Collective prediction of protein functions from protein-protein interaction networks.

Protein functional properties prediction in sparsely-label PPI networks through regularized non-negative matrix factorization. BMC Syst Biol (2015) 0.88

Semi-supervised multi-label collective classification ensemble for functional genomics. BMC Genomics (2014) 0.83

Functional Annotations of Paralogs: A Blessing and a Curse. Life (Basel) (2016) 0.75

Pfam: clans, web tools and services. Nucleic Acids Res (2006) 34.83

PROSITE, a protein domain database for functional characterization and annotation. Nucleic Acids Res (2009) 7.47

Protein function in the post-genomic era. Nature (2000) 7.00

Network-based prediction of protein function. Mol Syst Biol (2007) 6.13

CFinder: locating cliques and overlapping modules in biological networks. Bioinformatics (2006) 4.27

Exploiting indirect neighbours and topological weight to predict protein function from protein-protein interactions. Bioinformatics (2006) 3.94

Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network. Genome Biol (2003) 3.80

Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps. Bioinformatics (2005) 3.70

Protein function prediction via graph kernels. Bioinformatics (2005) 2.07

RRW: repeated random walks on genome-scale protein networks for local cluster discovery. BMC Bioinformatics (2009) 1.68

Predicting gene function in Saccharomyces cerevisiae. Bioinformatics (2003) 1.32

An overview of in silico protein function prediction. Arch Microbiol (2010) 1.04

Identifying projected clusters from gene expression profiles. J Biomed Inform (2004) 1.39

Control of Boolean networks: hardness results and algorithms for tree structured networks. J Theor Biol (2006) 1.38

An approximation method for solving the steady-state probability distribution of probabilistic Boolean networks. Bioinformatics (2007) 1.05

Selection of regularization parameter in total variation image restoration. J Opt Soc Am A Opt Image Sci Vis (2009) 1.02

Algorithms for finding small attractors in Boolean networks. EURASIP J Bioinform Syst Biol (2007) 1.00

On sparse Fisher discriminant method for microarray data analysis. Bioinformation (2007) 0.96

Simulation study in Probabilistic Boolean Network models for genetic regulatory networks. Int J Data Min Bioinform (2007) 0.92

Automated variable weighting in k-means type clustering. IEEE Trans Pattern Anal Mach Intell (2005) 0.91

SNP selection and classification of genome-wide SNP data using stratified sampling random forests. IEEE Trans Nanobioscience (2012) 0.90

Protein functional properties prediction in sparsely-label PPI networks through regularized non-negative matrix factorization. BMC Syst Biol (2015) 0.88

A semisupervised segmentation model for collections of images. IEEE Trans Image Process (2012) 0.87

SKM-SNP: SNP markers detection method. J Biomed Inform (2009) 0.83

Semi-supervised multi-label collective classification ensemble for functional genomics. BMC Genomics (2014) 0.83

A novel peak detection approach with chemical noise removal using short-time FFT for prOTOF MS data. Proteomics (2009) 0.83

Multiplicative noise removal via a learned dictionary. IEEE Trans Image Process (2012) 0.83

Alternating direction method of multipliers for nonlinear image restoration problems. IEEE Trans Image Process (2014) 0.83

Genome-wide association data classification and SNPs selection using two-stage quality-based Random Forests. BMC Genomics (2015) 0.82

Fast nonconvex nonsmooth minimization methods for image restoration and reconstruction. IEEE Trans Image Process (2010) 0.82

SNP and gene networks construction and analysis from classification of copy number variations data. BMC Bioinformatics (2011) 0.81

Blind deconvolution using generalized cross-validation approach to regularization parameter estimation. IEEE Trans Image Process (2010) 0.80

Manifold Learning for Multivariate Variable-Length Sequences With an Application to Similarity Search. IEEE Trans Neural Netw Learn Syst (2015) 0.79

Prior knowledge based mining functional modules from Yeast PPI networks with gene ontology. BMC Bioinformatics (2010) 0.79

Strategies for identifying statistically significant dense regions in microarray data. IEEE/ACM Trans Comput Biol Bioinform (2007) 0.79

Extensions of kmeans-type algorithms: a new clustering framework by integrating intracluster compactness and intercluster separation. IEEE Trans Neural Netw Learn Syst (2014) 0.78

Functional Module Analysis for Gene Coexpression Networks with Network Integration. IEEE/ACM Trans Comput Biol Bioinform (2015) 0.78

MultiFacTV: module detection from higher-order time series biological data. BMC Genomics (2013) 0.75

MR-NTD: Manifold Regularization Nonnegative Tucker Decomposition for Tensor Data Dimension Reduction and Representation. IEEE Trans Neural Netw Learn Syst (2017) 0.75

A variational method for multiple-image blending. IEEE Trans Image Process (2011) 0.75

Efficient total variation minimization methods for color image restoration. IEEE Trans Image Process (2008) 0.75

Sparse canonical correlation analysis: new formulation and algorithm. IEEE Trans Pattern Anal Mach Intell (2013) 0.75

Online Heterogeneous Transfer by Hedge Ensemble of Offline and Online Decisions. IEEE Trans Neural Netw Learn Syst (2017) 0.75

Automatic regularization parameter selection by generalized cross-validation for total variational Poisson noise removal. Appl Opt (2017) 0.75

SNMFCA: supervised NMF-based image classification and annotation. IEEE Trans Image Process (2012) 0.75

Subspace Weighting Co-Clustering of Gene Expression Data. IEEE/ACM Trans Comput Biol Bioinform (2017) 0.75

On the total variation dictionary model. IEEE Trans Image Process (2009) 0.75

Post-processing strategies for improving local gene expression pattern analysis. Int J Data Min Bioinform (2013) 0.75

Guest editorial: bioinformatics and computational systems biology. IEEE/ACM Trans Comput Biol Bioinform (2012) 0.75

Visual Grounding Via Accumulated Attention. IEEE Trans Pattern Anal Mach Intell (2022) 0.75

Construction and analysis of single nucleotide polymorphism-single nucleotide polymorphism interaction networks. IET Syst Biol (2013) 0.75

Non-Lipschitz lp-regularization and box constrained model for image restoration. IEEE Trans Image Process (2012) 0.75

Breaking Winner-Takes-All: Iterative-Winners-Out Networks for Weakly Supervised Temporal Action Localization. IEEE Trans Image Process (2019) 0.75

A semi-supervised approach to projected clustering with applications to microarray data. Int J Data Min Bioinform (2009) 0.75

Multidimensional latent semantic analysis using term spatial information. IEEE Trans Cybern (2013) 0.75

ML-Tree: a tree-structure-based approach to multilabel learning. IEEE Trans Neural Netw Learn Syst (2014) 0.75

Multi-label Classification by Semi-supervised Singular Value Decomposition. IEEE Trans Image Process (2017) 0.75

Dictionary learning-based subspace structure identification in spectral clustering. IEEE Trans Neural Netw Learn Syst (2013) 0.75

MultiVCRank With Applications to Image Retrieval. IEEE Trans Image Process (2016) 0.75

Learning Transferred Weights From Co-Occurrence Data for Heterogeneous Transfer Learning. IEEE Trans Neural Netw Learn Syst (2015) 0.75

Construction of gene networks with hybrid approach from expression profile and gene ontology. IEEE Trans Inf Technol Biomed (2009) 0.75

Sparse label-indicator optimization methods for image classification. IEEE Trans Image Process (2014) 0.75

Robust and Non-Negative Collective Matrix Factorization for Text-to-Image Transfer Learning. IEEE Trans Image Process (2015) 0.75