Transcriptome analysis of Ginkgo biloba kernels.

PubWeight™: 0.83‹?›

🔗 View Article (PMC 4593864)

Published in Front Plant Sci on October 06, 2015

Authors

Bing He1, Yincong Gu1, Meng Xu1, Jianwen Wang1, Fuliang Cao1, Li-An Xu1

Author Affiliations

1: Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University Nanjing, China.

Articles cited by this

Statistical significance for genomewide studies. Proc Natl Acad Sci U S A (2003) 88.64

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol (2010) 75.21

Next-generation DNA sequencing methods. Annu Rev Genomics Hum Genet (2008) 68.81

Differential expression analysis for sequence count data. Genome Biol (2010) 64.56

Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol (2011) 53.86

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics (2011) 25.76

High-throughput functional annotation and data mining with the Blast2GO suite. Nucleic Acids Res (2008) 13.51

Gene ontology analysis for RNA-seq: accounting for selection bias. Genome Biol (2010) 9.15

Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary. Bioinformatics (2005) 4.60

The discovery of a mevalonate-independent pathway for isoprenoid biosynthesis in bacteria, algae and higher plants. Nat Prod Rep (1999) 4.47

A 1-deoxy-D-xylulose 5-phosphate reductoisomerase catalyzing the formation of 2-C-methyl-D-erythritol 4-phosphate in an alternative nonmevalonate pathway for terpenoid biosynthesis. Proc Natl Acad Sci U S A (1998) 3.86

Studies on the nonmevalonate terpene biosynthetic pathway: metabolic role of IspH (LytB) protein. Proc Natl Acad Sci U S A (2002) 2.14

The efficacy of Ginkgo biloba on cognitive function in Alzheimer disease. Arch Neurol (1998) 1.77

The missing link in Ginkgo evolution. Nature (2003) 1.61

Reduction of atherosclerotic nanoplaque formation and size by Ginkgo biloba (EGb 761) in cardiovascular high-risk patients. Atherosclerosis (2007) 1.53

Genotyping-by-sequencing (GBS): a novel, efficient and cost-effective genotyping method for cattle using next-generation sequencing. PLoS One (2013) 1.41

Phylogeography of a living fossil: pleistocene glaciations forced Ginkgo biloba L. (Ginkgoaceae) into two refuge areas in China with limited subsequent postglacial expansion. Mol Phylogenet Evol (2008) 1.23

Ginkgolides and bilobalide: their physical, chromatographic and spectroscopic properties. Bioorg Med Chem (2005) 1.15

Arabidopsis thaliana contains two differentially expressed farnesyl-diphosphate synthase genes. J Biol Chem (1996) 1.11

The complete chloroplast genome of Ginkgo biloba reveals the mechanism of inverted repeat contraction. Genome Biol Evol (2012) 1.10

Chloroplast phylogenomics indicates that Ginkgo biloba is sister to cycads. Genome Biol Evol (2013) 0.94

Functional genomics of a living fossil tree, Ginkgo, based on next-generation sequencing technology. Physiol Plant (2011) 0.91

The ginkgolides. Pure Appl Chem (1967) 0.90

Cloning and characterization of a root-specific expressing gene encoding 3-hydroxy-3-methylglutaryl coenzyme A reductase from Ginkgo biloba. Mol Biol Rep (2006) 0.88

Cloning and functional characterization of 2-C-methyl-D-erythritol 4-phosphate cytidyltransferase (GbMECT) gene from Ginkgo biloba. Phytochemistry (2006) 0.85

Identification of class 2 1-deoxy-D-xylulose 5-phosphate synthase and 1-deoxy-D-xylulose 5-phosphate reductoisomerase genes from Ginkgo biloba and their transcription in embryo culture with respect to ginkgolide biosynthesis. Planta Med (2006) 0.85

Effects of Ginkgo biloba extract on the proliferation of vascular smooth muscle cells in vitro and on intimal thickening and interleukin-1beta expression after balloon injury in cholesterol-fed rabbits in vivo. J Cell Biochem (2002) 0.84

Effects of Ginkgo biloba extract (EGb 761) on cerebral thrombosis and blood pressure in stroke-prone spontaneously hypertensive rats. Clin Exp Pharmacol Physiol (2002) 0.84

Molecular cloning, characterization and functional analysis of a 2C-methyl- D-erythritol 2, 4-cyclodiphosphate synthase gene from ginkgo biloba. J Biochem Mol Biol (2006) 0.83

Pharmaceutical quality of different Ginkgo biloba brands. J Pharm Pharmacol (2002) 0.82

Developmental pattern of Ginkgo biloba levopimaradiene synthase (GbLPS) as probed by promoter analysis in Arabidopsis thaliana. Plant Cell Rep (2012) 0.81

Identification of a novel abscisic acid-regulated farnesol dehydrogenase from Arabidopsis. Plant Physiol (2010) 0.79

Standardized extracts of flavonoids increase the viability of PC12 cells treated with hydrogen peroxide: effects on oxidative injury. Arch Toxicol (2002) 0.78

Garlic burn in a patient with trigeminal neuralgia: a case report. Eur J Dent (2010) 0.78