Published in Front Microbiol on August 21, 2014
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res (1997) 142.55
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol (2003) 102.57
RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res (2007) 85.81
The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res (2000) 49.22
The Pfam protein families database. Nucleic Acids Res (2000) 42.28
Circos: an information aesthetic for comparative genomics. Genome Res (2009) 40.02
Pfam: clans, web tools and services. Nucleic Acids Res (2006) 34.83
The KEGG databases at GenomeNet. Nucleic Acids Res (2002) 33.68
DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae. Nature (2000) 19.93
Fast algorithms for large-scale genome alignment and comparison. Nucleic Acids Res (2002) 17.31
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res (2004) 16.73
A combined transmembrane topology and signal peptide prediction method. J Mol Biol (2004) 15.77
Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol (2007) 14.96
Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative. Syst Biol (2006) 12.96
Cholera toxin transcriptional activator toxR is a transmembrane DNA binding protein. Cell (1987) 11.04
Genomic islands in pathogenic and environmental microorganisms. Nat Rev Microbiol (2004) 6.94
IslandViewer: an integrated interface for computational identification and visualization of genomic islands. Bioinformatics (2009) 5.69
Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server. Nucleic Acids Res (2007) 5.29
Chitin induces natural competence in Vibrio cholerae. Science (2005) 5.00
Comparative genomics: the bacterial pan-genome. Curr Opin Microbiol (2008) 4.40
Pathogenicity islands: bacterial evolution in quantum leaps. Cell (1996) 4.35
AutoFACT: an automatic functional annotation and classification tool. BMC Bioinformatics (2005) 4.26
Biodiversity of vibrios. Microbiol Mol Biol Rev (2004) 4.25
Horizontal gene transfer in bacterial and archaeal complete genomes. Genome Res (2000) 3.95
Genomic islands: tools of bacterial horizontal gene transfer and evolution. FEMS Microbiol Rev (2008) 3.80
Pathogenicity islands in bacterial pathogenesis. Clin Microbiol Rev (2004) 3.77
The Vibrio cholerae chitin utilization program. Proc Natl Acad Sci U S A (2004) 3.51
Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models. BMC Bioinformatics (2006) 3.15
Periplasmic interaction between two membrane regulatory proteins, ToxR and ToxS, results in signal transduction and transcriptional activation. Cell (1991) 3.09
Three-dimensional structure of the alkaline protease of Pseudomonas aeruginosa: a two-domain protein with a calcium binding parallel beta roll motif. EMBO J (1993) 2.80
Evaluation of genomic island predictors using a comparative genomics approach. BMC Bioinformatics (2008) 2.62
Vibrio coralliilyticus sp. nov., a temperature-dependent pathogen of the coral Pocillopora damicornis. Int J Syst Evol Microbiol (2003) 2.60
Genotypes associated with virulence in environmental isolates of Vibrio cholerae. Appl Environ Microbiol (2001) 2.41
The genome of Aeromonas salmonicida subsp. salmonicida A449: insights into the evolution of a fish pathogen. BMC Genomics (2008) 2.40
Infectious disease and environment: cholera as a paradigm for waterborne disease. Int Microbiol (2004) 2.08
The Vibrio cholerae ToxR/TcpP/ToxT virulence cascade: distinct roles for two membrane-localized transcriptional activators on a single promoter. Mol Microbiol (2000) 2.00
The Vibrio cholerae toxin-coregulated-pilus gene tcpI encodes a homolog of methyl-accepting chemotaxis proteins. Infect Immun (1994) 1.75
Horizontal gene transfer in microbial genome evolution. Theor Popul Biol (2002) 1.75
Chitin utilization by marine bacteria. Degradation and catabolism of chitin oligosaccharides by Vibrio furnissii. J Biol Chem (1991) 1.70
Vibrios as causal agents of zoonoses. Vet Microbiol (2009) 1.66
The tcp gene cluster of Vibrio cholerae. Gene (1997) 1.65
Structure and function of MARTX toxins and other large repetitive RTX proteins. Annu Rev Microbiol (2011) 1.62
GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis. Appl Environ Microbiol (2013) 1.55
Chitin utilization by marine bacteria. A physiological function for bacterial adhesion to immobilized carbohydrates. J Biol Chem (1991) 1.52
Phylogenomic analysis demonstrates a pattern of rare and ancient horizontal gene transfer between plants and fungi. Plant Cell (2009) 1.50
Horizontal gene transfer and phylogenetics. Curr Opin Microbiol (2003) 1.50
Evolutionary relationships in vibrio and Photobacterium: a basis for a natural classification. Annu Rev Microbiol (1983) 1.49
Three pathogenicity islands of Vibrio cholerae can excise from the chromosome and form circular intermediates. J Bacteriol (2007) 1.45
The Vibrio cholerae ToxR-regulated porin OmpU confers resistance to antimicrobial peptides. Infect Immun (2004) 1.40
Regulatory targets of quorum sensing in Vibrio cholerae: evidence for two distinct HapR-binding motifs. Nucleic Acids Res (2009) 1.28
Identification and characterization of a repeat-in-toxin gene cluster in Vibrio anguillarum. Infect Immun (2008) 1.22
Vibrio anguillarum as a fish pathogen: virulence factors, diagnosis and prevention. J Fish Dis (2011) 1.20
The regulatory network of natural competence and transformation of Vibrio cholerae. PLoS Genet (2012) 1.20
Pathogenic vibrios in the natural aquatic environment. Rev Environ Health (1997) 1.20
The complete genome sequence of Vibrio cholerae: a tale of two chromosomes and of two lifestyles. Genome Biol (2000) 1.20
Contribution of hemagglutinin/protease and motility to the pathogenesis of El Tor biotype cholera. Infect Immun (2006) 1.18
Chitin utilization by marine bacteria. Chemotaxis to chitin oligosaccharides by Vibrio furnissii. J Biol Chem (1991) 1.15
Role of the histone-like nucleoid structuring protein in colonization, motility, and bile-dependent repression of virulence gene expression in Vibrio cholerae. Infect Immun (2006) 1.09
Two vibrio splendidus related strains collaborate to kill Crassostrea gigas: taxonomy and host alterations. Dis Aquat Organ (2004) 1.08
The Vibrio cholerae quorum sensing response is mediated by Hfq-dependent sRNA/mRNA base pairing interactions. Mol Microbiol (2011) 1.07
The sugar-specific adhesion/deadhesion apparatus of the marine bacterium Vibrio furnissii is a sensorium that continuously monitors nutrient levels in the environment. Biochem Biophys Res Commun (1987) 1.00
Vibrio fluvialis and Vibrio furnissii isolated from a stool sample of one patient. J Clin Microbiol (1984) 0.95
Potentially pathogenic vibrios associated with mussels from a tropical region on the Atlantic coast of Brazil. J Appl Bacteriol (1994) 0.93
Identification of a chitin-induced small RNA that regulates translation of the tfoX gene, encoding a positive regulator of natural competence in Vibrio cholerae. J Bacteriol (2011) 0.93
Vibrionaceae, a versatile bacterial family with evolutionarily conserved variability. Res Microbiol (2007) 0.92
The VarS/VarA two-component system modulates the activity of the Vibrio cholerae quorum-sensing transcriptional regulator HapR. Microbiology (2011) 0.92
Complete genome sequence of a free-living Vibrio furnissii sp. nov. strain (NCTC 11218). J Bacteriol (2011) 0.89
Vibrio furnissii isolated from humans in Peru: a possible human pathogen? Epidemiol Infect (1997) 0.87
Identification of a Vibrio furnissii oligopeptide permease and characterization of its in vitro hemolytic activity. J Bacteriol (2007) 0.87
Putative virulence-related genes in Vibrio anguillarum identified by random genome sequencing. J Fish Dis (2006) 0.79