Published in Zebrafish on December 01, 2014
The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate genome. Sci Rep (2016) 0.75
Integrated gene mapping and synteny studies give insights into the evolution of a sex proto-chromosome in Solea senegalensis. Chromosoma (2016) 0.75
NIH Image to ImageJ: 25 years of image analysis. Nat Methods (2012) 84.41
Stages of embryonic development of the zebrafish. Dev Dyn (1995) 42.72
Estimate of human gene number provided by genome-wide analysis using Tetraodon nigroviridis DNA sequence. Nat Genet (2000) 14.51
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature (2004) 11.03
In vivo enhancer analysis of human conserved non-coding sequences. Nature (2006) 10.60
Highly conserved non-coding sequences are associated with vertebrate development. PLoS Biol (2004) 10.59
Kupffer's vesicle is a ciliated organ of asymmetry in the zebrafish embryo that initiates left-right development of the brain, heart and gut. Development (2005) 4.24
Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome. Nature (1993) 3.89
Stages of normal development in the medaka Oryzias latipes. Mech Dev (2004) 2.87
Highly conserved syntenic blocks at the vertebrate Hox loci and conserved regulatory elements within and outside Hox gene clusters. Proc Natl Acad Sci U S A (2006) 1.35
Generating chimeric zebrafish embryos by transplantation. J Vis Exp (2009) 1.22
Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis. Genome Res (2013) 1.20
Pigmentation pathway evolution after whole-genome duplication in fish. Genome Biol Evol (2009) 1.01
Conserved non-coding elements and cis regulation: actions speak louder than words. Development (2013) 1.00
Behavioral and chemical ecology of marine organisms with respect to tetrodotoxin. Mar Drugs (2010) 1.00
Zebrafish and medaka: model organisms for a comparative developmental approach of brain asymmetry. Philos Trans R Soc Lond B Biol Sci (2009) 0.98
Use of a novel induced spawning technique for the first reported captive spawning of Tetraodon nigroviridis. Mar Genomics (2009) 0.82
Embryogenic staging of fugu, Takifugu rubripes, and expression profiles of aldh1a2, aldh1a3 and cyp26a1. Dev Growth Differ (2011) 0.80
The expression of multiple myosin heavy chain genes during skeletal muscle development of torafugu Takifugu rubripes embryos and larvae. Gene (2012) 0.79
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature (2004) 11.03
The zebrafish reference genome sequence and its relationship to the human genome. Nature (2013) 8.52
Highly conserved non-coding elements on either side of SOX9 associated with Pierre Robin sequence. Nat Genet (2009) 3.03
Splicing segregation: the minor spliceosome acts outside the nucleus and controls cell proliferation. Cell (2007) 2.33
Gene loss and evolutionary rates following whole-genome duplication in teleost fishes. Mol Biol Evol (2006) 2.30
Prepatterning of developmental gene expression by modified histones before zygotic genome activation. Dev Cell (2011) 2.05
Mutations in VIPAR cause an arthrogryposis, renal dysfunction and cholestasis syndrome phenotype with defects in epithelial polarization. Nat Genet (2010) 2.00
Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate. Science (2010) 1.86
Automated feature detection and imaging for high-resolution screening of zebrafish embryos. Biotechniques (2011) 1.83
Hippocampal sclerosis is a progressive disorder: a longitudinal volumetric MRI study. Ann Neurol (2003) 1.66
A systematic genome-wide screen for mutations affecting organogenesis in Medaka, Oryzias latipes. Mech Dev (2004) 1.65
Genomicus: a database and a browser to study gene synteny in modern and ancestral genomes. Bioinformatics (2010) 1.63
Preventing dangerous nonsense: selection for robustness to transcriptional error in human genes. PLoS Genet (2011) 1.63
Germline mutations in DIS3L2 cause the Perlman syndrome of overgrowth and Wilms tumor susceptibility. Nat Genet (2012) 1.61
Automated high-throughput mapping of promoter-enhancer interactions in zebrafish embryos. Nat Methods (2009) 1.61
The discovery, positioning and verification of a set of transcription-associated motifs in vertebrates. Genome Biol (2005) 1.58
Individual cell migration serves as the driving force for optic vesicle evagination. Science (2006) 1.58
TBP2, a vertebrate-specific member of the TBP family, is required in embryonic development of zebrafish. Curr Biol (2004) 1.57
Genomicus: five genome browsers for comparative genomics in eukaryota. Nucleic Acids Res (2012) 1.54
Six3 inactivation reveals its essential role for the formation and patterning of the vertebrate eye. Development (2002) 1.50
Sonic hedgehog, secreted by amacrine cells, acts as a short-range signal to direct differentiation and lamination in the zebrafish retina. Development (2004) 1.43
Rx-Cre, a tool for inactivation of gene expression in the developing retina. Genesis (2006) 1.40
CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex. Nat Struct Mol Biol (2012) 1.40
MRI cytoarchitectonics: the next level? J Neurol Sci (2003) 1.40
Pearls and oy-sters: ictal syncope in a patient with temporal lobe epilepsy. Neurology (2013) 1.39
Loss-of-function mutations in RAB18 cause Warburg micro syndrome. Am J Hum Genet (2011) 1.36
A high-throughput chemically induced inflammation assay in zebrafish. BMC Biol (2010) 1.35
Six3 and Six6 activity is modulated by members of the groucho family. Development (2003) 1.30
The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafish. EMBO J (2007) 1.28
In vivo uptake and metabolism of alpha-[11C]methyl-L-tryptophan in human brain tumors. J Cereb Blood Flow Metab (2006) 1.26
Human and non-human primate genomes share hotspots of positive selection. PLoS Genet (2010) 1.24
Dynamic regulation of the transcription initiation landscape at single nucleotide resolution during vertebrate embryogenesis. Genome Res (2013) 1.20
Zebrafish embryos as models for embryotoxic and teratological effects of chemicals. Reprod Toxicol (2009) 1.20
Comparative genomic analysis reveals independent expansion of a lineage-specific gene family in vertebrates: the class II cytokine receptors and their ligands in mammals and fish. BMC Genomics (2003) 1.15
Transcriptional profiling reveals barcode-like toxicogenomic responses in the zebrafish embryo. Genome Biol (2007) 1.13
Cooperation of sonic hedgehog enhancers in midline expression. Dev Biol (2006) 1.09
Survey of protocols for the manual segmentation of the hippocampus: preparatory steps towards a joint EADC-ADNI harmonized protocol. J Alzheimers Dis (2011) 1.08
Remarkable compartmentalization of transposable elements and pseudogenes in the heterochromatin of the Tetraodon nigroviridis genome. Proc Natl Acad Sci U S A (2002) 1.07
Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA. Genome Biol (2006) 1.06
The words of the regulatory code are arranged in a variable manner in highly conserved enhancers. Dev Biol (2008) 1.02
Genomic and phenotypic characterization of a wild medaka population: towards the establishment of an isogenic population genetic resource in fish. G3 (Bethesda) (2014) 1.00
Detecting single DNA copy number variations in complex genomes using one nanogram of starting DNA and BAC-array CGH. Nucleic Acids Res (2004) 1.00
Hedgehog signaling patterns the outgrowth of unpaired skeletal appendages in zebrafish. BMC Dev Biol (2007) 0.99
Sequencing of Pax6 loci from the elephant shark reveals a family of Pax6 genes in vertebrate genomes, forged by ancient duplications and divergences. PLoS Genet (2013) 0.99
Zebrafish and medaka: model organisms for a comparative developmental approach of brain asymmetry. Philos Trans R Soc Lond B Biol Sci (2009) 0.98
The identification and functional characterisation of conserved regulatory elements in developmental genes. Brief Funct Genomic Proteomic (2005) 0.97
Two lamprey Hedgehog genes share non-coding regulatory sequences and expression patterns with gnathostome Hedgehogs. PLoS One (2010) 0.96
Nlcam modulates midline convergence during anterior neural plate morphogenesis. Dev Biol (2009) 0.94
Highly conserved elements discovered in vertebrates are present in non-syntenic loci of tunicates, act as enhancers and can be transcribed during development. Nucleic Acids Res (2013) 0.94
Transposition and targeting of the prokaryotic mobile element IS30 in zebrafish. FEBS Lett (2003) 0.91
A screen for co-factors of Six3. Mech Dev (2002) 0.91
Optimisation of embryonic and larval ECG measurement in zebrafish for quantifying the effect of QT prolonging drugs. PLoS One (2013) 0.90
The 3D organization of chromatin explains evolutionary fragile genomic regions. Cell Rep (2015) 0.89
Inventing a sex-specific gene: a conserved role of DMRT1 in teleost fishes plus a recent duplication in the medaka Oryzias latipes resulted in DMY. J Mol Evol (2003) 0.88
Paleogenomics in vertebrates, or the recovery of lost genomes from the mist of time. Bioessays (2008) 0.88
Transcriptome-wide identification of RNA binding sites by CLIP-seq. Methods (2013) 0.88
Nucleosome rotational setting is associated with transcriptional regulation in promoters of tissue-specific human genes. Genome Biol (2010) 0.87
Development of an automated imaging pipeline for the analysis of the zebrafish larval kidney. PLoS One (2013) 0.87
A floor plate enhancer of the zebrafish netrin1 gene requires Cyclops (Nodal) signalling and the winged helix transcription factor FoxA2. Dev Biol (2002) 0.86
Examples of sequence conservation analyses capture a subset of mouse long non-coding RNAs sharing homology with fish conserved genomic elements. BMC Bioinformatics (2013) 0.85
Novel SPG11 mutations in Asian kindreds and disruption of spatacsin function in the zebrafish. Neurogenetics (2010) 0.85
Targeted transgene integration overcomes variability of position effects in zebrafish. Development (2014) 0.84
How much does the amphioxus genome represent the ancestor of chordates? Brief Funct Genomics (2012) 0.84
ArhGEF18 regulates RhoA-Rock2 signaling to maintain neuro-epithelial apico-basal polarity and proliferation. Development (2013) 0.83
Mutations affecting liver development and function in Medaka, Oryzias latipes, screened by multiple criteria. Mech Dev (2004) 0.82
Differential maturation of rhythmic clock gene expression during early development in medaka (Oryzias latipes). Chronobiol Int (2014) 0.82
Functional diversification of sonic hedgehog paralog enhancers identified by phylogenomic reconstruction. Genome Biol (2007) 0.82
Minor splicing: nuclear dogma still in question. Proc Natl Acad Sci U S A (2008) 0.82
Cyclops-independent floor plate differentiation in zebrafish embryos. Dev Dyn (2003) 0.81
Developmental toxicity and estrogenic potency of zearalenone in zebrafish (Danio rerio). Aquat Toxicol (2013) 0.80
Methyl mercury suppresses the formation of the tail primordium in developing zebrafish embryos. Toxicol Sci (2010) 0.80
Paradoxical imaging findings in cerebral gliomas. J Neurol Sci (2008) 0.80
Redefining the initiation and maintenance of zebrafish interrenal steroidogenesis by characterizing the key enzyme cyp11a2. Endocrinology (2013) 0.80
Four-dimensional imaging and quantification of gene expression in early developing zebrafish (Danio rerio) embryos. Toxicol Sci (2006) 0.79
Cellular compartmentalization of phosphorylated eIF2alpha and neuronal NOS in human temporal lobe epilepsy with hippocampal sclerosis. J Neurol Sci (2003) 0.79
Synthesis of azetidines and pyrrolidines via iodocyclisation of homoallyl amines and exploration of activity in a zebrafish embryo assay. Org Biomol Chem (2013) 0.78
Four-hundred million years of conserved synteny of human Xp and Xq genes on three Tetraodon chromosomes. Genome Res (2002) 0.78
Fish as bioreactors: transgene expression of human coagulation factor VII in fish embryos. Mar Biotechnol (NY) (2004) 0.78
Intraovarian transplantation of stage I-II follicles results in viable zebrafish embryos. Int J Dev Biol (2010) 0.77
Genetic dissection of the formation of the forebrain in Medaka, Oryzias latipes. Mech Dev (2004) 0.77
Hypersalivation in temporal lobe epilepsy. Epilepsia (2006) 0.77
Heroes and villains. Br J Gen Pract (2005) 0.75
Mutations affecting somite formation in the Medaka (Oryzias latipes). Mech Dev (2004) 0.75
Fish genomics: casting the net wide. Brief Funct Genomics (2014) 0.75