Published in Genome Res on June 05, 2014
Cell type-specific gene expression profiling in brain tissue: comparison between TRAP, LCM and RNA-seq. BMB Rep (2015) 0.78
Getting Down to Specifics: Profiling Gene Expression and Protein-DNA Interactions in a Cell Type-Specific Manner. Adv Genet (2015) 0.77
Ribosome-associated ncRNAs: an emerging class of translation regulators. RNA Biol (2014) 0.76
DEIVA: a web application for interactive visual analysis of differential gene expression profiles. BMC Genomics (2017) 0.75
Detection of Intracellular Gene Expression in Live Cells of Murine, Human and Porcine Origin Using Fluorescence-labeled Nanoparticles. J Vis Exp (2015) 0.75
Local translation in neuronal compartments: how local is local? EMBO Rep (2017) 0.75
Linking FANTOM5 CAGE peaks to annotations with CAGEscan. Sci Data (2017) 0.75
Transcriptomic Analysis of Ribosome-Bound mRNA in Cortical Neurites In Vivo. J Neurosci (2017) 0.75
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet (2000) 336.52
Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics (2009) 190.94
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics (2009) 67.17
Genome-wide atlas of gene expression in the adult mouse brain. Nature (2006) 28.02
Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature (2004) 24.40
Global quantification of mammalian gene expression control. Nature (2011) 22.36
Landscape of transcription in human cells. Nature (2012) 20.18
The Sequence Ontology: a tool for the unification of genome annotations. Genome Biol (2005) 18.20
Correlation between protein and mRNA abundance in yeast. Mol Cell Biol (1999) 16.95
GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists. BMC Bioinformatics (2009) 12.01
Ensembl 2013. Nucleic Acids Res (2012) 11.70
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage. Proc Natl Acad Sci U S A (2003) 8.73
A translational profiling approach for the molecular characterization of CNS cell types. Cell (2008) 8.69
REVIGO summarizes and visualizes long lists of gene ontology terms. PLoS One (2011) 8.65
FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism. Cell (2011) 8.46
Application of a translational profiling approach for the comparative analysis of CNS cell types. Cell (2008) 7.74
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation. Nucleic Acids Res (2012) 7.52
Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs. Nature (2009) 6.88
Dynamic and quantitative Ca2+ measurements using improved cameleons. Proc Natl Acad Sci U S A (1999) 6.63
Detection of functional DNA motifs via statistical over-representation. Nucleic Acids Res (2004) 6.31
mRNA localization: gene expression in the spatial dimension. Cell (2009) 5.50
AlphaVbeta5 integrin: a co-receptor for adeno-associated virus type 2 infection. Nat Med (1999) 5.26
Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat. Nature (2012) 3.08
Cell-type-specific isolation of ribosome-associated mRNA from complex tissues. Proc Natl Acad Sci U S A (2009) 2.97
The 37/67-kilodalton laminin receptor is a receptor for adeno-associated virus serotypes 8, 2, 3, and 9. J Virol (2006) 2.94
A code for transcription initiation in mammalian genomes. Genome Res (2007) 2.71
Nano-flares: probes for transfection and mRNA detection in living cells. J Am Chem Soc (2007) 2.67
Three-dimensional organization of smooth endoplasmic reticulum in hippocampal CA1 dendrites and dendritic spines of the immature and mature rat. J Neurosci (1997) 2.60
The local transcriptome in the synaptic neuropil revealed by deep sequencing and high-resolution imaging. Neuron (2012) 2.53
Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan. Nat Methods (2010) 2.30
Complex parameter landscape for a complex neuron model. PLoS Comput Biol (2006) 2.30
An active membrane model of the cerebellar Purkinje cell. I. Simulation of current clamps in slice. J Neurophysiol (1994) 2.24
Molecular profiling of activated neurons by phosphorylated ribosome capture. Cell (2012) 2.22
Dual modes of endoplasmic reticulum-to-Golgi transport in dendrites revealed by live-cell imaging. J Neurosci (2003) 2.15
Identification of process-localized mRNAs from cultured rodent hippocampal neurons. J Neurosci (2006) 2.02
On the nature and differential distribution of mRNAs in hippocampal neurites: implications for neuronal functioning. Proc Natl Acad Sci U S A (1994) 2.01
Local RNA translation at the synapse and in disease. J Neurosci (2011) 1.83
Widespread and extensive lengthening of 3' UTRs in the mammalian brain. Genome Res (2013) 1.72
FOXC1 is required for normal cerebellar development and is a major contributor to chromosome 6p25.3 Dandy-Walker malformation. Nat Genet (2009) 1.66
Dendritic mRNAs encode diversified functionalities in hippocampal pyramidal neurons. BMC Neurosci (2006) 1.66
Zfp423 is required for normal cerebellar development. Mol Cell Biol (2006) 1.62
An unbiased cDNA library prepared from isolated Aplysia sensory neuron processes is enriched for cytoskeletal and translational mRNAs. J Neurosci (2003) 1.61
Tetanic stimulation leads to increased accumulation of Ca(2+)/calmodulin-dependent protein kinase II via dendritic protein synthesis in hippocampal neurons. J Neurosci (1999) 1.60
tRNA-derived fragments target the ribosome and function as regulatory non-coding RNA in Haloferax volcanii. Archaea (2012) 1.43
Analytical approaches to RNA profiling data for the identification of genes enriched in specific cells. Nucleic Acids Res (2010) 1.41
Differential expression and dendritic transcript localization of Shank family members: identification of a dendritic targeting element in the 3' untranslated region of Shank1 mRNA. Mol Cell Neurosci (2004) 1.31
Dual roles for Pax-6: a transcriptional repressor of lens fiber cell-specific beta-crystallin genes. Mol Cell Biol (1998) 1.30
Cell type-specific transcriptomics in the brain. J Neurosci (2011) 1.28
Low-threshold potassium channels and a low-threshold calcium channel regulate Ca2+ spike firing in the dendrites of cerebellar Purkinje neurons: a modeling study. Brain Res (2001) 1.27
Induction of long-term depression in cerebellar Purkinje cells requires a rapidly turned over protein. J Neurophysiol (2001) 1.24
Stimulation of glutamate receptor protein synthesis and membrane insertion within isolated neuronal dendrites. Proc Natl Acad Sci U S A (2000) 1.23
The H19 transcript is associated with polysomes and may regulate IGF2 expression in trans. J Biol Chem (1998) 1.21
Identification of candidate Purkinje cell-specific markers by gene expression profiling in wild-type and pcd(3J) mice. Brain Res Mol Brain Res (2004) 1.20
NanoCAGE: a high-resolution technique to discover and interrogate cell transcriptomes. Cold Spring Harb Protoc (2011) 1.19
A protein synthesis-dependent late phase of cerebellar long-term depression. Neuron (1996) 1.18
Characterization of mRNA species that are associated with postsynaptic density fraction by gene chip microarray analysis. Neurosci Res (2006) 1.16
Proteomic studies of a single CNS synapse type: the parallel fiber/purkinje cell synapse. PLoS Biol (2009) 1.11
Revealing stable processing products from ribosome-associated small RNAs by deep-sequencing data analysis. Nucleic Acids Res (2012) 1.08
Suppression of artifacts and barcode bias in high-throughput transcriptome analyses utilizing template switching. Nucleic Acids Res (2012) 1.04
Cerebellar development transcriptome database (CDT-DB): profiling of spatio-temporal gene expression during the postnatal development of mouse cerebellum. Neural Netw (2008) 1.02
Control of segment-like patterns of gene expression in the mouse cerebellum. Neuron (1993) 0.99
RORalpha, a pivotal nuclear receptor for Purkinje neuron survival and differentiation: from development to ageing. Cerebellum (2006) 0.90
Entire course and distinct phases of day-lasting depression of miniature EPSC amplitudes in cultured Purkinje neurons. J Neurosci (1999) 0.89
Transcriptional activities of the Pax6 gene eyeless regulate tissue specificity of ectopic eye formation in Drosophila. Dev Biol (2009) 0.88
Comparative analyses of Purkinje cell gene expression profiles reveal shared molecular abnormalities in models of different polyglutamine diseases. Brain Res (2012) 0.87
Changing subcellular distribution and activity-dependent utilization of a dendritically localized mRNA in developing Purkinje cells. Mol Cell Neurosci (2000) 0.85
AMD, an automated motif discovery tool using stepwise refinement of gapped consensuses. PLoS One (2011) 0.82
3'UTR-dependent localization of a Purkinje cell messenger RNA in dendrites. Cerebellum (2008) 0.78
Immunohistochemical localization of alpha-mannosidase during postnatal development of the rat cerebellum. J Neurochem (1983) 0.76
The Igf2as transcript is exported into cytoplasm and associated with polysomes. Biochem Genet (2012) 0.76