Published in PLoS One on August 25, 2015
QIIME allows analysis of high-throughput community sequencing data. Nat Methods (2010) 85.34
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol (2006) 57.72
Search and clustering orders of magnitude faster than BLAST. Bioinformatics (2010) 51.97
UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol (2005) 49.76
UCHIME improves sensitivity and speed of chimera detection. Bioinformatics (2011) 29.22
Development of the human infant intestinal microbiota. PLoS Biol (2007) 18.91
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms. ISME J (2012) 16.84
Data, information, knowledge and principle: back to metabolism in KEGG. Nucleic Acids Res (2013) 15.13
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J (2011) 13.64
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat Biotechnol (2013) 11.05
Neonatal adaptive immunity comes of age. Nat Rev Immunol (2004) 5.31
Innate immunity of the newborn: basic mechanisms and clinical correlates. Nat Rev Immunol (2007) 5.20
Rhodococcus equi: an animal and human pathogen. Clin Microbiol Rev (1991) 5.02
Application of Sartwell's model (lognormal distribution of incubation periods) to age at onset and age at death of foals with Rhodococcus equi pneumonia as evidence of perinatal infection. J Vet Intern Med (2001) 2.13
Epidemiology of Rhodococcus equi infections: a review. Vet Microbiol (1997) 1.83
Rapid fucosylation of intestinal epithelium sustains host-commensal symbiosis in sickness. Nature (2014) 1.78
Taxonomic classification of bacterial 16S rRNA genes using short sequencing reads: evaluation of effective study designs. PLoS One (2013) 1.46
The developing intestinal microbiome and its relationship to health and disease in the neonate. J Perinatol (2011) 1.39
Sites of organic acid production and absorption in the equine gastrointestinal tract. Am J Physiol (1974) 1.39
Diagnosis, treatment, control, and prevention of infections caused by Rhodococcus equi in foals. J Vet Intern Med (2011) 1.22
Rhodococcus equi infection in foals: the science of 'rattles'. Equine Vet J (2007) 1.19
Enterocyte proliferation and apoptosis in the caudal small intestine is influenced by the composition of colonizing commensal bacteria in the neonatal gnotobiotic pig. J Anim Sci (2007) 1.09
The infant intestinal microbiome: friend or foe? Early Hum Dev (2010) 1.08
Parental dietary fat intake alters offspring microbiome and immunity. J Immunol (2013) 1.04
Taxonomic precision of different hypervariable regions of 16S rRNA gene and annotation methods for functional bacterial groups in biological wastewater treatment. PLoS One (2013) 1.04
Associations between the ecology of virulent Rhodococcus equi and the epidemiology of R. equi pneumonia on Australian thoroughbred farms. Appl Environ Microbiol (2006) 0.98
Identification of a core bacterial community within the large intestine of the horse. PLoS One (2013) 0.94
Epidemiology of Rhodococcus equi strains on Thoroughbred horse farms. Appl Environ Microbiol (2001) 0.94
Association of soil concentrations of Rhodococcus equi and incidence of pneumonia attributable to Rhodococcus equi in foals on farms in central Kentucky. Am J Vet Res (2008) 0.93
Efficacy of mass antimicrobial treatment of foals with subclinical pulmonary abscesses associated with Rhodococcus equi. J Vet Intern Med (2012) 0.92
Evaluation of fecal samples from mares as a source of Rhodococcus equi for their foals by use of quantitative bacteriologic culture and colony immunoblot analyses. Am J Vet Res (2007) 0.90
Temporal changes in cytokine expression of foals during the first month of life. Vet Immunol Immunopathol (2003) 0.89
Comparison of tulathromycin, azithromycin and azithromycin-rifampin for the treatment of mild pneumonia associated with Rhodococcus equi. Vet Rec (2013) 0.87
Comparison of concentrations of Rhodococcus equi and virulent R. equi in air of stables and paddocks on horse breeding farms in a temperate climate. Equine Vet J (2006) 0.86
Chemoprophylactic effects of azithromycin against Rhodococcus equi-induced pneumonia among foals at equine breeding farms with endemic infections. J Am Vet Med Assoc (2008) 0.86
Efficacy of gamithromycin for the treatment of foals with mild to moderate bronchopneumonia. J Vet Intern Med (2015) 0.85
Feeding and drinking behavior of mares and foals with free access to pasture and water. J Anim Sci (1985) 0.85
The development of equine immunity: Current knowledge on immunology in the young horse. Equine Vet J (2015) 0.83
Neonatal colonisation expands a specific intestinal antigen-presenting cell subset prior to CD4 T-cell expansion, without altering T-cell repertoire. PLoS One (2012) 0.83
Epidemiologic study of results of pulsed-field gel electrophoresis of isolates of Rhodococcus equi obtained from horses and horse farms. Am J Vet Res (2003) 0.82
Effects of administration of live or inactivated virulent Rhodococccus equi and age on the fecal microbiome of neonatal foals. PLoS One (2013) 0.81
Association of airborne concentration of virulent Rhodococcus equi with location (stall versus paddock) and month (January through June) on 30 horse breeding farms in central Kentucky. Am J Vet Res (2012) 0.78
Intramuscular administration of a synthetic CpG-oligodeoxynucleotide modulates functional responses of neutrophils of neonatal foals. PLoS One (2014) 0.78
Age-related changes following in vitro stimulation with Rhodococcus equi of peripheral blood leukocytes from neonatal foals. PLoS One (2013) 0.78
The effect of bacterial dose and foal age at challenge on Rhodococcus equi infection. Vet Microbiol (2013) 0.77
Association of perinatal exposure to airborne Rhodococcus equi with risk of pneumonia caused by R equi in foals. Am J Vet Res (2013) 0.77
Molecular monitoring of the bacterial community structure in foal feces pre- and post-weaning. Anaerobe (2013) 0.76