Published in Int J Wavelets Multiresolut Inf Process on July 01, 2012
A comparison of multiscale methods for the analysis of molecular dynamics simulations. J Phys Chem B (2012) 0.76
The Protein Data Bank. Nucleic Acids Res (2000) 187.10
VMD: visual molecular dynamics. J Mol Graph (1996) 117.02
Crystal structure of the site-specific recombinase gamma delta resolvase complexed with a 34 bp cleavage site. Cell (1995) 2.92
Dynameomics: a comprehensive database of protein dynamics. Structure (2010) 2.50
Methods for molecular dynamics simulations of protein folding/unfolding in solution. Methods (2004) 2.30
Wavelets in bioinformatics and computational biology: state of art and perspectives. Bioinformatics (2003) 2.16
A consensus view of fold space: combining SCOP, CATH, and the Dali Domain Dictionary. Protein Sci (2003) 1.89
Oxidation of methionine residues of proteins: biological consequences. Antioxid Redox Signal (2003) 1.88
Membrane proteins: molecular dynamics simulations. Curr Opin Struct Biol (2008) 1.86
Structure of a synaptic gammadelta resolvase tetramer covalently linked to two cleaved DNAs. Science (2005) 1.73
Dynameomics: design of a computational lab workflow and scientific data repository for protein simulations. Protein Eng Des Sel (2008) 1.54
Exploring atomic resolution physiology on a femtosecond to millisecond timescale using molecular dynamics simulations. J Gen Physiol (2010) 1.44
Dynameomics: mass annotation of protein dynamics and unfolding in water by high-throughput atomistic molecular dynamics simulations. Protein Eng Des Sel (2008) 1.43
Dynameomics: a multi-dimensional analysis-optimized database for dynamic protein data. Protein Eng Des Sel (2008) 1.36
Generation of a consensus protein domain dictionary. Bioinformatics (2010) 1.27
Three methionine residues located within the regulator of conductance for K+ (RCK) domains confer oxidative sensitivity to large-conductance Ca2+-activated K+ channels. J Physiol (2006) 1.22
Automated Event Detection and Activity Monitoring in Long Molecular Dynamics Simulations. J Chem Theory Comput (2009) 1.11
All-atom simulations of protein folding and unfolding. Adv Protein Chem (2003) 1.09
Nonlinear signal analysis methods in the elucidation of protein sequence-structure relationships. Chem Rev (2002) 0.93
Probing a structural model of the nuclear pore complex channel through molecular dynamics. Biophys J (2010) 0.87
Mode matches and their locations in the hydrophobic free energy sequences of peptide ligands and their receptor eigenfunctions. Proc Natl Acad Sci U S A (1997) 0.84
The hydrophobic cores of proteins predicted by wavelet analysis. Bioinformatics (1999) 0.83
Wavelets and molecular structure. J Comput Aided Mol Des (1996) 0.82
Single-mutation-induced stability loss in protein lysozyme. Biochem Soc Trans (2007) 0.78
A wavelet approach for the analysis of folding trajectory of protein Trp-cage. J Bioinform Comput Biol (2005) 0.77