Published in PeerJ on November 12, 2013
MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (2003) 130.85
MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics (2001) 101.31
MODELTEST: testing the model of DNA substitution. Bioinformatics (1998) 101.19
DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics (2003) 32.63
TCS: a computer program to estimate gene genealogies. Mol Ecol (2000) 27.89
Model selection and model averaging in phylogenetics: advantages of akaike information criterion and bayesian approaches over likelihood ratio tests. Syst Biol (2004) 22.36
Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc Natl Acad Sci U S A (1989) 12.95
Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics (2004) 7.79
Community diversity: relative roles of local and regional processes. Science (1987) 7.01
Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics (2004) 6.88
Time dependency of molecular rate estimates and systematic overestimation of recent divergence times. Mol Biol Evol (2005) 6.77
Statistical properties of new neutrality tests against population growth. Mol Biol Evol (2002) 5.95
Exploring the Phylogenetic Structure of Ecological Communities: An Example for Rain Forest Trees. Am Nat (2000) 5.66
Pleistocene phylogeographic effects on avian populations and the speciation process. Proc Biol Sci (1998) 4.26
Calibrating the avian molecular clock. Mol Ecol (2008) 2.90
Time-dependent rates of molecular evolution. Mol Ecol (2011) 2.82
An emerging synthesis between community ecology and evolutionary biology. Trends Ecol Evol (2007) 2.76
Evolution of ecological differences in the Old World leaf warblers. Nature (1992) 2.16
A mitogenomic timescale for birds detects variable phylogenetic rates of molecular evolution and refutes the standard molecular clock. Mol Biol Evol (2006) 2.06
Ice sheets promote speciation in boreal birds. Proc Biol Sci (2004) 2.00
History and diversity: explorations at the intersection of ecology and evolution. Am Nat (2007) 1.95
New mitochondrial DNA data affirm the importance of Pleistocene speciation in North American birds. Evolution (2004) 1.84
Cryptic genetic variation and paraphyly in ravens. Proc Biol Sci (2000) 1.83
Not as the crow flies: a historical explanation for circuitous migration in Swainson's thrush (Catharus ustulatus). Proc Biol Sci (2002) 1.72
Investigating the evolutionary history of the Pacific Northwest mesic forest ecosystem: hypothesis testing within a comparative phylogeographic framework. Evolution (2005) 1.62
Simultaneous effects of phylogenetic niche conservatism and competition on avian community structure. Ecology (2006) 1.57
msBayes: pipeline for testing comparative phylogeographic histories using hierarchical approximate Bayesian computation. BMC Bioinformatics (2007) 1.45
Historical diversification of migration patterns in a passerine bird. Evolution (2004) 1.44
Structural conservation and variation in the mitochondrial control region of fringilline finches (Fringilla spp.) and the greenfinch (Carduelis chloris). Mol Biol Evol (1997) 1.35
Test for simultaneous divergence using approximate Bayesian computation. Evolution (2006) 1.34
Genetic, morphological, and ecological characterization of a hybrid zone that spans a migratory divide. Evolution (2007) 1.16
Nuclear loci and coalescent methods support ancient hybridization as cause of mitochondrial paraphyly between gadwall and falcated duck (Anas spp.). Evolution (2007) 1.13
Phylogeography and pleistocene evolution in the North American black bear. Mol Biol Evol (1997) 1.13
Phylogeography and genetic structure of northern populations of the yellow warbler (Dendroica petechia). Mol Ecol (2000) 1.12
Speciation and rapid phenotypic differentiation in the yellow-rumped warbler Dendroica coronata complex. Mol Ecol (2007) 1.06
Phylogeographical approaches to assessing demographic connectivity between breeding and overwintering regions in a Nearctic-Neotropical warbler (Wilsonia pusilla). Mol Ecol (2002) 1.05
Glacial cycles and the tempo of avian speciation. Trends Ecol Evol (2004) 1.03
Cryptic speciation in a Holarctic passerine revealed by genetic and bioacoustic analyses. Mol Ecol (2008) 1.02
A molecular phylogenetic analysis of the "true thrushes" (Aves: Turdinae). Mol Phylogenet Evol (2005) 1.01
Gene trees, species trees and Earth history combine to shed light on the evolution of migration in a model avian system. Mol Ecol (2013) 0.99
A road map for molecular ecology. Mol Ecol (2013) 0.95
Molecular systematics of a speciose, cosmopolitan songbird genus: defining the limits of, and relationships among, the Turdus thrushes. Mol Phylogenet Evol (2006) 0.95
Postglacial expansion of the southern red-backed vole (Clethrionomys gapperi) in North America. Mol Ecol (2005) 0.95
Ancestral polymorphisms in genetic markers obscure detection of evolutionarily distinct populations in the endangered Florida grasshopper sparrow (Ammodramus savannarum floridanus). Mol Ecol (2003) 0.95
Genetic divergence and migration patterns in a North American passerine bird: implications for evolution and conservation. Mol Ecol (2006) 0.91
Late Pleistocene divergence between eastern and western populations of wood ducks (Aix sponsa) inferred by the 'isolation with migration' coalescent method. Mol Ecol (2005) 0.89
High latitudes and high genetic diversity: phylogeography of a widespread boreal bird, the gray jay (Perisoreus canadensis). Mol Phylogenet Evol (2012) 0.87
Cryptic diversity in a widespread North American songbird: phylogeography of the Brown Creeper (Certhia americana). Mol Phylogenet Evol (2010) 0.85
Phylogeography of the white-breasted nuthatch (Sitta carolinensis): diversification in North American pine and oak woodlands. Mol Ecol (2007) 0.84
When east meets west: population structure of a high-latitude resident species, the boreal chickadee (Poecile hudsonicus). Heredity (Edinb) (2013) 0.83
Cryptic species as a window on diversity and conservation. Trends Ecol Evol (2006) 10.21
Phylogenetic diversity among low-virulence newcastle disease viruses from waterfowl and shorebirds and comparison of genotype distributions to those of poultry-origin isolates. J Virol (2007) 2.47
Phylogenetic analyses of type A influenza genes in natural reservoir species in North America reveals genetic variation. Virus Res (2005) 2.06
More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs. Biol Lett (2012) 1.85
Movements of birds and avian influenza from Asia into Alaska. Emerg Infect Dis (2007) 1.78
Coevolution of male and female genital morphology in waterfowl. PLoS One (2007) 1.36
Phylogenetics of wigeons and allies (Anatidae: Anas): the importance of sampling multiple loci and multiple individuals. Mol Phylogenet Evol (2005) 1.01
An avian influenza virus from waterfowl in South America contains genes from North American avian and equine lineages. Avian Dis (2007) 0.99
Clarifying the systematics of an enigmatic avian lineage: what is a bombycillid? Mol Phylogenet Evol (2008) 0.96
Natural history: Small collections make a big impact. Nature (2013) 0.94
Rapid divergence and postglacial colonization in western North American Steller's jays (Cyanocitta stelleri). Mol Ecol (2005) 0.93
Out of Amazonia again and again: episodic crossing of the Andes promotes diversification in a lowland forest flycatcher. Proc Biol Sci (2008) 0.93
Northwestern song sparrow populations show genetic effects of sequential colonization. Mol Ecol (2005) 0.91
Rarity of influenza A virus in spring shorebirds, southern Alaska. Emerg Infect Dis (2008) 0.90
Biomonitoring of contaminants in birds from two trophic levels in the North Pacific. Environ Toxicol Chem (2004) 0.89
Mito-nuclear discord in six congeneric lineages of Holarctic ducks (genus Anas). Mol Ecol (2014) 0.85
Transcriptome analysis of a North American songbird, Melospiza melodia. DNA Res (2012) 0.84
Effects of Pleistocene glaciations on population structure of North American chestnut-backed chickadees. Mol Ecol (2006) 0.83
Signatures of high-altitude adaptation in the major hemoglobin of five species of andean dabbling ducks. Am Nat (2009) 0.82
Do common eiders nest in kin groups? Microgeographic genetic structure in a philopatric sea duck. Mol Ecol (2010) 0.81
Multilocus coalescent analysis of haemoglobin differentiation between low- and high-altitude populations of crested ducks (Lophonetta specularioides). Mol Ecol (2011) 0.81
Short-term hurricane impacts on a neotropical community of marked birds and implications for early-stage community resilience. PLoS One (2010) 0.81
Working through polytomies: auklets revisited. Mol Phylogenet Evol (2009) 0.80
Heterogeneity in genetic diversity among non-coding loci fails to fit neutral coalescent models of population history. PLoS One (2012) 0.80
Reinterpreting the origins of flamingo lice: cospeciation or host-switching? Biol Lett (2006) 0.80
Discord reigns among nuclear, mitochondrial and phenotypic estimates of divergence in nine lineages of trans-Beringian birds. Mol Ecol (2010) 0.79
Decadal changes and delayed avian species losses due to deforestation in the northern Neotropics. PeerJ (2013) 0.78
Population structure and genetic diversity of moose in Alaska. J Hered (2008) 0.78
Phylogenetics of a recent radiation in the mallards and allies (Aves: Anas): inferences from a genomic transect and the multispecies coalescent. Mol Phylogenet Evol (2013) 0.78
A parapatric propensity for breeding precludes the completion of speciation in common teal (Anas crecca, sensu lato). Mol Ecol (2012) 0.78
Neotropical birds show a humped distribution of within-population genetic diversity along a latitudinal transect. Ecol Lett (2010) 0.77
Genetic and phenotypic divergence between low- and high-altitude populations of two recently diverged cinnamon teal subspecies. Evolution (2012) 0.77
Heteropatric speciation in a duck, Anas crecca. Mol Ecol (2013) 0.75
Diversification at high latitudes: speciation of buntings in the genus Plectrophenax inferred from mitochondrial and nuclear markers. Mol Ecol (2010) 0.75