Genetics and physiology of cell wall polysaccharides in the model C4 grass, Setaria viridis spp.

PubWeight™: 0.76‹?›

🔗 View Article (PMC 4592572)

Published in BMC Plant Biol on October 02, 2015

Authors

Riksfardini A Ermawar1, Helen M Collins2, Caitlin S Byrt3, Marilyn Henderson4, Lisa A O'Donovan5, Neil J Shirley6, Julian G Schwerdt7, Jelle Lahnstein8, Geoffrey B Fincher9, Rachel A Burton10

Author Affiliations

1: Australian Research Council Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia. riksfardini.ermawar@adelaide.edu.au.
2: Australian Research Council Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia. helen.collins@adelaide.edu.au.
3: Australian Research Council Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia. caitlin.byrt@adelaide.edu.au.
4: Australian Research Council Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia. marilynhenderson1@bigpond.com.
5: Australian Research Council Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia. lisa.odonovan@adelaide.edu.au.
6: Australian Research Council Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia. neil.shirley@adelaide.edu.au.
7: Australian Research Council Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia. julian.schwerdt@adelaide.edu.au.
8: Australian Research Council Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia. jelle.lahnstein@adelaide.edu.au.
9: Australian Research Council Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia. geoffrey.fincher@adelaide.edu.au.
10: Australian Research Council Centre of Excellence in Plant Cell Walls, School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Glen Osmond, SA, 5064, Australia. rachel.burton@adelaide.edu.au.

Articles cited by this

Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol (2012) 32.00

GenBank. Nucleic Acids Res (2007) 16.92

HMMER web server: interactive sequence similarity searching. Nucleic Acids Res (2011) 13.00

Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res (2011) 11.32

PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments. Nucleic Acids Res (2006) 8.36

The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Res (2006) 8.26

The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell. Bioinformatics (2010) 6.42

Cellulosic biofuels. Annu Rev Plant Biol (2009) 4.00

The cellulose synthase superfamily. Plant Physiol (2000) 3.71

Cell-wall carbohydrates and their modification as a resource for biofuels. Plant J (2008) 3.26

Reference genome sequence of the model plant Setaria. Nat Biotechnol (2012) 3.21

Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential. Nat Biotechnol (2012) 2.82

The CesA gene family of barley. Quantitative analysis of transcripts reveals two groups of co-expressed genes. Plant Physiol (2003) 2.28

Gramene 2013: comparative plant genomics resources. Nucleic Acids Res (2013) 2.08

Bioenergy from plants and the sustainable yield challenge. New Phytol (2008) 2.03

A barley cellulose synthase-like CSLH gene mediates (1,3;1,4)-beta-D-glucan synthesis in transgenic Arabidopsis. Proc Natl Acad Sci U S A (2009) 1.97

Heterogeneity in the chemistry, structure and function of plant cell walls. Nat Chem Biol (2010) 1.85

Retracted Plant genetic engineering for biofuel production: towards affordable cellulosic ethanol. Nat Rev Genet (2008) 1.75

Setaria viridis: a model for C4 photosynthesis. Plant Cell (2010) 1.72

Setaria viridis and Setaria italica, model genetic systems for the Panicoid grasses. J Exp Bot (2011) 1.69

Cell wall architecture of the elongating maize coleoptile. Plant Physiol (2001) 1.65

Revolutionary times in our understanding of cell wall biosynthesis and remodeling in the grasses. Plant Physiol (2009) 1.63

The genetics and transcriptional profiles of the cellulose synthase-like HvCslF gene family in barley. Plant Physiol (2008) 1.58

A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica). Nat Genet (2013) 1.58

A (1-->3,1-->4)-beta-glucan-specific monoclonal antibody and its use in the quantitation and immunocytochemical location of (1-->3,1-->4)-beta-glucans. Plant J (1994) 1.51

Health benefits of finger millet (Eleusine coracana L.) polyphenols and dietary fiber: a review. J Food Sci Technol (2011) 1.40

The cellulose synthase superfamily in fully sequenced plants and algae. BMC Plant Biol (2009) 1.40

Temporal and spatial appearance of wall polysaccharides during cellularization of barley (Hordeum vulgare) endosperm. Planta (2006) 1.31

Over-expression of specific HvCslF cellulose synthase-like genes in transgenic barley increases the levels of cell wall (1,3;1,4)-β-d-glucans and alters their fine structure. Plant Biotechnol J (2011) 1.30

Expression profiling and integrative analysis of the CESA/CSL superfamily in rice. BMC Plant Biol (2010) 1.27

Down-regulation of the CSLF6 gene results in decreased (1,3;1,4)-beta-D-glucan in endosperm of wheat. Plant Physiol (2010) 1.22

Inflorescence diversification in the panicoid "bristle grass" clade (Paniceae, Poaceae): evidence from molecular phylogenies and developmental morphology. Am J Bot (2002) 1.17

Herbaceous energy crop development: recent progress and future prospects. Curr Opin Biotechnol (2008) 1.17

Loss of Cellulose synthase-like F6 function affects mixed-linkage glucan deposition, cell wall mechanical properties, and defense responses in vegetative tissues of rice. Plant Physiol (2012) 1.12

Comprehensive genome-wide survey, genomic constitution and expression profiling of the NAC transcription factor family in foxtail millet (Setaria italica L.). PLoS One (2013) 1.08

Functional characterization of barley betaglucanless mutants demonstrates a unique role for CslF6 in (1,3;1,4)-β-D-glucan biosynthesis. J Exp Bot (2011) 1.08

Cell wall and membrane-associated exo-beta-D-glucanases from developing maize seedlings. Plant Physiol (2000) 1.05

Genetic diversity and population structure of Chinese foxtail millet [Setaria italica (L.) Beauv.] landraces. G3 (Bethesda) (2012) 1.04

Current challenges in cell wall biology in the cereals and grasses. Front Plant Sci (2012) 1.01

Exploring the evolution of (1,3;1,4)-beta-D-glucans in plant cell walls: comparative genomics can help! Curr Opin Plant Biol (2009) 1.01

Comparative feedstock analysis in Setaria viridis L. as a model for C4 bioenergy grasses and Panicoid crop species. Front Plant Sci (2013) 1.01

Induction of (1-->3,1-->4)-beta-D-glucan hydrolases in leaves of dark-incubated barley seedlings. Planta (2002) 1.00

Genetic control and comparative genomic analysis of flowering time in Setaria (Poaceae). G3 (Bethesda) (2013) 0.97

C4 plants as biofuel feedstocks: optimising biomass production and feedstock quality from a lignocellulosic perspective. J Integr Plant Biol (2011) 0.97

The barley genome sequence assembly reveals three additional members of the CslF (1,3;1,4)-β-glucan synthase gene family. PLoS One (2014) 0.92

Grain development in Brachypodium and other grasses: possible interactions between cell expansion, starch deposition, and cell-wall synthesis. J Exp Bot (2013) 0.91

Are sucrose transporter expression profiles linked with patterns of biomass partitioning in Sorghum phenotypes? Front Plant Sci (2013) 0.90

Whole transcriptome analysis using next-generation sequencing of model species Setaria viridis to support C4 photosynthesis research. Plant Mol Biol (2013) 0.89

FmMDb: a versatile database of foxtail millet markers for millets and bioenergy grasses research. PLoS One (2013) 0.89

Pattern of deposition of cell wall polysaccharides and transcript abundance of related cell wall synthesis genes during differentiation in barley endosperm. Plant Physiol (2012) 0.87

Population genetics of Setaria viridis, a new model system. Mol Ecol (2014) 0.87

Setaria viridis. Methods Mol Biol (2015) 0.86

Carbohydrates--the renewable raw materials of high biotechnological value. Crit Rev Biotechnol (2003) 0.84

Microbial degradation of whole-grain complex carbohydrates and impact on short-chain fatty acids and health. Adv Nutr (2015) 0.83

Engineering temporal accumulation of a low recalcitrance polysaccharide leads to increased C6 sugar content in plant cell walls. Plant Biotechnol J (2015) 0.81

Distribution, structure and biosynthetic gene families of (1,3;1,4)-β-glucan in Sorghum bicolor. J Integr Plant Biol (2015) 0.78

Separation and purification of soluble polymers and cell wall fractions from wheat, rye and hull less barley endosperm flours for structure-nutrition studies. J Agric Food Chem (2013) 0.78

Powerful regulatory systems and post-transcriptional gene silencing resist increases in cellulose content in cell walls of barley. BMC Plant Biol (2015) 0.78

Evolutionary Dynamics of the Cellulose Synthase Gene Superfamily in Grasses. Plant Physiol (2015) 0.77

Membrane pore architecture of the CslF6 protein controls (1-3,1-4)-β-glucan structure. Sci Adv (2015) 0.77