Published in Virology on November 21, 2014
The structure and functions of coronavirus genomic 3' and 5' ends. Virus Res (2015) 0.87
Unique and conserved features of genome and proteome of SARS-coronavirus, an early split-off from the coronavirus group 2 lineage. J Mol Biol (2003) 9.09
RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE). J Am Chem Soc (2005) 6.46
Architecture and secondary structure of an entire HIV-1 RNA genome. Nature (2009) 6.12
Accurate SHAPE-directed RNA structure determination. Proc Natl Acad Sci U S A (2008) 5.44
A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry. J Am Chem Soc (2007) 4.81
High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states. PLoS Biol (2008) 4.40
Systematic assembly of a full-length infectious cDNA of mouse hepatitis virus strain A59. J Virol (2002) 4.29
The virus-specific intracellular RNA species of two murine coronaviruses: MHV-a59 and MHV-JHM. Virology (1981) 3.57
Nidovirales: evolving the largest RNA virus genome. Virus Res (2006) 3.41
Cloning of the mouse hepatitis virus (MHV) receptor: expression in human and hamster cell lines confers susceptibility to MHV. J Virol (1991) 3.28
The molecular biology of coronaviruses. Adv Virus Res (1983) 3.14
Coronavirus genome structure and replication. Curr Top Microbiol Immunol (2005) 2.74
A contemporary view of coronavirus transcription. J Virol (2006) 2.47
SARS--beginning to understand a new virus. Nat Rev Microbiol (2003) 2.30
Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA. J Am Chem Soc (2008) 2.26
Interactions between coronavirus nucleocapsid protein and viral RNAs: implications for viral transcription. J Virol (1988) 2.00
Specific interaction between coronavirus leader RNA and nucleocapsid protein. J Virol (1988) 1.92
Analysis of cis-acting sequences essential for coronavirus defective interfering RNA replication. Virology (1993) 1.89
Deletion mapping of a mouse hepatitis virus defective interfering RNA reveals the requirement of an internal and discontiguous sequence for replication. J Virol (1993) 1.71
Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA. RNA (2009) 1.68
A cis-acting function for the coronavirus leader in defective interfering RNA replication. J Virol (1994) 1.68
Cis-acting RNA elements in human and animal plus-strand RNA viruses. Biochim Biophys Acta (2009) 1.67
Understanding the errors of SHAPE-directed RNA structure modeling. Biochemistry (2011) 1.62
Identification of putative polymerase gene product in cells infected with murine coronavirus A59. Virology (1987) 1.48
Analysis of four-way junctions in RNA structures. J Mol Biol (2009) 1.37
The UCUAAAC promoter motif is not required for high-frequency leader recombination in bovine coronavirus defective interfering RNA. J Virol (1996) 1.35
Mutagenesis of the murine hepatitis virus nsp1-coding region identifies residues important for protein processing, viral RNA synthesis, and viral replication. Virology (2005) 1.26
High affinity interaction between nucleocapsid protein and leader/intergenic sequence of mouse hepatitis virus RNA. J Gen Virol (2000) 1.24
A U-turn motif-containing stem-loop in the coronavirus 5' untranslated region plays a functional role in replication. RNA (2007) 1.21
Stem-loop III in the 5' untranslated region is a cis-acting element in bovine coronavirus defective interfering RNA replication. J Virol (2003) 1.18
Stem-loop IV in the 5' untranslated region is a cis-acting element in bovine coronavirus defective interfering RNA replication. J Virol (2005) 1.15
Replication of synthetic defective interfering RNAs derived from coronavirus mouse hepatitis virus-A59. Virology (1996) 1.12
Structure of the SARS coronavirus nucleocapsid protein RNA-binding dimerization domain suggests a mechanism for helical packaging of viral RNA. J Mol Biol (2007) 1.08
Effect of mutations in the mouse hepatitis virus 3'(+)42 protein binding element on RNA replication. J Virol (2005) 1.07
Putative cis-acting stem-loops in the 5' untranslated region of the severe acute respiratory syndrome coronavirus can substitute for their mouse hepatitis virus counterparts. J Virol (2006) 1.06
Group-specific structural features of the 5'-proximal sequences of coronavirus genomic RNAs. Virology (2010) 1.05
Biochemical and genetic analyses of murine hepatitis virus Nsp15 endoribonuclease. J Virol (2007) 1.00
Coronavirus N protein N-terminal domain (NTD) specifically binds the transcriptional regulatory sequence (TRS) and melts TRS-cTRS RNA duplexes. J Mol Biol (2009) 1.00
Structural lability in stem-loop 1 drives a 5' UTR-3' UTR interaction in coronavirus replication. J Mol Biol (2008) 1.00
Solution structure of the c-terminal dimerization domain of SARS coronavirus nucleocapsid protein solved by the SAIL-NMR method. J Mol Biol (2007) 0.97
Mouse hepatitis virus stem-loop 4 functions as a spacer element required to drive subgenomic RNA synthesis. J Virol (2011) 0.96
Bovine coronavirus nonstructural protein 1 (p28) is an RNA binding protein that binds terminal genomic cis-replication elements. J Virol (2009) 0.95
An RNA stem-loop within the bovine coronavirus nsp1 coding region is a cis-acting element in defective interfering RNA replication. J Virol (2007) 0.94
Selective 2'-hydroxyl acylation analyzed by protection from exoribonuclease (RNase-detected SHAPE) for direct analysis of covalent adducts and of nucleotide flexibility in RNA. Nat Protoc (2011) 0.93
Mouse hepatitis virus stem-loop 2 adopts a uYNMG(U)a-like tetraloop structure that is highly functionally tolerant of base substitutions. J Virol (2009) 0.91
Functional transcriptional regulatory sequence (TRS) RNA binding and helix destabilizing determinants of murine hepatitis virus (MHV) nucleocapsid (N) protein. J Biol Chem (2012) 0.87
Genetic evidence of a long-range RNA-RNA interaction between the genomic 5' untranslated region and the nonstructural protein 1 coding region in murine and bovine coronaviruses. J Virol (2012) 0.87
An optimal cis-replication stem-loop IV in the 5' untranslated region of the mouse coronavirus genome extends 16 nucleotides into open reading frame 1. J Virol (2011) 0.85
Structures of the N- and C-terminal domains of MHV-A59 nucleocapsid protein corroborate a conserved RNA-protein binding mechanism in coronavirus. Protein Cell (2010) 0.85
The solution structure of coronaviral stem-loop 2 (SL2) reveals a canonical CUYG tetraloop fold. FEBS Lett (2011) 0.83
A previously unrecognized UNR stem-loop structure in the coronavirus 5' untranslated region plays a functional role in replication. Adv Exp Med Biol (2006) 0.81
Transient oligomerization of the SARS-CoV N protein--implication for virus ribonucleoprotein packaging. PLoS One (2013) 0.80