Published in PLoS One on June 05, 2014
Development and validation of the San Diego Early Test Score to predict acute and early HIV infection risk in men who have sex with men. Clin Infect Dis (2015) 1.28
Using Molecular HIV Surveillance Data to Understand Transmission Between Subpopulations in the United States. J Acquir Immune Defic Syndr (2015) 1.09
Impact of sampling density on the extent of HIV clustering. AIDS Res Hum Retroviruses (2014) 0.89
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The International Dimension of the U.S. HIV Transmission Network and Onward Transmission of HIV Recently Imported into the United States. AIDS Res Hum Retroviruses (2016) 0.85
Targeting HIV Prevention Based on Molecular Epidemiology Among Deeply Sampled Subnetworks of Men Who Have Sex With Men. Clin Infect Dis (2015) 0.84
Characterization of HIV Transmission in South-East Austria. PLoS One (2016) 0.83
Molecular analysis allows inference into HIV transmission among young men who have sex with men in the United States. AIDS (2015) 0.83
The HIV treatment cascade in acutely infected people: informing global guidelines. Curr Opin HIV AIDS (2015) 0.81
Importance of Viral Sequence Length and Number of Variable and Informative Sites in Analysis of HIV Clustering. AIDS Res Hum Retroviruses (2015) 0.80
Prevalence of Transmitted HIV Drug Resistance Among Recently Infected Persons in San Diego, CA 1996-2013. J Acquir Immune Defic Syndr (2016) 0.78
The dynamics of the HIV epidemic among men who have sex with men (MSM) from 2005 to 2012 in Shenzhen, China. Sci Rep (2016) 0.77
Social and Genetic Networks of HIV-1 Transmission in New York City. PLoS Pathog (2017) 0.77
Genetic diversity, seasonality and transmission network of human metapneumovirus: identification of a unique sub-lineage of the fusion and attachment genes. Sci Rep (2016) 0.76
Molecular epidemiology identifies HIV transmission networks associated with younger age and heterosexual exposure among Korean individuals. J Med Virol (2016) 0.76
Spatiotemporal dynamics of HIV-1 transmission in France (1999-2014) and impact of targeted prevention strategies. Retrovirology (2017) 0.75
A molecular transmission network of recent hepatitis C infection in people with and without HIV: Implications for targeted treatment strategies. J Viral Hepat (2016) 0.75
How can we detect HIV during the acute or primary stage of infection? Expert Rev Mol Diagn (2016) 0.75
Molecular Epidemiology of Human Immunodeficiency Virus. Infect Chemother (2017) 0.75
Reconstructing contact network parameters from viral phylogenies. Virus Evol (2016) 0.75
Enhanced use of phylogenetic data to inform public health approaches to HIV among men who have sex with men. Sex Health (2016) 0.75
Concurrency and HIV transmission network characteristics among MSM with recent HIV infection. AIDS (2016) 0.75
Expanding HIV-1 subtype B transmission networks among men who have sex with men in Poland. PLoS One (2017) 0.75
Impacts and shortcomings of genetic clustering methods for infectious disease outbreaks. Virus Evol (2016) 0.75
Identification and evolutionary dynamics of two novel human coronavirus OC43 genotypes associated with acute respiratory infections: phylogenetic, spatiotemporal and transmission network analyses. Emerg Microbes Infect (2017) 0.75
Viral Genetic Linkage Analysis in the Presence of Missing Data. PLoS One (2015) 0.75
HIV-1 Infection and Transmission Networks of Younger People in Chicago, Illinois, 2005-2011. Public Health Rep (2016) 0.75
Determinants of HIV phylogenetic clustering in Chicago among young black men who have sex with men from the uConnect cohort. J Acquir Immune Defic Syndr (2017) 0.75
Identification of major routes of HIV transmission throughout Mesoamerica. Infect Genet Evol (2017) 0.75
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Viral load and heterosexual transmission of human immunodeficiency virus type 1. Rakai Project Study Group. N Engl J Med (2000) 41.18
Rates of HIV-1 transmission per coital act, by stage of HIV-1 infection, in Rakai, Uganda. J Infect Dis (2005) 21.08
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New testing strategy to detect early HIV-1 infection for use in incidence estimates and for clinical and prevention purposes. JAMA (1998) 9.32
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High rates of forward transmission events after acute/early HIV-1 infection. J Infect Dis (2007) 7.70
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Global trends in molecular epidemiology of HIV-1 during 2000-2007. AIDS (2011) 6.26
Geographically masking health data to preserve confidentiality. Stat Med (1999) 4.95
Episodic sexual transmission of HIV revealed by molecular phylodynamics. PLoS Med (2008) 4.76
Enhanced CD4+ T-cell recovery with earlier HIV-1 antiretroviral therapy. N Engl J Med (2013) 4.26
Amplified transmission of HIV-1: comparison of HIV-1 concentrations in semen and blood during acute and chronic infection. AIDS (2007) 3.72
2011 update of the drug resistance mutations in HIV-1. Top Antivir Med (2011) 3.66
Sexual network structure and the spread of HIV in Africa: evidence from Likoma Island, Malawi. AIDS (2007) 3.57
Performance characteristics of a new less sensitive HIV-1 enzyme immunoassay for use in estimating HIV seroincidence. J Acquir Immune Defic Syndr (2003) 3.14
Scale-free networks and sexually transmitted diseases: a description of observed patterns of sexual contacts in Britain and Zimbabwe. Sex Transm Dis (2004) 2.75
Evaluation of an HIV nucleic acid testing program with automated Internet and voicemail systems to deliver results. Ann Intern Med (2010) 2.69
Molecular phylodynamics of the heterosexual HIV epidemic in the United Kingdom. PLoS Pathog (2009) 2.10
Transmission network parameters estimated from HIV sequences for a nationwide epidemic. J Infect Dis (2011) 1.98
A public health model for the molecular surveillance of HIV transmission in San Diego, California. AIDS (2009) 1.81
Viral phylodynamics. PLoS Comput Biol (2013) 1.71
The global transmission network of HIV-1. J Infect Dis (2013) 1.68
Nosocomial transmission of extensively drug-resistant tuberculosis in a rural hospital in South Africa. J Infect Dis (2012) 1.65
Molecular epidemiology of the novel coronavirus that causes severe acute respiratory syndrome. Lancet (2004) 1.51
HIV forensics: pitfalls and acceptable standards in the use of phylogenetic analysis as evidence in criminal investigations of HIV transmission. HIV Med (2007) 1.38
Phylogenetic insights into regional HIV transmission. AIDS (2012) 1.18
Exploiting temporal network structures of human interaction to effectively immunize populations. PLoS One (2012) 1.13
Modelling tree shape and structure in viral phylodynamics. Philos Trans R Soc Lond B Biol Sci (2013) 1.12
Using HIV transmission networks to investigate community effects in HIV prevention trials. PLoS One (2011) 0.94
Individual and population level effects of partner notification for Chlamydia trachomatis. PLoS One (2012) 0.90
Seroconverting blood donors as a resource for characterising and optimising recent infection testing algorithms for incidence estimation. PLoS One (2011) 0.83
Connecting network properties of rapidly disseminating epizoonotics. PLoS One (2012) 0.83
Sex, drugs, and race: how behaviors differentially contribute to the sexually transmitted infection risk network structure. Am J Public Health (2012) 0.83
Response to Comment on "The Origins of Sexually Transmitted HIV Among Men Who Have Sex with Men" Sci Transl Med (2010) 0.82
Participation in research involving novel sampling and study designs to identify acute HIV-1 infection among minority men who have sex with men. AIDS Care (2013) 0.81
Evolution and spread of Venezuelan equine encephalitis complex alphavirus in the Americas. PLoS Negl Trop Dis (2017) 0.75