Published in BMC Genomics on October 23, 2014
The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence. Genome Biol (2016) 1.02
Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets. BMC Genomics (2016) 0.81
Analysis of Globodera rostochiensis effectors reveals conserved functions of SPRYSEC proteins in suppressing and eliciting plant immune responses. Front Plant Sci (2015) 0.78
Identification and functional analysis of secreted effectors from phytoparasitic nematodes. BMC Microbiol (2016) 0.78
Gene expression changes in diapause or quiescent potato cyst nematode, Globodera pallida, eggs after hydration or exposure to tomato root diffusate. PeerJ (2016) 0.77
The Ditylenchus destructor genome provides new insights into the evolution of plant parasitic nematodes. Proc Biol Sci (2016) 0.76
Genome wide comprehensive analysis and web resource development on cell wall degrading enzymes from phyto-parasitic nematodes. BMC Plant Biol (2015) 0.76
Analysis of the Transcriptome of the Infective Stage of the Beet Cyst Nematode, H. schachtii. PLoS One (2016) 0.75
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol (2001) 66.87
Differential expression analysis for sequence count data. Genome Biol (2010) 64.56
Improved prediction of signal peptides: SignalP 3.0. J Mol Biol (2004) 48.40
Integrative genomics viewer. Nat Biotechnol (2011) 42.83
The plant immune system. Nature (2006) 33.70
CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res (2010) 19.07
InterProScan: protein domains identifier. Nucleic Acids Res (2005) 18.82
GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends Plant Sci (2002) 16.83
Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics (2009) 16.52
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat Protoc (2013) 13.33
HMMER web server: interactive sequence similarity searching. Nucleic Acids Res (2011) 13.00
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature (2009) 6.44
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nat Biotechnol (2008) 5.19
GenomeDiagram: a python package for the visualization of large-scale genomic data. Bioinformatics (2005) 3.72
Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism. Proc Natl Acad Sci U S A (2008) 2.85
CAZymes Analysis Toolkit (CAT): web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database. Glycobiology (2010) 2.76
Alternative splicing at the intersection of biological timing, development, and stress responses. Plant Cell (2013) 2.63
Endogenous cellulases in animals: isolation of beta-1, 4-endoglucanase genes from two species of plant-parasitic cyst nematodes. Proc Natl Acad Sci U S A (1998) 2.21
Engineering broad root-knot resistance in transgenic plants by RNAi silencing of a conserved and essential root-knot nematode parasitism gene. Proc Natl Acad Sci U S A (2006) 2.18
Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. PLoS Pathog (2011) 2.09
Plant peroxisomes: biogenesis and function. Plant Cell (2012) 1.97
Top 10 plant-parasitic nematodes in molecular plant pathology. Mol Plant Pathol (2013) 1.88
A parasitism gene from a plant-parasitic nematode with function similar to CLAVATA3/ESR (CLE) of Arabidopsis thaliana. Mol Plant Pathol (2005) 1.62
Role of beta-oxidation in jasmonate biosynthesis and systemic wound signaling in tomato. Plant Cell (2005) 1.55
Cellulose binding protein from the parasitic nematode Heterodera schachtii interacts with Arabidopsis pectin methylesterase: cooperative cell wall modification during parasitism. Plant Cell (2008) 1.55
Direct identification of the Meloidogyne incognita secretome reveals proteins with host cell reprogramming potential. PLoS Pathog (2008) 1.53
Transient expression in Nicotiana benthamiana fluorescent marker lines provides enhanced definition of protein localization, movement and interactions in planta. Plant J (2009) 1.53
The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. Genome Biol (2014) 1.51
Horizontal gene transfer of microbial cellulases into nematode genomes is associated with functional assimilation and gene turnover. BMC Evol Biol (2011) 1.51
The parasitome of the phytonematode Heterodera glycines. Mol Plant Microbe Interact (2003) 1.48
Endo-beta-1,4-glucanase expression in compatible plant-nematode interactions. Plant Cell (2001) 1.39
The ternary transformation system: constitutive virG on a compatible plasmid dramatically increases Agrobacterium-mediated plant transformation. Plant Mol Biol (2000) 1.39
Arabidopsis spermidine synthase is targeted by an effector protein of the cyst nematode Heterodera schachtii. Plant Physiol (2009) 1.37
Analyses of genome architecture and gene expression reveal novel candidate virulence factors in the secretome of Phytophthora infestans. BMC Genomics (2010) 1.35
In-situ Hybridization to Messenger RNA in Heterodera glycines. J Nematol (1998) 1.33
A profile of putative parasitism genes expressed in the esophageal gland cells of the root-knot nematode Meloidogyne incognita. Mol Plant Microbe Interact (2003) 1.20
Functional roles of effectors of plant-parasitic nematodes. Gene (2011) 1.19
Horizontal gene transfer in nematodes: a catalyst for plant parasitism? Mol Plant Microbe Interact (2011) 1.18
Signal peptide-selection of cDNA cloned directly from the esophageal gland cells of the soybean cyst nematode Heterodera glycines. Mol Plant Microbe Interact (2001) 1.17
An RxLR effector from Phytophthora infestans prevents re-localisation of two plant NAC transcription factors from the endoplasmic reticulum to the nucleus. PLoS Pathog (2013) 1.15
Active uptake of cyst nematode parasitism proteins into the plant cell nucleus. Int J Parasitol (2007) 1.15
The root-knot nematode calreticulin Mi-CRT is a key effector in plant defense suppression. Mol Plant Microbe Interact (2013) 1.12
Plant catalases: peroxisomal redox guardians. Arch Biochem Biophys (2012) 1.10
An efficient cDNA-AFLP-based strategy for the identification of putative pathogenicity factors from the potato cyst nematode Globodera rostochiensis. Mol Plant Microbe Interact (2000) 1.08
Secretome Analysis of the Pine Wood Nematode Bursaphelenchus xylophilus Reveals the Tangled Roots of Parasitism and Its Potential for Molecular Mimicry. PLoS One (2013) 1.05
Identification and functional characterization of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode Globodera pallida. Mol Plant Pathol (2009) 1.04
The effector SPRYSEC-19 of Globodera rostochiensis suppresses CC-NB-LRR-mediated disease resistance in plants. Plant Physiol (2012) 1.02
The novel cyst nematode effector protein 19C07 interacts with the Arabidopsis auxin influx transporter LAX3 to control feeding site development. Plant Physiol (2010) 1.01
Plant parasitic nematode effectors target host defense and nuclear functions to establish feeding cells. Front Plant Sci (2013) 1.00
Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology. PeerJ (2013) 1.00
A root-knot nematode-secreted protein is injected into giant cells and targeted to the nuclei. New Phytol (2012) 0.98
Characterization of a chorismate mutase from the potato cyst nematode Globodera pallida. Mol Plant Pathol (2003) 0.92
Isolation of whole esophageal gland cells from plant-parasitic nematodes for transcriptome analyses and effector identification. Mol Plant Microbe Interact (2013) 0.91
Peroxisome membrane proteins: multiple trafficking routes and multiple functions? Biochem J (2013) 0.91
The N-terminal domain of PMTV TGB1 movement protein is required for nucleolar localization, microtubule association, and long-distance movement. Mol Plant Microbe Interact (2010) 0.90
Strategies for transgenic nematode control in developed and developing world crops. Curr Opin Biotechnol (2011) 0.85
Alternative splicing: a novel mechanism of regulation identified in the chorismate mutase gene of the potato cyst nematode Globodera rostochiensis. Mol Biochem Parasitol (2008) 0.85
A novel effector protein, MJ-NULG1a, targeted to giant cell nuclei plays a role in Meloidogyne javanica parasitism. Mol Plant Microbe Interact (2013) 0.83
The use of DNA microarrays for the developmental expression analysis of cDNAs from the oesophageal gland cell region of Heterodera glycines. Mol Plant Pathol (2002) 0.82
Two-dimensional data binning for the analysis of genome architecture in filamentous plant pathogens and other eukaryotes. Methods Mol Biol (2014) 0.78
Proteomic profiles of soluble proteins from the esophageal gland in female Meloidogyne incognita. Int J Parasitol (2012) 0.77
Mutational analysis of a predicted double β-propeller domain of the DspA/E effector of Erwinia amylovora. FEMS Microbiol Lett (2013) 0.77
Sequence polymorphism of 2 pioneer genes expressed in phytoparasitic nematodes showing different host ranges. J Hered (2007) 0.76
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nat Biotechnol (2008) 5.19
Is percutaneous drainage the new gold standard in the management of emphysematous pyelonephritis? Evidence from a systematic review. J Urol (2008) 3.49
Why Susie sells seashells by the seashore: implicit egotism and major life decisions. J Pers Soc Psychol (2002) 2.42
Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. PLoS Pathog (2011) 2.09
Expression of GFP-fusions in Arabidopsis companion cells reveals non-specific protein trafficking into sieve elements and identifies a novel post-phloem domain in roots. Plant J (2005) 1.83
Ingestion of double-stranded RNA by preparasitic juvenile cyst nematodes leads to RNA interference. Mol Plant Microbe Interact (2002) 1.69
Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics. Bioinformatics (2012) 1.52
The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. Genome Biol (2014) 1.51
Vector transmission regulates immune control of Plasmodium virulence. Nature (2013) 1.50
A family of glycosyl hydrolase family 45 cellulases from the pine wood nematode Bursaphelenchus xylophilus. FEBS Lett (2004) 1.47
The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery. Genome Biol (2013) 1.44
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies. J Biomed Semantics (2013) 1.44
Nucleocytoplasmic distribution is required for activation of resistance by the potato NB-LRR receptor Rx1 and is balanced by its functional domains. Plant Cell (2010) 1.39
Plant degradation: a nematode expansin acting on plants. Nature (2004) 1.37
Tomato susceptibility to root-knot nematodes requires an intact jasmonic acid signaling pathway. Mol Plant Microbe Interact (2008) 1.34
The cyst nematode SPRYSEC protein RBP-1 elicits Gpa2- and RanGAP2-dependent plant cell death. PLoS Pathog (2009) 1.29
Identification of genes involved in the response of Arabidopsis to simultaneous biotic and abiotic stresses. Plant Physiol (2013) 1.23
The TGB1 movement protein of Potato virus X reorganizes actin and endomembranes into the X-body, a viral replication factory. Plant Physiol (2012) 1.22
Functional roles of effectors of plant-parasitic nematodes. Gene (2011) 1.19
Horizontal gene transfer in nematodes: a catalyst for plant parasitism? Mol Plant Microbe Interact (2011) 1.18
Functional analysis of pathogenicity proteins of the potato cyst nematode Globodera rostochiensis using RNAi. Mol Plant Microbe Interact (2005) 1.16
Dual disease resistance mediated by the immune receptor Cf-2 in tomato requires a common virulence target of a fungus and a nematode. Proc Natl Acad Sci U S A (2012) 1.16
Parasitic nematode interactions with mammals and plants. Annu Rev Phytopathol (2003) 1.12
A secreted SPRY domain-containing protein (SPRYSEC) from the plant-parasitic nematode Globodera rostochiensis interacts with a CC-NB-LRR protein from a susceptible tomato. Mol Plant Microbe Interact (2009) 1.12
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. J Biomed Semantics (2014) 1.12
A genome-wide genetic map of NB-LRR disease resistance loci in potato. Theor Appl Genet (2011) 1.09
Cloning and characterization of pectate lyases expressed in the esophageal gland of the pine wood nematode Bursaphelenchus xylophilus. Mol Plant Microbe Interact (2006) 1.08
Nematode resistance. New Phytol (2008) 1.07
A method for double-stranded RNA-mediated transient gene silencing in Phytophthora infestans. Mol Plant Pathol (2005) 1.07
Translocation of Tomato bushy stunt virus P19 protein into the nucleus by ALY proteins compromises its silencing suppressor activity. J Virol (2006) 1.06
Expressed sequence tag (EST) analysis of the pine wood nematode Bursaphelenchus xylophilus and B. mucronatus. Mol Biochem Parasitol (2007) 1.05
Identification and functional characterization of effectors in expressed sequence tags from various life cycle stages of the potato cyst nematode Globodera pallida. Mol Plant Pathol (2009) 1.04
The effector SPRYSEC-19 of Globodera rostochiensis suppresses CC-NB-LRR-mediated disease resistance in plants. Plant Physiol (2012) 1.02
Identification of imprinted genes subject to parent-of-origin specific expression in Arabidopsis thaliana seeds. BMC Plant Biol (2011) 1.02
Molecular and biochemical characterization of an endo-beta-1,3-glucanase from the pinewood nematode Bursaphelenchus xylophilus acquired by horizontal gene transfer from bacteria. Biochem J (2005) 1.01
Role of horizontal gene transfer in the evolution of plant parasitism among nematodes. Methods Mol Biol (2009) 1.00
Efficient virus-induced gene silencing in roots using a modified tobacco rattle virus vector. Plant Physiol (2004) 1.00
Sequence and characterization of six mitochondrial subgenomes from Globodera rostochiensis: multipartite structure is conserved among close nematode relatives. J Mol Evol (2007) 0.99
The mitochondrial subgenomes of the nematode Globodera pallida are mosaics: evidence of recombination in an animal mitochondrial genome. J Mol Evol (2007) 0.98
Mining the secretome of the root-knot nematode Meloidogyne chitwoodi for candidate parasitism genes. Mol Plant Pathol (2008) 0.97
Origin, distribution and 3D-modeling of Gr-EXPB1, an expansin from the potato cyst nematode Globodera rostochiensis. FEBS Lett (2005) 0.96
Transgenic potatoes for potato cyst nematode control can replace pesticide use without impact on soil quality. PLoS One (2012) 0.96
Comparative sequence analysis of the potato cyst nematode resistance locus H1 reveals a major lack of co-linearity between three haplotypes in potato (Solanum tuberosum ssp.). Theor Appl Genet (2010) 0.94
Syncytia formed by adult female Heterodera schachtii in Arabidopsis thaliana roots have a distinct cell wall molecular architecture. New Phytol (2012) 0.93
Structural determinants at the interface of the ARC2 and leucine-rich repeat domains control the activation of the plant immune receptors Rx1 and Gpa2. Plant Physiol (2013) 0.93
A symbiont-independent endo-1,4-beta-xylanase from the plant-parasitic nematode Meloidogyne incognita. Mol Plant Microbe Interact (2006) 0.93
Analysis of expressed sequence tags and identification of genes encoding cell-wall-degrading enzymes from the fungivorous nematode Aphelenchus avenae. BMC Genomics (2009) 0.92
Localisation of Globodera pallida FMRFamide-related peptide encoding genes using in situ hybridisation. Int J Parasitol (2002) 0.90
The activation and suppression of plant innate immunity by parasitic nematodes. Annu Rev Phytopathol (2014) 0.90
Endovascular control of haemorrhagic urological emergencies: an observational study. BMC Urol (2006) 0.88
The auxin-signaling pathway is required for the lateral root response of Arabidopsis to the rhizobacterium Phyllobacterium brassicacearum. Planta (2010) 0.88
Analysis of chitin synthase function in a plant parasitic nematode, Meloidogyne artiellia, using RNAi. Gene (2005) 0.87
Structural and functional characterization of a novel, host penetration-related pectate lyase from the potato cyst nematode Globodera rostochiensis. Mol Plant Pathol (2007) 0.87
Parasitism genes and host range disparities in biotrophic nematodes: the conundrum of polyphagy versus specialisation. Bioessays (2008) 0.87
Polymer scaffolds with preferential parallel grooves enhance nerve regeneration. Tissue Eng Part A (2015) 0.86
Differential gene expression in Arabidopsis following infection by plant-parasitic nematodes Meloidogyne incognita and Heterodera schachtii. Mol Plant Pathol (2007) 0.86
Stage-specific gene expression in Teladorsagia circumcincta (Nematoda: Strongylida) infective larvae and early parasitic stages. Int J Parasitol (2007) 0.86
Functional characterisation of a cyst nematode acetylcholinesterase gene using Caenorhabditis elegans as a heterologous system. Int J Parasitol (2009) 0.86
Potato tuber pectin structure is influenced by pectin methyl esterase activity and impacts on cooked potato texture. J Exp Bot (2010) 0.86
Strategies for transgenic nematode control in developed and developing world crops. Curr Opin Biotechnol (2011) 0.85
Unusual features of pomoviral RNA movement. Front Microbiol (2011) 0.85
RNA-seq reveals the RNA binding proteins, Hfq and RsmA, play various roles in virulence, antibiotic production and genomic flux in Serratia sp. ATCC 39006. BMC Genomics (2013) 0.84
The rhoptry proteome of Eimeria tenella sporozoites. Int J Parasitol (2012) 0.83
Expression of a cystatin transgene can confer resistance to root lesion nematodes in Lilium longiflorum cv. 'Nellie White'. Transgenic Res (2014) 0.83
Paternal leakage of mitochondrial DNA in experimental crosses of populations of the potato cyst nematode Globodera pallida. Genetica (2012) 0.83
Activation of hatching in diapaused and quiescent Globodera pallida. Parasitology (2012) 0.83
Distribution and evolution of glycoside hydrolase family 45 cellulases in nematodes and fungi. BMC Evol Biol (2014) 0.83
Characterisation and functional analysis of two barley caleosins expressed during barley caryopsis development. Planta (2005) 0.82
Comparison of transcript profiles in different life stages of the nematode Globodera pallida under different host potato genotypes. Mol Plant Pathol (2012) 0.81
Raspberry leaf blotch virus, a putative new member of the genus Emaravirus, encodes a novel genomic RNA. J Gen Virol (2011) 0.81
Rather than by direct acquisition via lateral gene transfer, GHF5 cellulases were passed on from early Pratylenchidae to root-knot and cyst nematodes. BMC Evol Biol (2012) 0.81
Adipose-derived stem cells and nerve regeneration: promises and pitfalls. Int Rev Neurobiol (2013) 0.81
A molecular analysis of desiccation tolerance mechanisms in the anhydrobiotic nematode Panagrolaimus superbus using expressed sequenced tags. BMC Res Notes (2012) 0.81
Identification and characterization of the most abundant cellulases in stylet secretions from Globodera rostochiensis. Phytopathology (2009) 0.81
Segregation and recombination of a multipartite mitochondrial DNA in populations of the potato cyst nematode Globodera pallida. J Mol Evol (2007) 0.81
Finding the "dark matter" in human and yeast protein network prediction and modelling. PLoS Comput Biol (2010) 0.80
A Comparison of Three Molecular Markers for the Identification of Populations of Globodera pallida. J Nematol (2012) 0.80
Dynamic localization of two tobamovirus ORF6 proteins involves distinct organellar compartments. J Gen Virol (2012) 0.80
Adipose-derived stem cells: selecting for translational success. Regen Med (2015) 0.79
The Mi-9 gene from Solanum arcanum conferring heat-stable resistance to root-knot nematodes is a homolog of Mi-1. Plant Physiol (2006) 0.79
Image-guided biopsy-diagnosed renal cell carcinoma: critical appraisal of technique and long-term follow-up. Eur Urol (2006) 0.79
Potato virus Y HCPro localization at distinct, dynamically related and environment-influenced structures in the cell cytoplasm. Mol Plant Microbe Interact (2014) 0.79
Identification of gene expression differences between Globodera pallida and G.'mexicana' by suppression subtractive hybridization. Mol Plant Pathol (2002) 0.78
Assessing the validity of implicit egotism: a reply to Gallucci (2003). J Pers Soc Psychol (2003) 0.78
Scalable computing for evolutionary genomics. Methods Mol Biol (2012) 0.78
Assessment of protein domain fusions in human protein interaction networks prediction: application to the human kinetochore model. N Biotechnol (2010) 0.77