PubRank

Jürg Bähler

Author PubWeight™ 167.45‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature 2008 18.84
2 The BioGRID Interaction Database: 2008 update. Nucleic Acids Res 2007 11.83
3 Global transcriptional responses of fission yeast to environmental stress. Mol Biol Cell 2003 6.04
4 Periodic gene expression program of the fission yeast cell cycle. Nat Genet 2004 5.60
5 Methylation of histone H4 lysine 20 controls recruitment of Crb2 to sites of DNA damage. Cell 2004 4.99
6 The transcriptional program of meiosis and sporulation in fission yeast. Nat Genet 2002 4.80
7 Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation. Nat Rev Genet 2008 3.84
8 Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation. Nature 2007 3.32
9 Whole-genome microarrays of fission yeast: characteristics, accuracy, reproducibility, and processing of array data. BMC Genomics 2003 3.30
10 Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells. Cell 2012 3.26
11 RNA-seq: from technology to biology. Cell Mol Life Sci 2009 3.03
12 PomBase: a comprehensive online resource for fission yeast. Nucleic Acids Res 2011 2.84
13 Genome-wide characterization of fission yeast DNA replication origins. EMBO J 2006 2.53
14 Post-transcriptional control of gene expression: a genome-wide perspective. Trends Biochem Sci 2005 2.33
15 A network of multiple regulatory layers shapes gene expression in fission yeast. Mol Cell 2007 2.29
16 The nuclear poly(A)-binding protein interacts with the exosome to promote synthesis of noncoding small nucleolar RNAs. Mol Cell 2010 2.22
17 A simple method for directional transcriptome sequencing using Illumina technology. Nucleic Acids Res 2009 2.19
18 Global effects on gene expression in fission yeast by silencing and RNA interference machineries. Mol Cell Biol 2005 1.98
19 YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms. Nucleic Acids Res 2006 1.73
20 A coordinated global control over cellular transcription. Curr Biol 2010 1.72
21 Multiple pathways differentially regulate global oxidative stress responses in fission yeast. Mol Biol Cell 2007 1.72
22 Transcriptional regulatory network for sexual differentiation in fission yeast. Genome Biol 2007 1.67
23 Global roles of Ste11p, cell type, and pheromone in the control of gene expression during early sexual differentiation in fission yeast. Proc Natl Acad Sci U S A 2006 1.59
24 Rapidly regulated genes are intron poor. Trends Genet 2008 1.47
25 Next-generation sequencing: applications beyond genomes. Biochem Soc Trans 2008 1.45
26 Global role for polyadenylation-assisted nuclear RNA degradation in posttranscriptional gene silencing. Mol Cell Biol 2007 1.43
27 Regulation of transcriptome, translation, and proteome in response to environmental stress in fission yeast. Genome Biol 2012 1.40
28 Negative regulation of meiotic gene expression by the nuclear poly(a)-binding protein in fission yeast. J Biol Chem 2010 1.37
29 RNA-binding protein Csx1 mediates global control of gene expression in response to oxidative stress. EMBO J 2003 1.35
30 Key function for the CCAAT-binding factor Php4 to regulate gene expression in response to iron deficiency in fission yeast. Eukaryot Cell 2008 1.32
31 Global gene expression responses of fission yeast to ionizing radiation. Mol Biol Cell 2003 1.30
32 Fission yeast SWI/SNF and RSC complexes show compositional and functional differences from budding yeast. Nat Struct Mol Biol 2008 1.28
33 An acetylated form of histone H2A.Z regulates chromosome architecture in Schizosaccharomyces pombe. Nat Struct Mol Biol 2009 1.27
34 The fission yeast HIRA histone chaperone is required for promoter silencing and the suppression of cryptic antisense transcripts. Mol Cell Biol 2009 1.25
35 The S. pombe SAGA complex controls the switch from proliferation to sexual differentiation through the opposing roles of its subunits Gcn5 and Spt8. Genes Dev 2008 1.24
36 A Pre-mRNA degradation pathway that selectively targets intron-containing genes requires the nuclear poly(A)-binding protein. Mol Cell 2011 1.24
37 Impairment of the TFIIH-associated CDK-activating kinase selectively affects cell cycle-regulated gene expression in fission yeast. Mol Biol Cell 2005 1.21
38 Genome-wide dynamics of SAPHIRE, an essential complex for gene activation and chromatin boundaries. Mol Cell Biol 2007 1.18
39 Upf1, an RNA helicase required for nonsense-mediated mRNA decay, modulates the transcriptional response to oxidative stress in fission yeast. Mol Cell Biol 2006 1.18
40 Defining transcribed regions using RNA-seq. Nat Protoc 2010 1.17
41 FYPO: the fission yeast phenotype ontology. Bioinformatics 2013 1.17
42 Translational control of gene expression from transcripts to transcriptomes. Int Rev Cell Mol Biol 2008 1.17
43 CENP-B preserves genome integrity at replication forks paused by retrotransposon LTR. Nature 2010 1.17
44 Coordinating genome expression with cell size. Trends Genet 2012 1.14
45 urg1: a uracil-regulatable promoter system for fission yeast with short induction and repression times. PLoS One 2008 1.12
46 Autoregulation of ribosome biosynthesis by a translational response in fission yeast. Mol Cell Biol 2006 1.12
47 Mfc1 is a novel forespore membrane copper transporter in meiotic and sporulating cells. J Biol Chem 2011 1.10
48 Global transcriptional responses of fission and budding yeast to changes in copper and iron levels: a comparative study. Genome Biol 2007 1.09
49 SCF(Pof1)-ubiquitin and its target Zip1 transcription factor mediate cadmium response in fission yeast. EMBO J 2005 1.09
50 TORC1 signaling inhibition by rapamycin and caffeine affect lifespan, global gene expression, and cell proliferation of fission yeast. Aging Cell 2013 1.08
51 Simplified primer design for PCR-based gene targeting and microarray primer database: two web tools for fission yeast. Yeast 2006 1.06
52 Exploring long non-coding RNAs through sequencing. Semin Cell Dev Biol 2011 1.06
53 The fission yeast homeodomain protein Yox1p binds to MBF and confines MBF-dependent cell-cycle transcription to G1-S via negative feedback. PLoS Genet 2009 1.05
54 Elimination of a specific histone H3K14 acetyltransferase complex bypasses the RNAi pathway to regulate pericentric heterochromatin functions. Genes Dev 2011 1.00
55 TOR complex 2 controls gene silencing, telomere length maintenance, and survival under DNA-damaging conditions. Mol Cell Biol 2009 1.00
56 Cip1 and Cip2 are novel RNA-recognition-motif proteins that counteract Csx1 function during oxidative stress. Mol Biol Cell 2006 0.98
57 Spt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast. Mol Cell Biol 2013 0.98
58 Int6/eIF3e promotes general translation and Atf1 abundance to modulate Sty1 MAPK-dependent stress response in fission yeast. J Biol Chem 2008 0.97
59 Meta-analysis of genome regulation and expression variability across hundreds of environmental and genetic perturbations in fission yeast. Mol Biosyst 2009 0.97
60 Response of Schizosaccharomyces pombe to zinc deficiency. Eukaryot Cell 2008 0.97
61 Role of septins in the orientation of forespore membrane extension during sporulation in fission yeast. Mol Cell Biol 2010 0.96
62 Global expression changes resulting from loss of telomeric DNA in fission yeast. Genome Biol 2004 0.95
63 Website review: how to get the best from fission yeast genome data. Comp Funct Genomics 2002 0.95
64 Differential patterns of intronic and exonic DNA regions with respect to RNA polymerase II occupancy, nucleosome density and H3K36me3 marking in fission yeast. Genome Biol 2011 0.94
65 Failed gene conversion leads to extensive end processing and chromosomal rearrangements in fission yeast. EMBO J 2009 0.94
66 Expression of a RecQ helicase homolog affects progression through crisis in fission yeast lacking telomerase. J Biol Chem 2004 0.94
67 Sites of strong Rec12/Spo11 binding in the fission yeast genome are associated with meiotic recombination and with centromeres. Chromosoma 2008 0.94
68 Individual letters of the RNA polymerase II CTD code govern distinct gene expression programs in fission yeast. Proc Natl Acad Sci U S A 2014 0.93
69 Spt6 is required for heterochromatic silencing in the fission yeast Schizosaccharomyces pombe. Mol Cell Biol 2011 0.93
70 In silico characterization and prediction of global protein-mRNA interactions in yeast. Nucleic Acids Res 2011 0.93
71 Histone H3 lysine 14 acetylation is required for activation of a DNA damage checkpoint in fission yeast. J Biol Chem 2011 0.93
72 Systematic screen for mutants resistant to TORC1 inhibition in fission yeast reveals genes involved in cellular ageing and growth. Biol Open 2014 0.93
73 Extensive mass spectrometry-based analysis of the fission yeast proteome: the Schizosaccharomyces pombe PeptideAtlas. Mol Cell Proteomics 2013 0.92
74 The roles of stress-activated Sty1 and Gcn2 kinases and of the protooncoprotein homologue Int6/eIF3e in responses to endogenous oxidative stress during histidine starvation. J Mol Biol 2010 0.90
75 Genome-wide analysis of poly(A) site selection in Schizosaccharomyces pombe. RNA 2013 0.89
76 Vgl1, a multi-KH domain protein, is a novel component of the fission yeast stress granules required for cell survival under thermal stress. Nucleic Acids Res 2010 0.88
77 Tra1 has specific regulatory roles, rather than global functions, within the SAGA co-activator complex. EMBO J 2011 0.88
78 Fission yeast MAP kinase Sty1 is recruited to stress-induced genes. J Biol Chem 2008 0.88
79 Predicting the fission yeast protein interaction network. G3 (Bethesda) 2012 0.87
80 Stress induces remodelling of yeast interaction and co-expression networks. Mol Biosyst 2013 0.87
81 Cyclin-dependent kinase inhibits reinitiation of a normal S-phase program during G2 in fission yeast. Mol Cell Biol 2009 0.87
82 Altered nuclear tRNA metabolism in La-deleted Schizosaccharomyces pombe is accompanied by a nutritional stress response involving Atf1p and Pcr1p that is suppressible by Xpo-t/Los1p. Mol Biol Cell 2011 0.86
83 Activation of AP-1-dependent transcription by a truncated translation initiation factor. Eukaryot Cell 2005 0.85
84 Genomic expression patterns in cell separation mutants of Schizosaccharomyces pombe defective in the genes sep10 ( + ) and sep15 ( + ) coding for the Mediator subunits Med31 and Med8. Mol Genet Genomics 2007 0.85
85 Structural and functional characterization of the N terminus of Schizosaccharomyces pombe Cwf10. Eukaryot Cell 2013 0.84
86 Transcriptional and cellular responses to defective mitochondrial proteolysis in fission yeast. J Mol Biol 2011 0.84
87 Myb-domain protein Teb1 controls histone levels and centromere assembly in fission yeast. EMBO J 2013 0.82
88 Improved tools for efficient mapping of fission yeast genes: identification of microtubule nucleation modifier mod22-1 as an allele of chromatin- remodelling factor gene swr1. Yeast 2008 0.81
89 Specific replication origins promote DNA amplification in fission yeast. J Cell Sci 2010 0.81
90 The fission yeast Rpb4 subunit of RNA polymerase II plays a specialized role in cell separation. Mol Genet Genomics 2006 0.81
91 N-termini of fungal CSL transcription factors are disordered, enriched in regulatory motifs and inhibit DNA binding in fission yeast. PLoS One 2011 0.81
92 H3K9me-independent gene silencing in fission yeast heterochromatin by Clr5 and histone deacetylases. PLoS Genet 2011 0.80
93 Topology of functional networks predicts physical binding of proteins. Bioinformatics 2012 0.79
94 Inhibition of TORC1 signaling and increased lifespan: gained in translation? Aging (Albany NY) 2013 0.78
95 Navigating public microarray databases. Comp Funct Genomics 2004 0.78
96 Transcriptional activation of the general amino acid permease gene per1 by the histone deacetylase Clr6 Is regulated by Oca2 kinase. Mol Cell Biol 2010 0.77
97 A novel function of the mitochondrial transcription factor Mtf1 in fission yeast; Mtf1 regulates the nuclear transcription of srk1. Nucleic Acids Res 2010 0.76
98 Global approaches to study gene regulation. Methods 2009 0.75
99 Corrigendum: Genetic interactions and functional analyses of the fission yeast gsk3 and amk2 single and double mutants defective in TORC1-dependent processes. Sci Rep 2017 0.75
100 Genome regulation and evolution analysed by next-generation sequencing. Semin Cell Dev Biol 2012 0.75
101 Shaken not stirred: a global research cocktail served in Hinxton. Genome Biol 2007 0.75