Published in Front Plant Sci on September 22, 2015
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS One (2011) 15.19
Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach. PLoS One (2012) 5.64
A map of rice genome variation reveals the origin of cultivated rice. Nature (2012) 4.92
Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet (2010) 4.06
A reference genome for common bean and genome-wide analysis of dual domestications. Nat Genet (2014) 3.88
Epigenetic regulation of stress responses in plants. Curr Opin Plant Biol (2009) 3.46
Research on plant abiotic stress responses in the post-genome era: past, present and future. Plant J (2010) 2.94
Patterns of population epigenomic diversity. Nature (2013) 2.70
The environmental contribution to gene expression profiles. Nat Rev Genet (2008) 2.54
Genetic engineering for modern agriculture: challenges and perspectives. Annu Rev Plant Biol (2010) 2.48
Comprehensive genotyping of the USA national maize inbred seed bank. Genome Biol (2013) 2.46
Population genomic and genome-wide association studies of agroclimatic traits in sorghum. Proc Natl Acad Sci U S A (2012) 2.40
Highly sensitive and high-throughput analysis of plant hormones using MS-probe modification and liquid chromatography-tandem mass spectrometry: an application for hormone profiling in Oryza sativa. Plant Cell Physiol (2009) 1.99
A review of imaging techniques for plant phenotyping. Sensors (Basel) (2014) 1.91
Genomic analyses provide insights into the history of tomato breeding. Nat Genet (2014) 1.91
BreedVision--a multi-sensor platform for non-destructive field-based phenotyping in plant breeding. Sensors (Basel) (2013) 1.86
The transcriptional regulatory network in the drought response and its crosstalk in abiotic stress responses including drought, cold, and heat. Front Plant Sci (2014) 1.77
Deciphering and prediction of transcriptome dynamics under fluctuating field conditions. Cell (2012) 1.76
Epialleles via DNA methylation: consequences for plant evolution. Trends Ecol Evol (2004) 1.74
The plasticity of the grapevine berry transcriptome. Genome Biol (2013) 1.65
Lights, camera, action: high-throughput plant phenotyping is ready for a close-up. Curr Opin Plant Biol (2015) 1.53
Machine learning: Trends, perspectives, and prospects. Science (2015) 1.52
The 3,000 rice genomes project: new opportunities and challenges for future rice research. Gigascience (2014) 1.52
A trial of phenome analysis using 4000 Ds-insertional mutants in gene-coding regions of Arabidopsis. Plant J (2006) 1.51
Natural variations and genome-wide association studies in crop plants. Annu Rev Plant Biol (2013) 1.50
Molecular footprints of domestication and improvement in soybean revealed by whole genome re-sequencing. BMC Genomics (2013) 1.46
Field transcriptome revealed critical developmental and physiological transitions involved in the expression of growth potential in japonica rice. BMC Plant Biol (2011) 1.44
Remote, aerial phenotyping of maize traits with a mobile multi-sensor approach. Plant Methods (2015) 1.44
Discovery of genome-wide DNA polymorphisms in a landrace cultivar of Japonica rice by whole-genome sequencing. Plant Cell Physiol (2011) 1.41
Metabolome-based genome-wide association study of maize kernel leads to novel biochemical insights. Nat Commun (2014) 1.40
Robust control of the seasonal expression of the Arabidopsis FLC gene in a fluctuating environment. Proc Natl Acad Sci U S A (2010) 1.37
Genomics and bioinformatics resources for crop improvement. Plant Cell Physiol (2010) 1.33
Machine learning applications in genetics and genomics. Nat Rev Genet (2015) 1.32
Epialleles in plant evolution. Genome Biol (2012) 1.30
Advances in omics and bioinformatics tools for systems analyses of plant functions. Plant Cell Physiol (2011) 1.28
Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice. Nat Commun (2014) 1.26
Genome-wide DNA polymorphisms in elite indica rice inbreds discovered by whole-genome sequencing. Plant Biotechnol J (2012) 1.26
Integrated Analysis Platform: An Open-Source Information System for High-Throughput Plant Phenotyping. Plant Physiol (2014) 1.26
Epigenetic variation creates potential for evolution of plant phenotypic plasticity. New Phytol (2012) 1.24
Identification of loci governing eight agronomic traits using a GBS-GWAS approach and validation by QTL mapping in soya bean. Plant Biotechnol J (2014) 1.21
Molecular phylogeography of domesticated barley traces expansion of agriculture in the Old World. Genetics (2007) 1.20
Desiccation tolerance in resurrection plants: new insights from transcriptome, proteome and metabolome analysis. Front Plant Sci (2013) 1.20
ATTED-II in 2014: evaluation of gene coexpression in agriculturally important plants. Plant Cell Physiol (2013) 1.19
Acquisition of aluminium tolerance by modification of a single gene in barley. Nat Commun (2012) 1.19
Phenome analysis in plant species using loss-of-function and gain-of-function mutants. Plant Cell Physiol (2009) 1.16
Comprehensive hormone profiling in developing Arabidopsis seeds: examination of the site of ABA biosynthesis, ABA transport and hormone interactions. Plant Cell Physiol (2010) 1.15
Whole genome resequencing in tomato reveals variation associated with introgression and breeding events. BMC Genomics (2013) 1.09
Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations. Nat Genet (2014) 1.08
Integrating omic approaches for abiotic stress tolerance in soybean. Front Plant Sci (2014) 1.07
Global landscape of a co-expressed gene network in barley and its application to gene discovery in Triticeae crops. Plant Cell Physiol (2011) 1.06
Genome-wide patterns of Arabidopsis gene expression in nature. PLoS Genet (2012) 1.05
PRIMe Update: innovative content for plant metabolomics and integration of gene expression and metabolite accumulation. Plant Cell Physiol (2013) 1.02
Metabolomics platforms for genome wide association studies--linking the genome to the metabolome. Curr Opin Biotechnol (2012) 0.99
Unlocking Triticeae genomics to sustainably feed the future. Plant Cell Physiol (2013) 0.98
Genetic and epigenetic control of plant heat responses. Front Plant Sci (2015) 0.98
Plant phenomics and the need for physiological phenotyping across scales to narrow the genotype-to-phenotype knowledge gap. J Exp Bot (2015) 0.96
Metabolomics of cereals under biotic stress: current knowledge and techniques. Front Plant Sci (2013) 0.95
An epigenetic integrator: new insights into genome regulation, environmental stress responses and developmental controls by histone deacetylase 6. Plant Cell Physiol (2012) 0.95
Metabolome-genome-wide association study dissects genetic architecture for generating natural variation in rice secondary metabolism. Plant J (2014) 0.95
Recent progress in the development of metabolome databases for plant systems biology. Front Plant Sci (2013) 0.94
Plant imprinted genes identified by genome-wide approaches and their regulatory mechanisms. Plant Cell Physiol (2012) 0.94
Towards mechanistic models of plant organ growth. J Exp Bot (2012) 0.92
Correlation exploration of metabolic and genomic diversity in rice. BMC Genomics (2009) 0.92
Machine learning-based differential network analysis: a study of stress-responsive transcriptomes in Arabidopsis. Plant Cell (2014) 0.92
From models to crop species: caveats and solutions for translational metabolomics. Front Plant Sci (2011) 0.91
Epigenetic memory for stress response and adaptation in plants. Plant Cell Physiol (2014) 0.91
In silico simulation modeling reveals the importance of the Casparian strip for efficient silicon uptake in rice roots. Plant Cell Physiol (2015) 0.90
Forecasting flowering phenology under climate warming by modelling the regulatory dynamics of flowering-time genes. Nat Commun (2013) 0.88
Natural variation of barley vernalization requirements: implication of quantitative variation of winter growth habit as an adaptive trait in East Asia. Plant Cell Physiol (2011) 0.86
Memory of the vernalized state in plants including the model grass Brachypodium distachyon. Front Plant Sci (2014) 0.86
Determination of growth stages and metabolic profiles in Brachypodium distachyon for comparison of developmental context with Triticeae crops. Proc Biol Sci (2015) 0.80
3D Laser Triangulation for Plant Phenotyping in Challenging Environments. Sensors (Basel) (2015) 0.80
Computational approaches for prediction of pathogen-host protein-protein interactions. Front Microbiol (2015) 0.80
Punctual transcriptional regulation by the rice circadian clock under fluctuating field conditions. Plant Cell (2015) 0.80
Nitrogen as a key regulator of flowering in Fagus crenata: understanding the physiological mechanism of masting by gene expression analysis. Ecol Lett (2014) 0.79
SS-mPMG and SS-GA: tools for finding pathways and dynamic simulation of metabolic networks. Plant Cell Physiol (2013) 0.78
Understanding circadian regulation of carbohydrate metabolism in Arabidopsis using mathematical models. Plant Cell Physiol (2015) 0.78
A mathematical model of phloem sucrose transport as a new tool for designing rice panicle structure for high grain yield. Plant Cell Physiol (2014) 0.76
High-throughput phenotyping of plant populations using a personal digital assistant. Methods Mol Biol (2012) 0.76