Metabolic Profiling of Geobacter sulfurreducens during Industrial Bioprocess Scale-Up.

PubWeight™: 0.78‹?›

🔗 View Article (PMC 4407208)

Published in Appl Environ Microbiol on March 06, 2015

Authors

Howbeer Muhamadali1, Yun Xu1, David I Ellis1, J William Allwood1, Nicholas J W Rattray1, Elon Correa1, Haitham Alrabiah1, Jonathan R Lloyd2, Royston Goodacre3

Author Affiliations

1: School of Chemistry, Manchester Institute of Biotechnology, University of Manchester, Manchester, United Kingdom.
2: Williamson Research Centre for Molecular Environmental Science, School of Earth, Atmospheric and Environmental Sciences, University of Manchester, Manchester, United Kingdom jon.lloyd@manchester.ac.uk roy.goodacre@manchester.ac.uk.
3: School of Chemistry, Manchester Institute of Biotechnology, University of Manchester, Manchester, United Kingdom jon.lloyd@manchester.ac.uk roy.goodacre@manchester.ac.uk.

Articles cited by this

Metabolomics--the link between genotypes and phenotypes. Plant Mol Biol (2002) 11.36

Novel mode of microbial energy metabolism: organic carbon oxidation coupled to dissimilatory reduction of iron or manganese. Appl Environ Microbiol (1988) 10.87

Proposed minimum reporting standards for chemical analysis Chemical Analysis Working Group (CAWG) Metabolomics Standards Initiative (MSI). Metabolomics (2007) 6.93

Availability of ferric iron for microbial reduction in bottom sediments of the freshwater tidal potomac river. Appl Environ Microbiol (1986) 6.89

A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations. Nat Biotechnol (2001) 4.66

Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism. Appl Environ Microbiol (1994) 4.44

Dissimilatory Fe(III) and Mn(IV) reduction. Adv Microb Physiol (2004) 4.39

Procedures for large-scale metabolic profiling of serum and plasma using gas chromatography and liquid chromatography coupled to mass spectrometry. Nat Protoc (2011) 4.13

Genome of Geobacter sulfurreducens: metal reduction in subsurface environments. Science (2003) 3.68

Metabolic flux profiling of Escherichia coli mutants in central carbon metabolism using GC-MS. Eur J Biochem (2003) 3.51

Quality control for plant metabolomics: reporting MSI-compliant studies. Plant J (2008) 2.97

Global expression profiling of acetate-grown Escherichia coli. J Biol Chem (2002) 2.61

Systems level studies of mammalian metabolomes: the roles of mass spectrometry and nuclear magnetic resonance spectroscopy. Chem Soc Rev (2010) 2.50

Microbiological characterizations by FT-IR spectroscopy. Nature (1991) 2.40

Bioremediation of organic and metal contaminants with dissimilatory metal reduction. J Ind Microbiol (1995) 2.12

Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling. Appl Environ Microbiol (2006) 2.09

Microbial metabolomics: toward a platform with full metabolome coverage. Anal Biochem (2007) 1.83

Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Rep (2003) 1.76

Microbial reduction of metals and radionuclides. FEMS Microbiol Rev (2003) 1.64

Oxidation of acetate through reactions of the citric acid cycle by Geobacter sulfurreducens in pure culture and in syntrophic coculture. Arch Microbiol (2000) 1.64

The role of metabolites and metabolomics in clinically applicable biomarkers of disease. Arch Toxicol (2010) 1.58

Global metabolic profiling of Escherichia coli cultures: an evaluation of methods for quenching and extraction of intracellular metabolites. Anal Chem (2008) 1.56

Metabolic fingerprinting as a diagnostic tool. Pharmacogenomics (2007) 1.51

Magnetic particles for the separation and purification of nucleic acids. Appl Microbiol Biotechnol (2006) 1.49

In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling. Nat Rev Microbiol (2010) 1.34

Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens. PLoS Comput Biol (2008) 1.30

Geobacter sulfurreducens can grow with oxygen as a terminal electron acceptor. Appl Environ Microbiol (2004) 1.30

Development and performance of a gas chromatography-time-of-flight mass spectrometry analysis for large-scale nontargeted metabolomic studies of human serum. Anal Chem (2009) 1.28

Protein purification using magnetic adsorbent particles. Appl Microbiol Biotechnol (2006) 1.24

Elucidation of an alternate isoleucine biosynthesis pathway in Geobacter sulfurreducens. J Bacteriol (2008) 1.23

Use of canonical variates analysis in differentiation of bacteria by pyrolysis gas-liquid chromatography. J Gen Microbiol (1978) 1.22

Malate dehydrogenases--structure and function. Gen Physiol Biophys (2002) 1.21

Magnetic nanoparticles as targeted delivery systems in oncology. Radiol Oncol (2011) 1.19

Genetic characterization of a single bifunctional enzyme for fumarate reduction and succinate oxidation in Geobacter sulfurreducens and engineering of fumarate reduction in Geobacter metallireducens. J Bacteriol (2006) 1.19

Direct and Fe(II)-mediated reduction of technetium by Fe(III)-reducing bacteria. Appl Environ Microbiol (2000) 1.18

Fingerprinting food: current technologies for the detection of food adulteration and contamination. Chem Soc Rev (2012) 1.12

Rapid and quantitative detection of the microbial spoilage of meat by fourier transform infrared spectroscopy and machine learning. Appl Environ Microbiol (2002) 1.11

Microbial detoxification of metals and radionuclides. Curr Opin Biotechnol (2001) 1.10

Light scattering and light absorbance separated by extended multiplicative signal correction. application to near-infrared transmission analysis of powder mixtures. Anal Chem (2003) 1.08

Is serum or plasma more appropriate for intersubject comparisons in metabolomic studies? An assessment in patients with small-cell lung cancer. Anal Chem (2011) 1.07

Optimizing Cr(VI) and Tc(VII) remediation through nanoscale biomineral engineering. Environ Sci Technol (2010) 1.00

Control of nanoparticle size, reactivity and magnetic properties during the bioproduction of magnetite by Geobacter sulfurreducens. Nanotechnology (2011) 1.00

Metabolic fingerprints of Mycobacterium bovis cluster with molecular type: implications for genotype-phenotype links. Microbiology (2006) 0.98

Influence of missing values substitutes on multivariate analysis of metabolomics data. Metabolites (2014) 0.96

Microbial engineering of nanoheterostructures: biological synthesis of a magnetically recoverable palladium nanocatalyst. ACS Nano (2010) 0.95

Bioremediation of uranium-contaminated groundwater: a systems approach to subsurface biogeochemistry. Curr Opin Biotechnol (2012) 0.90

Metabolomics-assisted synthetic biology. Curr Opin Biotechnol (2011) 0.88

TARDIS-based microbial metabolomics: time and relative differences in systems. Trends Microbiol (2011) 0.86

FT-IR spectroscopy as a tool for rapid identification and intra-species characterization of airborne filamentous fungi. J Microbiol Methods (2005) 0.84

Phenotypic characterization of Shewanella oneidensis MR-1 under aerobic and anaerobic growth conditions by using fourier transform infrared spectroscopy and high-performance liquid chromatography analyses. Appl Environ Microbiol (2010) 0.84

High-throughput phenotyping of uropathogenic E. coli isolates with Fourier transform infrared spectroscopy. Analyst (2013) 0.83

Metabolic response of Geobacter sulfurreducens towards electron donor/acceptor variation. Microb Cell Fact (2010) 0.81

Controlled cobalt doping in biogenic magnetite nanoparticles. J R Soc Interface (2013) 0.81

Rapid reagentless quantification of alginate biosynthesis in Pseudomonas fluorescens bacteria mutants using FT-IR spectroscopy coupled to multivariate partial least squares regression. Anal Bioanal Chem (2012) 0.80

Characteristic features of Bacillus cereus cell surfaces with biosorption of Pb(II) ions by AFM and FT-IR. Colloids Surf B Biointerfaces (2006) 0.77

Fourier transform infrared spectroscopy as a metabolite fingerprinting tool for monitoring the phenotypic changes in complex bacterial communities capable of degrading phenol. Environ Microbiol (2010) 0.76