PubRank

William S Noble

Author PubWeight™ 159.33‹?›

Top papers

Rank Title Journal Year PubWeight™‹?›
1 Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 2007 75.09
2 MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res 2009 23.27
3 Global mapping of protein-DNA interactions in vivo by digital genomic footprinting. Nat Methods 2009 10.17
4 Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays. Nat Methods 2006 8.52
5 A three-dimensional model of the yeast genome. Nature 2010 7.01
6 Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors. Genome Res 2012 4.80
7 A critical assessment of Mus musculus gene function prediction using integrated genomic evidence. Genome Biol 2008 4.78
8 Unsupervised segmentation of continuous genomic data. Bioinformatics 2007 3.35
9 Widely distributed noncoding purifying selection in the human genome. Proc Natl Acad Sci U S A 2007 2.71
10 Identification of higher-order functional domains in the human ENCODE regions. Genome Res 2007 2.62
11 Classification of clear-cell sarcoma as a subtype of melanoma by genomic profiling. J Clin Oncol 2003 2.18
12 Rapid and accurate peptide identification from tandem mass spectra. J Proteome Res 2008 2.13
13 Classification and subtype prediction of adult soft tissue sarcoma by functional genomics. Am J Pathol 2003 1.94
14 Mammalian X upregulation is associated with enhanced transcription initiation, RNA half-life, and MOF-mediated H4K16 acetylation. Dev Cell 2013 1.61
15 Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast. Genome Res 2013 1.47
16 The spring-loaded genome: nucleosome redistributions are widespread, transient, and DNA-directed. Genome Res 2013 1.27
17 A dynamic Bayesian network for identifying protein-binding footprints from single molecule-based sequencing data. Bioinformatics 2010 1.26
18 Independent and complementary methods for large-scale structural analysis of mammalian chromatin. Genome Res 2007 1.19
19 Maintaining replication origins in the face of genomic change. Genome Res 2012 1.10
20 Learning sparse models for a dynamic Bayesian network classifier of protein secondary structure. BMC Bioinformatics 2011 1.09
21 A new pairwise kernel for biological network inference with support vector machines. BMC Bioinformatics 2007 1.05
22 Large-scale prediction of protein-protein interactions from structures. BMC Bioinformatics 2010 1.03
23 Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene expression in the developing C. elegans embryo. BMC Bioinformatics 2010 0.94
24 Genomic interaction profiles in breast cancer reveal altered chromatin architecture. PLoS One 2013 0.88
25 Genomic data visualization on the Web. Bioinformatics 2004 0.85
26 Combining classifiers for improved classification of proteins from sequence or structure. BMC Bioinformatics 2008 0.83
27 Precursor charge state prediction for electron transfer dissociation tandem mass spectra. J Proteome Res 2010 0.82
28 A genome-wide 3C-method for characterizing the three-dimensional architectures of genomes. Methods 2012 0.82
29 Analysis of secondary structure in proteins by chemical cross-linking coupled to MS. Proteomics 2012 0.77
30 A statistical approach to peptide identification from clustered tandem mass spectrometry data. Proceedings (IEEE Int Conf Bioinformatics Biomed) 2012 0.76