Published in Bioinformatics on March 19, 2015
The human genome browser at UCSC. Genome Res (2002) 168.23
Integrative genomics viewer. Nat Biotechnol (2011) 42.83
HTSeq--a Python framework to work with high-throughput sequencing data. Bioinformatics (2014) 23.22
CEAS: cis-regulatory element annotation system. Bioinformatics (2009) 4.26
Cistrome: an integrative platform for transcriptional regulation studies. Genome Biol (2011) 4.13
seqMINER: an integrated ChIP-seq data interpretation platform. Nucleic Acids Res (2010) 3.74
ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases. BMC Genomics (2014) 2.81
Repitools: an R package for the analysis of enrichment-based epigenomic data. Bioinformatics (2010) 1.45
Linking DNA methyltransferases to epigenetic marks and nucleosome structure genome-wide in human tumor cells. Cell Rep (2012) 1.27
Spark: a navigational paradigm for genomic data exploration. Genome Res (2012) 1.10
metaseq: a Python package for integrative genome-wide analysis reveals relationships between chromatin insulators and associated nuclear mRNA. Nucleic Acids Res (2014) 0.86
CAME: Identification of Chromatin Accessibility from Nucleosome Occupancy and Methylome Sequencing. Bioinformatics (2016) 0.75