Published in J Comput Chem on November 15, 2014
Parallel tempering simulations of HP-36. Proteins (2003) 1.59
Structural perturbations to population skeletons: transient dynamics, coexistence of attractors and the rarity of chaos. PLoS One (2011) 1.47
Superscaling of percolation on rectangular domains. Phys Rev Lett (2004) 1.38
Multiple stepwise refolding of immunoglobulin domain I27 upon force quench depends on initial conditions. Proc Natl Acad Sci U S A (2005) 1.32
Free energy landscape and folding mechanism of a beta-hairpin in explicit water: a replica exchange molecular dynamics study. Proteins (2005) 1.16
Factors governing fibrillogenesis of polypeptide chains revealed by lattice models. Phys Rev Lett (2010) 1.03
Effect of finite size on cooperativity and rates of protein folding. J Phys Chem A (2006) 1.03
A new analytical method for computing solvent-accessible surface area of macromolecules and its gradients. J Comput Chem (2005) 0.97
Exact solution of the Eigen model with general fitness functions and degradation rates. Proc Natl Acad Sci U S A (2006) 0.94
Refolding upon force quench and pathways of mechanical and thermal unfolding of ubiquitin. Biophys J (2006) 0.93
Eigen model as a quantum spin chain: exact dynamics. Phys Rev E Stat Nonlin Soft Matter Phys (2004) 0.92
Quasispecies theory for multiple-peak fitness landscapes. Phys Rev E Stat Nonlin Soft Matter Phys (2006) 0.91
Solvable biological evolution models with general fitness functions and multiple mutations in parallel mutation-selection scheme. Phys Rev E Stat Nonlin Soft Matter Phys (2004) 0.91
Solvable biological evolution model with a parallel mutation-selection scheme. Phys Rev E Stat Nonlin Soft Matter Phys (2004) 0.88
Folding of the protein domain hbSBD. Biophys J (2005) 0.86
Influence of noise on the synchronization of the stochastic Kuramoto model. Phys Rev E Stat Nonlin Soft Matter Phys (2007) 0.85
New force replica exchange method and protein folding pathways probed by force-clamp technique. J Chem Phys (2008) 0.83
Stochastic dynamical model for stock-stock correlations. Phys Rev E Stat Nonlin Soft Matter Phys (2004) 0.82
Phase diagram for the Eigen quasispecies theory with a truncated fitness landscape. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 0.81
RNA folding in the presence of counterions. Phys Rev E Stat Nonlin Soft Matter Phys (2007) 0.81
Synchronized state of coupled dynamics on time-varying networks. Chaos (2006) 0.80
Hydrophobic condensation and modular assembly model of protein folding. Biosystems (2008) 0.80
Evolution models with lethal mutations on symmetric or random fitness landscapes. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 0.80
Protein mechanical unfolding: Importance of non-native interactions. J Chem Phys (2009) 0.79
Dual effect of crowders on fibrillation kinetics of polypeptide chains revealed by lattice models. J Chem Phys (2013) 0.79
Unzipping of DNA with correlated base sequence. Phys Rev E Stat Nonlin Soft Matter Phys (2004) 0.78
Discovery of dihydrochalcone as potential lead for Alzheimer's disease: in silico and in vitro study. PLoS One (2013) 0.78
Stabilization and anomalous hydration of collagen fibril under heating. PLoS One (2013) 0.78
Lethal mutants and truncated selection together solve a paradox of the origin of life. PLoS One (2011) 0.78
Paths to globally generalized synchronization in scale-free networks. Phys Rev E Stat Nonlin Soft Matter Phys (2008) 0.78
Biological evolution in a multidimensional fitness landscape. Phys Rev E Stat Nonlin Soft Matter Phys (2012) 0.78
Efficient combination of Wang-Landau and transition matrix Monte Carlo methods for protein simulations. J Comput Chem (2007) 0.78
A structure-based model fails to probe the mechanical unfolding pathways of the titin I27 domain. J Chem Phys (2013) 0.78
Random sequences with power-law correlations exhibit proteinlike behavior. J Chem Phys (2007) 0.78
Temporal behavior of DNA thermal stability in the presence of platinum compounds. Role of monofunctional and bifunctional adducts. J Inorg Biochem (2012) 0.77
Enveloping triangulation method for detecting internal cavities in proteins and algorithm for computing their surface areas and volumes. J Comput Chem (2009) 0.77
Different fitnesses for in vivo and in vitro evolutions due to the finite generation-time effect. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 0.77
Diploid biological evolution models with general smooth fitness landscapes and recombination. Phys Rev E Stat Nonlin Soft Matter Phys (2008) 0.77
Empirical mode decomposition and synchrogram approach to cardiorespiratory synchronization. Phys Rev E Stat Nonlin Soft Matter Phys (2006) 0.77
Transformation between α-helix and β-sheet structures of one and two polyglutamine peptides in explicit water molecules by replica-exchange molecular dynamics simulations. J Comput Chem (2014) 0.77
Effect of Taiwan mutation (D7H) on structures of amyloid-β peptides: replica exchange molecular dynamics study. J Phys Chem B (2014) 0.77
Phase diagram and universality of the Lennard-Jones gas-liquid system. J Chem Phys (2012) 0.77
Thermal stability of DNA with interstrand crosslinks. Biopolymers (2012) 0.77
Selection via flatness as a dynamical effect in evolution models with finite population. Phys Rev E Stat Nonlin Soft Matter Phys (2010) 0.76
Wrapping conformations of a polymer on a curved surface. Phys Rev E Stat Nonlin Soft Matter Phys (2007) 0.76
Studying submicrosecond protein folding kinetics using a photolabile caging strategy and time-resolved photoacoustic calorimetry. Proteins (2010) 0.76
The role of tryptophan in staphylococcal nuclease stability. Biophys Chem (2010) 0.75
Correction: Structural Perturbations to Population Skeletons: Transient Dynamics, Coexistence of Attractors and the Rarity of Chaos. PLoS One (2016) 0.75
Thermostability of the N-terminal RNA-binding domain of the SARS-CoV nucleocapsid protein: experiments and numerical simulations. Biophys J (2009) 0.75
Oligomerization of Peptides LVEALYL and RGFFYT and Their Binding Affinity to Insulin. PLoS One (2013) 0.75
Exact finite-size corrections for the square-lattice Ising model with Brascamp-Kunz boundary conditions. Phys Rev E Stat Nonlin Soft Matter Phys (2002) 0.75
Crossover between special and ordinary transitions in random semi-infinite Ising-like systems. Phys Rev E Stat Nonlin Soft Matter Phys (2003) 0.75
Escape through an unstable limit cycle: resonant activation. Phys Rev E Stat Nonlin Soft Matter Phys (2006) 0.75
Renormalization-group approach to an Abelian sandpile model on planar lattices. Phys Rev E Stat Nonlin Soft Matter Phys (2002) 0.75
Transition from Kardar-Parisi-Zhang to tilted interface critical behavior in a solvable asymmetric avalanche model. Phys Rev Lett (2003) 0.75
Critical behavior of semi-infinite random systems at the special surface transition. Phys Rev E Stat Nonlin Soft Matter Phys (2002) 0.75
Exact amplitude ratio and finite-size corrections for the MxN square lattice Ising model. Phys Rev E Stat Nonlin Soft Matter Phys (2002) 0.75
Self-organizing behavior in a lattice model for co-evolution of virus and immune systems. Phys Rev E Stat Nonlin Soft Matter Phys (2007) 0.75
Exact multileg correlation functions for the dense phase of branching polymers in two dimensions. Phys Rev E Stat Nonlin Soft Matter Phys (2005) 0.75
Compact dimension of denatured states of staphylococcal nuclease. Proteins (2008) 0.75
How adsorption influences DNA denaturation. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 0.75
Finite-size effects for the Ising model on helical tori. Phys Rev E Stat Nonlin Soft Matter Phys (2007) 0.75
Chaotic communication via temporal transfer entropy. Phys Rev Lett (2008) 0.75
Escape through an unstable limit cycle driven by multiplicative colored non-Gaussian and additive white Gaussian noises. Phys Rev E Stat Nonlin Soft Matter Phys (2007) 0.75
Long charged macromolecule in an entropic trap with rough surfaces. Phys Rev E Stat Nonlin Soft Matter Phys (2012) 0.75
Amplitude ratios for critical systems in the c=-2 universality class. Phys Rev E Stat Nonlin Soft Matter Phys (2013) 0.75
Colored noise, folding rates and departure from Kramers' behavior. Phys Chem Chem Phys (2010) 0.75
Synchronized clusters in coupled map networks. II. Stability analysis. Phys Rev E Stat Nonlin Soft Matter Phys (2005) 0.75
Mapping functions and critical behavior of percolation on rectangular domains. Phys Rev E Stat Nonlin Soft Matter Phys (2008) 0.75
Adhesion-induced DNA naturation. Phys Rev Lett (2006) 0.75
Phase statistics approach to human ventricular fibrillation. Phys Rev E Stat Nonlin Soft Matter Phys (2009) 0.75
Synchronized clusters in coupled map networks. I. Numerical studies. Phys Rev E Stat Nonlin Soft Matter Phys (2005) 0.75
Replicators in a fine-grained environment: adaptation and polymorphism. Phys Rev Lett (2009) 0.75
Exact finite-size corrections of the free energy for the square lattice dimer model under different boundary conditions. Phys Rev E Stat Nonlin Soft Matter Phys (2003) 0.75
Universal finite-size scaling functions with exact nonuniversal metric factors. Phys Rev E Stat Nonlin Soft Matter Phys (2003) 0.75
Scaling and universality in transition to synchronous chaos with local-global interactions. Phys Rev E Stat Nonlin Soft Matter Phys (2006) 0.75
Random-cluster multihistogram sampling for the q-state Potts model. Phys Rev E Stat Nonlin Soft Matter Phys (2002) 0.75
Logarithmic conformal field theory and boundary effects in the dimer model. Phys Rev Lett (2005) 0.75
Finite-size corrections and scaling for the triangular lattice dimer model with periodic boundary conditions. Phys Rev E Stat Nonlin Soft Matter Phys (2006) 0.75