Published in Nat Commun on December 08, 2014
Molecular dynamics simulations of large macromolecular complexes. Curr Opin Struct Biol (2015) 0.99
Cooperative folding of intrinsically disordered domains drives assembly of a strong elongated protein. Nat Commun (2015) 0.88
Cellulosomes: bacterial nanomachines for dismantling plant polysaccharides. Nat Rev Microbiol (2016) 0.79
Mechanical stability of bivalent transition metal complexes analyzed by single-molecule force spectroscopy. Beilstein J Org Chem (2015) 0.78
Combining free and aggregated cellulolytic systems in the cellulosome-producing bacterium Ruminiclostridium cellulolyticum. Biotechnol Biofuels (2015) 0.77
Functional and structural properties of a novel cellulosome-like multienzyme complex: efficient glycoside hydrolysis of water-insoluble 7-xylosyl-10-deacetylpaclitaxel. Sci Rep (2015) 0.77
QwikMD - Integrative Molecular Dynamics Toolkit for Novices and Experts. Sci Rep (2016) 0.77
Resolving dual binding conformations of cellulosome cohesin-dockerin complexes using single-molecule force spectroscopy. Elife (2015) 0.75
Complexity of the Ruminococcus flavefaciens FD-1 cellulosome reflects an expansion of family-related protein-protein interactions. Sci Rep (2017) 0.75
VMD: visual molecular dynamics. J Mol Graph (1996) 117.02
Scalable molecular dynamics with NAMD. J Comput Chem (2005) 59.49
All-atom empirical potential for molecular modeling and dynamics studies of proteins. J Phys Chem B (1998) 54.00
Protein production by auto-induction in high density shaking cultures. Protein Expr Purif (2005) 29.74
Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat Methods (2009) 22.47
Knowledge-based protein secondary structure assignment. Proteins (1995) 14.08
Biomass recalcitrance: engineering plants and enzymes for biofuels production. Science (2007) 11.75
Energy landscapes of receptor-ligand bonds explored with dynamic force spectroscopy. Nature (1999) 10.45
Ligand binding: molecular mechanics calculation of the streptavidin-biotin rupture force. Science (1996) 8.19
Molecular dynamics study of unbinding of the avidin-biotin complex. Biophys J (1997) 6.93
Mechanical unfolding intermediates in titin modules. Nature (1999) 6.12
Optimization of the additive CHARMM all-atom protein force field targeting improved sampling of the backbone φ, ψ and side-chain χ(1) and χ(2) dihedral angles. J Chem Theory Comput (2012) 5.57
Two-stage PCR protocol allowing introduction of multiple mutations, deletions and insertions using QuikChange Site-Directed Mutagenesis. Biotechniques (1999) 4.97
How strong is a covalent bond? Science (1999) 4.32
Single-molecule experiments in vitro and in silico. Science (2007) 4.22
Directed evolution of green fluorescent protein by a new versatile PCR strategy for site-directed and semi-random mutagenesis. Nucleic Acids Res (2000) 4.19
Cellulase, clostridia, and ethanol. Microbiol Mol Biol Rev (2005) 3.81
Cellulosomes: plant-cell-wall-degrading enzyme complexes. Nat Rev Microbiol (2004) 2.98
From cellulosomes to cellulosomics. Chem Rec (2008) 2.78
Degradation of cellulose substrates by cellulosome chimeras. Substrate targeting versus proximity of enzyme components. J Biol Chem (2002) 2.27
Catch-bond model derived from allostery explains force-activated bacterial adhesion. Biophys J (2005) 2.02
Cellulosome assembly revealed by the crystal structure of the cohesin-dockerin complex. Proc Natl Acad Sci U S A (2003) 1.92
Site-specific protein labeling by Sfp phosphopantetheinyl transferase. Nat Protoc (2006) 1.82
Cellulosomal scaffoldin-like proteins from Ruminococcus flavefaciens. J Bacteriol (2001) 1.56
Mechanism of bacterial cell-surface attachment revealed by the structure of cellulosomal type II cohesin-dockerin complex. Proc Natl Acad Sci U S A (2005) 1.43
The titin-telethonin complex is a directed, superstable molecular bond in the muscle Z-disk. Proc Natl Acad Sci U S A (2009) 1.40
Comparing proteins by their unfolding pattern. Biophys J (2008) 1.23
On the remarkable mechanostability of scaffoldins and the mechanical clamp motif. Proc Natl Acad Sci U S A (2009) 1.21
Abundance and diversity of dockerin-containing proteins in the fiber-degrading rumen bacterium, Ruminococcus flavefaciens FD-1. PLoS One (2010) 1.10
Thiol-based, site-specific and covalent immobilization of biomolecules for single-molecule experiments. Nat Protoc (2010) 1.10
Affinity-matured recombinant antibody fragments analyzed by single-molecule force spectroscopy. Biophys J (2007) 1.09
Highly stretched single polymers: atomic-force-microscope experiments versus ab-initio theory. Phys Rev Lett (2005) 1.08
Modeling the self-assembly of the cellulosome enzyme complex. J Biol Chem (2010) 1.05
Single-molecule dissection of the high-affinity cohesin-dockerin complex. Proc Natl Acad Sci U S A (2012) 1.04
Ultrastable combined atomic force and total internal reflection fluorescence microscope [corrected]. Rev Sci Instrum (2009) 1.01
Cellulosome gene cluster analysis for gauging the diversity of the ruminal cellulolytic bacterium Ruminococcus flavefaciens. FEMS Microbiol Lett (2008) 0.94
Fast-folding alpha-helices as reversible strain absorbers in the muscle protein myomesin. Proc Natl Acad Sci U S A (2011) 0.89
Insights into cellulosome assembly and dynamics: from dissection to reconstruction of the supramolecular enzyme complex. Curr Opin Struct Biol (2013) 0.88
Structural characterization of type II dockerin module from the cellulosome of Clostridium thermocellum: calcium-induced effects on conformation and target recognition. Biochemistry (2005) 0.87
From genes to protein mechanics on a chip. Nat Methods (2014) 0.87
Atypical cohesin-dockerin complex responsible for cell surface attachment of cellulosomal components: binding fidelity, promiscuity, and structural buttresses. J Biol Chem (2013) 0.85
Mechanical stability of multidomain proteins and novel mechanical clamps. Proteins (2011) 0.82
Structure and function of the Clostridium thermocellum cellobiohydrolase A X1-module repeat: enhancement through stabilization of the CbhA complex. Acta Crystallogr D Biol Crystallogr (2012) 0.82
Volarea - a bioinformatics tool to calculate the surface area and the volume of molecular systems. Chem Biol Drug Des (2013) 0.81
Investigating receptor-ligand systems of the cellulosome with AFM-based single-molecule force spectroscopy. J Vis Exp (2013) 0.81
Quantifying thiol-gold interactions towards the efficient strength control. Nat Commun (2014) 0.80
Single-molecule force spectroscopy on polyproteins and receptor-ligand complexes: The current toolbox. J Struct Biol (2016) 0.80
Overexpression, crystallization and preliminary X-ray characterization of Ruminococcus flavefaciens scaffoldin C cohesin in complex with a dockerin from an uncharacterized CBM-containing protein. Acta Crystallogr F Struct Biol Commun (2014) 0.78
Three cellulosomal xylanase genes in Clostridium thermocellum are regulated by both vegetative SigA (σ(A)) and alternative SigI6 (σ(I6)) factors. FEBS Lett (2015) 0.78
Enzyme- and affinity biomolecule-mediated polymerization systems for biological signal amplification and cell screening. Curr Opin Biotechnol (2016) 0.77
Revisiting the NMR solution structure of the Cel48S type-I dockerin module from Clostridium thermocellum reveals a cohesin-primed conformation. J Struct Biol (2014) 0.77
Structural characterization of a novel autonomous cohesin from Ruminococcus flavefaciens. Acta Crystallogr F Struct Biol Commun (2014) 0.75
Quantifying Synergy, Thermostability, and Targeting of Cellulolytic Enzymes and Cellulosomes with Polymerization-Based Amplification. Anal Chem (2015) 0.75