Published in BMC Biotechnol on March 21, 2014
Metabolic responses of willow (Salix purpurea L.) leaves to mycorrhization as revealed by mass spectrometry and (1)H NMR spectroscopy metabolite profiling. Front Plant Sci (2015) 0.78
Dynamic substrate preferences predict metabolic properties of a simple microbial consortium. BMC Bioinformatics (2017) 0.76
Metabolomics--the link between genotypes and phenotypes. Plant Mol Biol (2002) 11.36
Hydrolysis of lignocellulosic materials for ethanol production: a review. Bioresour Technol (2002) 7.01
Centering, scaling, and transformations: improving the biological information content of metabolomics data. BMC Genomics (2006) 5.04
Pretreatment technologies for an efficient bioethanol production process based on enzymatic hydrolysis: A review. Bioresour Technol (2009) 4.22
Bio-ethanol--the fuel of tomorrow from the residues of today. Trends Biotechnol (2006) 3.87
Inhibition of ethanol-producing yeast and bacteria by degradation products produced during pre-treatment of biomass. Appl Microbiol Biotechnol (2004) 3.76
Partial Least Squares (PLS) methods for neuroimaging: a tutorial and review. Neuroimage (2010) 2.59
Minimal metabolic engineering of Saccharomyces cerevisiae for efficient anaerobic xylose fermentation: a proof of principle. FEMS Yeast Res (2004) 1.98
Identification of furfural as a key toxin in lignocellulosic hydrolysates and evolution of a tolerant yeast strain. Microb Biotechnol (2008) 1.88
Effect of specific growth rate on fermentative capacity of baker's yeast. Appl Environ Microbiol (1998) 1.75
Influence of lignocellulose-derived aromatic compounds on oxygen-limited growth and ethanolic fermentation by Saccharomyces cerevisiae. Appl Biochem Biotechnol (2000) 1.68
Identification and characterization of the furfural and 5-(hydroxymethyl)furfural degradation pathways of Cupriavidus basilensis HMF14. Proc Natl Acad Sci U S A (2010) 1.63
A review of lignocellulose bioconversion using enzymatic hydrolysis and synergistic cooperation between enzymes--factors affecting enzymes, conversion and synergy. Biotechnol Adv (2012) 1.63
Adaptive response of yeasts to furfural and 5-hydroxymethylfurfural and new chemical evidence for HMF conversion to 2,5-bis-hydroxymethylfuran. J Ind Microbiol Biotechnol (2004) 1.61
Microbial metabolomics: replacing trial-and-error by the unbiased selection and ranking of targets. J Ind Microbiol Biotechnol (2005) 1.54
Assessing the statistical validity of proteomics based biomarkers. Anal Chim Acta (2007) 1.49
Effects of Ca(OH)(2) treatments ("overliming") on the composition and toxicity of bagasse hemicellulose hydrolysates. Biotechnol Bioeng (2000) 1.49
Isolation and characterization of Cupriavidus basilensis HMF14 for biological removal of inhibitors from lignocellulosic hydrolysate. Microb Biotechnol (2009) 1.26
Potential inhibitors from wet oxidation of wheat straw and their effect on ethanol production of Saccharomyces cerevisiae: wet oxidation and fermentation by yeast. Biotechnol Bioeng (2003) 1.25
Tolerance and adaptation of ethanologenic yeasts to lignocellulosic inhibitory compounds. Biotechnol Bioeng (2006) 1.22
An antibiotic from maggots. Nature (1957) 1.20
What is metabolomics all about? Biotechniques (2009) 1.19
Characterization of degradation products from alkaline wet oxidation of wheat straw. Bioresour Technol (2002) 1.03
The RIM101 pathway has a role in Saccharomyces cerevisiae adaptive response and resistance to propionic acid and other weak acids. FEMS Yeast Res (2009) 0.99
Protein expression during lag phase and growth initiation in Saccharomyces cerevisiae. Int J Food Microbiol (2002) 0.94
High-performance liquid chromatography method for simultaneous determination of aliphatic acid, aromatic acid and neutral degradation products in biomass pretreatment hydrolysates. J Chromatogr A (2005) 0.92
Identification and characterization of fermentation inhibitors formed during hydrothermal treatment and following SSF of wheat straw. Appl Microbiol Biotechnol (2009) 0.92
Decarboxylation of sorbic acid by spoilage yeasts is associated with the PAD1 gene. Appl Environ Microbiol (2007) 0.90
Identification of crucial yeast inhibitors in bio-ethanol and improvement of fermentation at high pH and high total solids. Bioresour Technol (2011) 0.90
Effect of pretreatment severity on the conversion of barley straw to fermentable substrates and the release of inhibitory compounds. Bioresour Technol (2011) 0.86
Effect of nutrients on fermentation of pretreated wheat straw at very high dry matter content by Saccharomyces cerevisiae. Appl Biochem Biotechnol (2008) 0.85
Rapid quantification of major reaction products formed during thermochemical pretreatment of lignocellulosic biomass using GC-MS. J Chromatogr B Analyt Technol Biomed Life Sci (2011) 0.80
Biochemical characterization of ethanol-dependent reduction of furfural by alcohol dehydrogenases. Biodegradation (2011) 0.78
Metabolomics as a tool for target identification in strain improvement: the influence of phenotype definition. Microbiology (2010) 0.78
Preparation and evaluation of lignocellulosic biomass hydrolysates for growth by ethanologenic yeasts. Methods Mol Biol (2012) 0.78
Centering, scaling, and transformations: improving the biological information content of metabolomics data. BMC Genomics (2006) 5.04
Large-scale human metabolomics studies: a strategy for data (pre-) processing and validation. Anal Chem (2006) 3.24
Microbial metabolomics with gas chromatography/mass spectrometry. Anal Chem (2006) 2.02
Metabolic profiling of the response to an oral glucose tolerance test detects subtle metabolic changes. PLoS One (2009) 1.87
Microbial metabolomics: toward a platform with full metabolome coverage. Anal Biochem (2007) 1.83
Atherosclerosis and liver inflammation induced by increased dietary cholesterol intake: a combined transcriptomics and metabolomics analysis. Genome Biol (2007) 1.80
Multivariate paired data analysis: multilevel PLSDA versus OPLSDA. Metabolomics (2009) 1.58
Analysis of longitudinal metabolomics data. Bioinformatics (2004) 1.54
Double-check: validation of diagnostic statistics for PLS-DA models in metabolomics studies. Metabolomics (2011) 1.51
Quantitative analysis of target components by comprehensive two-dimensional gas chromatography. J Chromatogr A (2003) 1.50
Discovering gene expression patterns in time course microarray experiments by ANOVA-SCA. Bioinformatics (2007) 1.50
Assessing the statistical validity of proteomics based biomarkers. Anal Chim Acta (2007) 1.49
Multilevel data analysis of a crossover designed human nutritional intervention study. J Proteome Res (2008) 1.45
Quantitative proteomics and metabolomics analysis of normal human cerebrospinal fluid samples. Mol Cell Proteomics (2010) 1.36
Metabolic fate of polyphenols in the human superorganism. Proc Natl Acad Sci U S A (2010) 1.34
Understanding and classifying metabolite space and metabolite-likeness. PLoS One (2011) 1.29
A classification model for the Leiden proteomics competition. Stat Appl Genet Mol Biol (2008) 1.16
Biomarkers for lysosomal storage disorders: identification and application as exemplified by chitotriosidase in Gaucher disease. Acta Paediatr Suppl (2008) 1.15
Microbial renewable feedstock utilization: a substrate-oriented approach. Bioeng Bugs (2011) 1.10
Microbial production host selection for converting second-generation feedstocks into bioproducts. Microb Cell Fact (2009) 1.10
How to distinguish healthy from diseased? Classification strategy for mass spectrometry-based clinical proteomics. Proteomics (2007) 1.07
Quantitative profiling of bile acids in biofluids and tissues based on accurate mass high resolution LC-FT-MS: compound class targeting in a metabolomics workflow. J Chromatogr B Analyt Technol Biomed Life Sci (2008) 1.06
Metabolomics of cerebrospinal fluid reveals changes in the central nervous system metabolism in a rat model of multiple sclerosis. Metabolomics (2011) 1.06
Analyzing longitudinal microbial metabolomics data. J Proteome Res (2009) 1.04
Optimized time alignment algorithm for LC-MS data: correlation optimized warping using component detection algorithm-selected mass chromatograms. Anal Chem (2008) 1.04
Performance optimization of spectroscopic process analyzers. Anal Chem (2004) 1.02
Phenotyping tea consumers by nutrikinetic analysis of polyphenolic end-metabolites. J Proteome Res (2009) 1.01
Time alignment algorithms based on selected mass traces for complex LC-MS data. J Proteome Res (2010) 1.00
Quantitative Raman reaction monitoring using the solvent as internal standard. Anal Chem (2005) 1.00
The photographer and the greenhouse: how to analyse plant metabolomics data. Phytochem Anal (2009) 0.99
Statistical data processing in clinical proteomics. J Chromatogr B Analyt Technol Biomed Life Sci (2007) 0.99
Statistical validation of megavariate effects in ASCA. BMC Bioinformatics (2007) 0.98
The effect of preanalytical factors on stability of the proteome and selected metabolites in cerebrospinal fluid (CSF). J Proteome Res (2009) 0.98
Endocrine pulse identification using penalized methods and a minimum set of assumptions. Am J Physiol Endocrinol Metab (2009) 0.97
Gender-dependent associations of metabolite profiles and body fat distribution in a healthy population with central obesity: towards metabolomics diagnostics. OMICS (2012) 0.97
A structured overview of simultaneous component based data integration. BMC Bioinformatics (2009) 0.96
Automated pipeline for de novo metabolite identification using mass-spectrometry-based metabolomics. Anal Chem (2013) 0.95
Estimating confidence intervals for principal component loadings: a comparison between the bootstrap and asymptotic results. Br J Math Stat Psychol (2007) 0.95
A critical assessment of feature selection methods for biomarker discovery in clinical proteomics. Mol Cell Proteomics (2012) 0.94
The impact of delayed storage on the measured proteome and metabolome of human cerebrospinal fluid. Clin Chem (2011) 0.93
OMG: Open Molecule Generator. J Cheminform (2012) 0.93
A systematic approach to obtain validated partial least square models for predicting lipoprotein subclasses from serum NMR spectra. Anal Chem (2013) 0.90
Aspergillus niger RhaR, a regulator involved in L-rhamnose release and catabolism. Appl Microbiol Biotechnol (2014) 0.90
Effects of organically and conventionally produced feed on biomarkers of health in a chicken model. Br J Nutr (2009) 0.90
Metabolic profiling of ultrasmall sample volumes with GC/MS: from microliter to nanoliter samples. Anal Chem (2010) 0.90
Insight in modulation of inflammation in response to diclofenac intervention: a human intervention study. BMC Med Genomics (2010) 0.89
Crossfit analysis: a novel method to characterize the dynamics of induced plant responses. BMC Bioinformatics (2009) 0.89
Gaucher disease: a model disorder for biomarker discovery. Expert Rev Proteomics (2009) 0.89
Individual differences in metabolomics: individualised responses and between-metabolite relationships. Metabolomics (2012) 0.88
DISCO-SCA and properly applied GSVD as swinging methods to find common and distinctive processes. PLoS One (2012) 0.88
Between Metabolite Relationships: an essential aspect of metabolic change. Metabolomics (2011) 0.87
Interpretation and visualization of non-linear data fusion in kernel space: study on metabolomic characterization of progression of multiple sclerosis. PLoS One (2012) 0.86
Metabolic network discovery through reverse engineering of metabolome data. Metabolomics (2009) 0.86
The effect of environmental conditions on extracellular protease activity in controlled fermentations of Aspergillus niger. Microbiology (2009) 0.85
A lipidomic analysis approach to evaluate the response to cholesterol-lowering food intake. Metabolomics (2011) 0.85
Improving the analysis of designed studies by combining statistical modelling with study design information. BMC Bioinformatics (2009) 0.85
MetDFBA: incorporating time-resolved metabolomics measurements into dynamic flux balance analysis. Mol Biosyst (2014) 0.84
Reverse engineering of metabolic networks, a critical assessment. Mol Biosyst (2010) 0.84
Comprehensive analysis of the metabolome of Pseudomonas putida S12 grown on different carbon sources. Mol Biosyst (2008) 0.84
Application of NMR-based metabonomics suggests a relationship between betaine absorption and elevated creatine plasma concentrations in catheterised sows. Br J Nutr (2012) 0.83
Metabolomics data exploration guided by prior knowledge. Anal Chim Acta (2009) 0.83
Automated combustion accelerator mass spectrometry for the analysis of biomedical samples in the low attomole range. Anal Chem (2014) 0.83
Parallel demodulation system and signal-processing method for extrinsic Fabry-Perot interferometer and fiber Bragg grating sensors. Opt Lett (2005) 0.81
The intracellular galactoglycome in Trichoderma reesei during growth on lactose. Appl Microbiol Biotechnol (2013) 0.81
Use of prior knowledge for the analysis of high-throughput transcriptomics and metabolomics data. BMC Syst Biol (2014) 0.81
Simplivariate models: uncovering the underlying biology in functional genomics data. PLoS One (2011) 0.80
How informative is your kinetic model?: using resampling methods for model invalidation. BMC Syst Biol (2014) 0.80
Integrating functional genomics data using maximum likelihood based simultaneous component analysis. BMC Bioinformatics (2009) 0.80
Inferring protein-protein interaction complexes from immunoprecipitation data. BMC Res Notes (2013) 0.79
Simplivariate models: ideas and first examples. PLoS One (2008) 0.79
New figures of merit for comprehensive functional genomics data: the metabolomics case. Anal Chem (2011) 0.79
Global test for metabolic pathway differences between conditions. Anal Chim Acta (2012) 0.79
Metabolomics as a tool for target identification in strain improvement: the influence of phenotype definition. Microbiology (2010) 0.78