfluidic device. Aging Cell (2012) 1.22

Relative efficiency and productivity: a preliminary exploration of public hospitals in Beijing, China. BMC Health Serv Res (2014) 1.22

Retinoic acid inhibits HIV-1-induced podocyte proliferation through the cAMP pathway. J Am Soc Nephrol (2006) 1.22

Analysis on factors related to rabies epidemic in China from 2007-2011. Virol Sin (2012) 1.22

Optimization and validation of a robust human T-cell culture method for monitoring phenotypic and polyfunctional antigen-specific CD4 and CD8 T-cell responses. Cytotherapy (2009) 1.21

CsSnI3: Semiconductor or metal? High electrical conductivity and strong near-infrared photoluminescence from a single material. High hole mobility and phase-transitions. J Am Chem Soc (2012) 1.21

Molecular characterization of a novel adult diarrhoea rotavirus strain J19 isolated in China and its significance for the evolution and origin of group B rotaviruses. J Gen Virol (2008) 1.20

WT1 peptide vaccinations induce CD4 and CD8 T cell immune responses in patients with mesothelioma and non-small cell lung cancer. Cancer Immunol Immunother (2010) 1.20

Isolation and characterization of the full coding sequence of a novel densovirus from the mosquito Culex pipiens pallens. J Gen Virol (2008) 1.20

Reconstitution and characterization of the human DNA polymerase delta four-subunit holoenzyme. Biochemistry (2002) 1.19

The epidemic origin and molecular properties of B': a founder strain of the HIV-1 transmission in Asia. AIDS (2008) 1.19

Rabies awareness in eight Asian countries. Vaccine (2008) 1.19

Clustering class I MHC modulates sensitivity of T cell recognition. J Immunol (2006) 1.19

Highly designable phenotypes and mutational buffers emerge from a systematic mapping between network topology and dynamic output. Proc Natl Acad Sci U S A (2006) 1.18

Tools to support policy decisions related to treatment strategies and surveillance of Schistosomiasis japonica towards elimination. PLoS Negl Trop Dis (2011) 1.18