Published in New Phytol on November 02, 2015
Concurrent Drought Stress and Vascular Pathogen Infection Induce Common and Distinct Transcriptomic Responses in Chickpea. Front Plant Sci (2017) 0.75
Breeding approaches and genomics technologies to increase crop yield under low-temperature stress. Plant Cell Rep (2016) 0.75
Stress-responsive gene RsICE1 from Raphanus sativus increases cold tolerance in rice. Protoplasma (2016) 0.75
Bioconductor: open software development for computational biology and bioinformatics. Genome Biol (2004) 143.19
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature (2006) 24.29
Open source clustering software. Bioinformatics (2004) 23.17
Reactive oxygen species: metabolism, oxidative stress, and signal transduction. Annu Rev Plant Biol (2004) 18.76
Oxidative stress, antioxidants and stress tolerance. Trends Plant Sci (2002) 13.67
PLANT COLD ACCLIMATION: Freezing Tolerance Genes and Regulatory Mechanisms. Annu Rev Plant Physiol Plant Mol Biol (1999) 11.32
Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit. Proc Natl Acad Sci U S A (1997) 8.49
Transcriptional regulatory networks in cellular responses and tolerance to dehydration and cold stresses. Annu Rev Plant Biol (2006) 8.44
Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance. Science (1998) 8.18
GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis. Nucleic Acids Res (2008) 6.91
Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. Plant Cell (2002) 6.03
Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression. Plant J (1998) 5.70
Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress. Plant Physiol (2002) 5.43
ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis. Genes Dev (2003) 4.99
Recruitment of RNA polymerase III to its target promoters. Genes Dev (2002) 4.36
Defining mechanisms that regulate RNA polymerase II transcription in vivo. Nature (2009) 4.31
Cracking the RNA polymerase II CTD code. Trends Genet (2008) 4.00
Life on a planet of its own: regulation of RNA polymerase I transcription in the nucleolus. Genes Dev (2003) 3.85
Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature transcriptome of Arabidopsis. Plant J (2005) 3.63
Epigenetic regulation of stress responses in plants. Curr Opin Plant Biol (2009) 3.46
Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems. Plant J (2004) 3.31
The Arabidopsis cold-responsive transcriptome and its regulation by ICE1. Plant Cell (2005) 2.76
affylmGUI: a graphical user interface for linear modeling of single channel microarray data. Bioinformatics (2006) 2.74
Cold Acclimation of Arabidopsis thaliana (Effect on Plasma Membrane Lipid Composition and Freeze-Induced Lesions). Plant Physiol (1995) 2.70
The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression Is regulated by low temperature but not by abscisic acid or dehydration. Plant Physiol (1999) 2.70
Arabidopsis transcriptional activators CBF1, CBF2, and CBF3 have matching functional activities. Plant Mol Biol (2004) 2.56
Chromatin techniques for plant cells. Plant J (2004) 2.50
HOS1, a genetic locus involved in cold-responsive gene expression in arabidopsis. Plant Cell (1998) 2.47
Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II. Mol Cell (2008) 2.43
Low temperature induction of Arabidopsis CBF1, 2, and 3 is gated by the circadian clock. Plant Physiol (2005) 2.39
A global survey of gene regulation during cold acclimation in Arabidopsis thaliana. PLoS Genet (2005) 2.32
Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. Plant Cell (2009) 2.30
The RNA polymerase II machinery: structure illuminates function. Cell (2002) 2.24
Roles of RNA polymerase IV in gene silencing. Trends Plant Sci (2008) 2.00
Transcriptional adaptor and histone acetyltransferase proteins in Arabidopsis and their interactions with CBF1, a transcriptional activator involved in cold-regulated gene expression. Nucleic Acids Res (2001) 1.96
Iwr1 directs RNA polymerase II nuclear import. Mol Cell (2011) 1.88
A Saccharomyces cerevisiae genome-wide mutant screen for altered sensitivity to K1 killer toxin. Genetics (2003) 1.76
SHH1, a homeodomain protein required for DNA methylation, as well as RDR2, RDM4, and chromatin remodeling factors, associate with RNA polymerase IV. PLoS Genet (2011) 1.61
A putative Arabidopsis nucleoporin, AtNUP160, is critical for RNA export and required for plant tolerance to cold stress. Mol Cell Biol (2006) 1.52
Disruption of the Arabidopsis circadian clock is responsible for extensive variation in the cold-responsive transcriptome. Plant Physiol (2008) 1.47
Circadian clock-associated 1 and late elongated hypocotyl regulate expression of the C-repeat binding factor (CBF) pathway in Arabidopsis. Proc Natl Acad Sci U S A (2011) 1.47
A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development. Genes Dev (2009) 1.45
Involvement of Arabidopsis histone deacetylase HDA6 in ABA and salt stress response. J Exp Bot (2010) 1.42
The phytochrome-interacting factor PIF7 negatively regulates DREB1 expression under circadian control in Arabidopsis. Plant Physiol (2009) 1.37
The plant genome's methylation status and response to stress: implications for plant improvement. Curr Opin Plant Biol (2007) 1.33
RNA-directed DNA methylation and plant development require an IWR1-type transcription factor. EMBO Rep (2009) 1.32
A genome-wide screen in Saccharomyces cerevisiae reveals altered transport as a mechanism of resistance to the anticancer drug bleomycin. Cancer Res (2004) 1.23
DNA demethylases target promoter transposable elements to positively regulate stress responsive genes in Arabidopsis. Genome Biol (2014) 1.03
Trichostatin A selectively suppresses the cold-induced transcription of the ZmDREB1 gene in maize. PLoS One (2011) 0.99
Disruption of Arabidopsis CHY1 reveals an important role of metabolic status in plant cold stress signaling. Mol Plant (2009) 0.98
The RdDM pathway is required for basal heat tolerance in Arabidopsis. Mol Plant (2013) 0.94
Transcriptomic and physiological variations of three Arabidopsis ecotypes in response to salt stress. PLoS One (2013) 0.92
The yeast RNA polymerase II-associated factor Iwr1p is involved in the basal and regulated transcription of specific genes. J Biol Chem (2009) 0.89
Cold stress selectively unsilences tandem repeats in heterochromatin associated with accumulation of H3K9ac. Plant Cell Environ (2012) 0.88
AtHAP5A modulates freezing stress resistance in Arabidopsis through binding to CCAAT motif of AtXTH21. New Phytol (2014) 0.88
Differential acetylation of histone H3 at the regulatory region of OsDREB1b promoter facilitates chromatin remodelling and transcription activation during cold stress. PLoS One (2014) 0.86
Iwr1 protein is important for preinitiation complex formation by all three nuclear RNA polymerases in Saccharomyces cerevisiae. PLoS One (2011) 0.84
Comparison of salt stress resistance genes in transgenic Arabidopsis thaliana indicates that extent of transcriptomic change may not predict secondary phenotypic or fitness effects. Plant Biotechnol J (2011) 0.83
DDM1 and ROS1 have a role in UV-B induced- and oxidative DNA damage in A. thaliana. Front Plant Sci (2013) 0.83
Over-expression of the Arabidopsis CBF1 gene improves resistance of tomato leaves to low temperature under low irradiance. Plant Biol (Stuttg) (2011) 0.81
Overexpression of Arabidopsis CBF1 gene in transgenic tobacco alleviates photoinhibition of PSII and PSI during chilling stress under low irradiance. J Plant Physiol (2010) 0.77