Published in Front Microbiol on February 19, 2015
The Genome of the Toluene-Degrading Pseudomonas veronii Strain 1YdBTEX2 and Its Differential Gene Expression in Contaminated Sand. PLoS One (2016) 0.75
CRISPR System Acquisition and Evolution of an Obligate Intracellular Chlamydia-Related Bacterium. Genome Biol Evol (2016) 0.75
Phylogenetic diversity of NTT nucleotide transport proteins in free-living and parasitic bacteria and eukaryotes. Genome Biol Evol (2017) 0.75
Phage on the stage. Bacteriophage (2015) 0.75
Unexpected genomic features in widespread intracellular bacteria: evidence for motility of marine chlamydiae. ISME J (2017) 0.75
One year genome evolution of Lausannevirus in allopatric versus sympatric conditions. Genome Biol Evol (2017) 0.75
Basic local alignment search tool. J Mol Biol (1990) 659.07
Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res (2008) 151.16
Consed: a graphical tool for sequence finishing. Genome Res (1998) 59.36
De novo assembly of human genomes with massively parallel short read sequencing. Genome Res (2009) 45.91
ABySS: a parallel assembler for short read sequence data. Genome Res (2009) 43.20
KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res (1999) 40.62
Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res (2004) 28.63
Pfam: the protein families database. Nucleic Acids Res (2013) 22.48
GenDB--an open source genome annotation system for prokaryote genomes. Nucleic Acids Res (2003) 18.88
Type III protein secretion systems in bacterial pathogens of animals and plants. Microbiol Mol Biol Rev (1998) 17.27
Activities at the Universal Protein Resource (UniProt). Nucleic Acids Res (2013) 11.67
TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes. Nucleic Acids Res (2006) 8.89
The type III secretion injectisome. Nat Rev Microbiol (2006) 7.62
A broadly implementable research course in phage discovery and genomics for first-year undergraduate students. MBio (2014) 3.93
Application of 'next-generation' sequencing technologies to microbial genetics. Nat Rev Microbiol (2009) 3.30
An alternative menaquinone biosynthetic pathway operating in microorganisms. Science (2008) 2.46
Type III secretion à la Chlamydia. Trends Microbiol (2007) 2.08
Crescent bodies of Parachlamydia acanthamoeba and its life cycle within Acanthamoeba polyphaga: an electron micrograph study. Appl Environ Microbiol (2002) 1.92
The undergraduate genomics research initiative. PLoS Biol (2007) 1.76
Unity in variety--the pan-genome of the Chlamydiae. Mol Biol Evol (2011) 1.47
History of the ADP/ATP-translocase-encoding gene, a parasitism gene transferred from a Chlamydiales ancestor to plants 1 billion years ago. Appl Environ Microbiol (2003) 1.46
Rapid bacterial genome sequencing: methods and applications in clinical microbiology. Clin Microbiol Infect (2013) 1.44
Criblamydia sequanensis, a new intracellular Chlamydiales isolated from Seine river water using amoebal co-culture. Environ Microbiol (2006) 1.34
A candidate NAD+ transporter in an intracellular bacterial symbiont related to Chlamydiae. Nature (2004) 1.33
The Waddlia genome: a window into chlamydial biology. PLoS One (2010) 1.27
Tapping the nucleotide pool of the host: novel nucleotide carrier proteins of Protochlamydia amoebophila. Mol Microbiol (2006) 1.24
A genomic island present along the bacterial chromosome of the Parachlamydiaceae UWE25, an obligate amoebal endosymbiont, encodes a potentially functional F-like conjugative DNA transfer system. BMC Microbiol (2004) 1.21
Whole genome sequencing in the undergraduate classroom: outcomes and lessons from a pilot course. J Microbiol Biol Educ (2008) 1.18
Novel Chlamydiales strains isolated from a water treatment plant. Environ Microbiol (2008) 1.09
High throughput sequencing and proteomics to identify immunogenic proteins of a new pathogen: the dirty genome approach. PLoS One (2009) 1.06
Integrating metagenomic and amplicon databases to resolve the phylogenetic and ecological diversity of the Chlamydiae. ISME J (2013) 0.96
Structure and function of bacterial kid-kis and related toxin-antitoxin systems. Protein Pept Lett (2007) 0.96
Nucleotide parasitism by Simkania negevensis (Chlamydiae). J Bacteriol (2010) 0.92
Chlamydial metabolism revisited: interspecies metabolic variability and developmental stage-specific physiologic activities. FEMS Microbiol Rev (2014) 0.91
Estrella lausannensis, a new star in the Chlamydiales order. Microbes Infect (2011) 0.91
Permissivity of fish cell lines to three Chlamydia-related bacteria: Waddlia chondrophila, Estrella lausannensis and Parachlamydia acanthamoebae. FEMS Immunol Med Microbiol (2011) 0.87
Crescent and star shapes of members of the Chlamydiales order: impact of fixative methods. Antonie Van Leeuwenhoek (2013) 0.86
Microbes, metagenomes and marine mammals: enabling the next generation of scientist to enter the genomic era. BMC Genomics (2013) 0.86
Chlamydia trachomatis transports NAD via the Npt1 ATP/ADP translocase. J Bacteriol (2013) 0.84
Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds. Environ Microbiol (2014) 0.83
Antibiotic susceptibility of Estrella lausannensis, a potential emerging pathogen. Microbes Infect (2014) 0.82
Discovery of new intracellular pathogens by amoebal coculture and amoebal enrichment approaches. J Vis Exp (2013) 0.81
Criblamydia sequanensis Harbors a Megaplasmid Encoding Arsenite Resistance. Genome Announc (2014) 0.80
Discovery of catalases in members of the Chlamydiales order. J Bacteriol (2013) 0.76