Published in Chem Biol on July 17, 2014
RNA synthesis by in vitro selected ribozymes for recreating an RNA world. Life (Basel) (2015) 0.88
The queuine micronutrient: charting a course from microbe to man. Nutrients (2015) 0.86
Singlet glycine riboswitches bind ligand as well as tandem riboswitches. RNA (2016) 0.80
Structural analysis of a class III preQ1 riboswitch reveals an aptamer distant from a ribosome-binding site regulated by fast dynamics. Proc Natl Acad Sci U S A (2015) 0.80
Syntheses of (15)N-labeled pre-queuosine nucleobase derivatives. Beilstein J Org Chem (2014) 0.78
Riboswitch structure and dynamics by smFRET microscopy. Methods Enzymol (2014) 0.78
Co-evolution of Bacterial Ribosomal Protein S15 with Diverse mRNA Regulatory Structures. PLoS Genet (2015) 0.76
Conformational Rearrangements of Individual Nucleotides during RNA-Ligand Binding Are Rate-Differentiated. J Am Chem Soc (2016) 0.75
The Escherichia coli COG1738 Member YhhQ Is Involved in 7-Cyanodeazaguanine (preQ₀) Transport. Biomolecules (2017) 0.75
Characterization of engineered preQ1 riboswitches for inducible gene regulation in mycobacteria. J Bacteriol (2017) 0.75
The yjdF riboswitch candidate regulates gene expression by binding diverse azaaromatic compounds. RNA (2016) 0.75
Molecular mechanism for preQ1-II riboswitch function revealed by molecular dynamics. RNA (2015) 0.75
RNA regulators responding to ribosomal protein S15 are frequent in sequence space. Nucleic Acids Res (2016) 0.75
Riboswitch Diversity and Distribution. RNA (2017) 0.75
NCBI Reference Sequences: current status, policy and new initiatives. Nucleic Acids Res (2008) 26.04
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res (2011) 10.82
Rfam 11.0: 10 years of RNA families. Nucleic Acids Res (2012) 6.14
Relationship between internucleotide linkage geometry and the stability of RNA. RNA (1999) 5.01
Riboswitches in eubacteria sense the second messenger cyclic di-GMP. Science (2008) 4.89
Infernal 1.1: 100-fold faster RNA homology searches. Bioinformatics (2013) 4.16
Adenine riboswitches and gene activation by disruption of a transcription terminator. Nat Struct Mol Biol (2003) 3.84
The distributions, mechanisms, and structures of metabolite-binding riboswitches. Genome Biol (2007) 3.80
Improvement of reading frame maintenance is a common function for several tRNA modifications. EMBO J (2001) 3.80
Riboswitches: emerging themes in RNA structure and function. Annu Rev Biophys (2008) 3.75
A decade of riboswitches. Cell (2013) 3.26
Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes. Genome Biol (2010) 3.19
In-line probing analysis of riboswitches. Methods Mol Biol (2008) 2.76
Tandem riboswitch architectures exhibit complex gene control functions. Science (2006) 2.63
Riboswitches and the RNA world. Cold Spring Harb Perspect Biol (2012) 2.53
A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain. Nat Struct Mol Biol (2007) 2.52
Riboswitch RNAs: using RNA to sense cellular metabolism. Genes Dev (2008) 2.47
An allosteric self-splicing ribozyme triggered by a bacterial second messenger. Science (2010) 2.33
Pseudoknots: a new motif in the RNA game. Trends Biochem Sci (1990) 2.08
Biosynthesis of wybutosine, a hyper-modified nucleoside in eukaryotic phenylalanine tRNA. EMBO J (2006) 1.95
Cocrystal structure of a class I preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase. Nat Struct Mol Biol (2009) 1.88
Structural Insights into riboswitch control of the biosynthesis of queuosine, a modified nucleotide found in the anticodon of tRNA. Mol Cell (2009) 1.73
Confirmation of a second natural preQ1 aptamer class in Streptococcaceae bacteria. RNA (2008) 1.67
R2R--software to speed the depiction of aesthetic consensus RNA secondary structures. BMC Bioinformatics (2011) 1.60
Guanine riboswitch variants from Mesoplasma florum selectively recognize 2'-deoxyguanosine. Proc Natl Acad Sci U S A (2007) 1.54
Riboswitches in eubacteria sense the second messenger c-di-AMP. Nat Chem Biol (2013) 1.47
Transfer RNA modification, temperature and DNA superhelicity have a common target in the regulatory network of the virulence of Shigella flexneri: the expression of the virF gene. Mol Microbiol (2000) 1.37
Riboswitches that sense S-adenosylmethionine and S-adenosylhomocysteine. Biochem Cell Biol (2008) 1.35
Queuosine modification of the wobble base in tRNAHis influences 'in vivo' decoding properties. EMBO J (1985) 1.30
Twelve previously unknown phage genera are ubiquitous in global oceans. Proc Natl Acad Sci U S A (2013) 1.23
RNA-modifying enzymes. Curr Opin Struct Biol (2003) 1.18
Comparison of a preQ1 riboswitch aptamer in metabolite-bound and free states with implications for gene regulation. J Biol Chem (2011) 1.14
A eubacterial riboswitch class that senses the coenzyme tetrahydrofolate. Chem Biol (2010) 1.14
Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. J Mol Biol (2005) 1.14
Genome annotation and intraviral interactome for the Streptococcus pneumoniae virulent phage Dp-1. J Bacteriol (2010) 1.12
Tuning a riboswitch response through structural extension of a pseudoknot. Proc Natl Acad Sci U S A (2013) 1.09
Cooperative and directional folding of the preQ1 riboswitch aptamer domain. J Am Chem Soc (2011) 1.05
Structure of a class II preQ1 riboswitch reveals ligand recognition by a new fold. Nat Chem Biol (2013) 1.03
An embarrassment of riches: the enzymology of RNA modification. Curr Opin Chem Biol (2008) 1.00
An expanded collection and refined consensus model of glmS ribozymes. RNA (2011) 1.00
Queuosine deficiency in eukaryotes compromises tyrosine production through increased tetrahydrobiopterin oxidation. J Biol Chem (2011) 0.95
Magnesium-sensing riboswitches in bacteria. RNA Biol (2010) 0.94
Mechanism for gene control by a natural allosteric group I ribozyme. RNA (2011) 0.93
Genome sequence of a food spoilage lactic acid bacterium, Leuconostoc gasicomitatum LMG 18811T, in association with specific spoilage reactions. Appl Environ Microbiol (2011) 0.85
Atomic-scale characterization of conformational changes in the preQ₁ riboswitch aptamer upon ligand binding. J Mol Graph Model (2011) 0.84
Relationship between a tumor promoter-induced decrease in queuine modification of transfer RNA in normal human cells and the expression of an altered cell phenotype. Cancer Res (1984) 0.84
Queuosine biosynthesis is required for sinorhizobium meliloti-induced cytoskeletal modifications on HeLa Cells and symbiosis with Medicago truncatula. PLoS One (2013) 0.83
Expression of Shigella flexneri gluQ-rs gene is linked to dksA and controlled by a transcriptional terminator. BMC Microbiol (2012) 0.79
Modulation in the activity of lactate dehydrogenase and level of c-Myc and c-Fos by modified base queuine in cancer. Cancer Biol Ther (2007) 0.78