Published in PLoS Negl Trop Dis on January 05, 2016
Basic local alignment search tool. J Mol Biol (1990) 659.07
MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res (2004) 168.89
The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res (1987) 26.51
Primer3--new capabilities and interfaces. Nucleic Acids Res (2012) 20.34
The genome of the African trypanosome Trypanosoma brucei. Science (2005) 11.48
Enhancements and modifications of primer design program Primer3. Bioinformatics (2007) 10.15
Twilight zone of protein sequence alignments. Protein Eng (1999) 9.83
The genome of the kinetoplastid parasite, Leishmania major. Science (2005) 8.64
Amelioration of bacterial genomes: rates of change and exchange. J Mol Evol (1997) 8.53
Horizontal gene transfer among genomes: the complexity hypothesis. Proc Natl Acad Sci U S A (1999) 7.65
Molecular archaeology of the Escherichia coli genome. Proc Natl Acad Sci U S A (1998) 7.40
You are what you eat: a gene transfer ratchet could account for bacterial genes in eukaryotic nuclear genomes. Trends Genet (1998) 6.64
Horizontal gene transfer in eukaryotic evolution. Nat Rev Genet (2008) 6.21
Horizontal gene transfer, genome innovation and evolution. Nat Rev Microbiol (2005) 5.21
Comparative genomic analysis of three Leishmania species that cause diverse human disease. Nat Genet (2007) 4.58
Control of the leishmaniases. World Health Organ Tech Rep Ser (2010) 4.38
KaKs_Calculator: calculating Ka and Ks through model selection and model averaging. Genomics Proteomics Bioinformatics (2006) 4.15
TriTrypDB: a functional genomic resource for the Trypanosomatidae. Nucleic Acids Res (2009) 3.79
Origins, evolution, and phenotypic impact of new genes. Genome Res (2010) 2.98
On surrogate methods for detecting lateral gene transfer. FEMS Microbiol Lett (2001) 2.80
The Trypanosoma cruzi proteome. Science (2005) 2.63
Transmission of Leishmania metacyclic promastigotes by phlebotomine sand flies. Int J Parasitol (2007) 2.23
Codon bias and base composition are poor indicators of horizontally transferred genes. Mol Biol Evol (2001) 1.91
Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania. Genome Res (2011) 1.90
The evolution and diversity of kinetoplastid flagellates. Trends Parasitol (2006) 1.79
CAIcal: a combined set of tools to assess codon usage adaptation. Biol Direct (2008) 1.77
Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling. Genome Biol (2013) 1.62
Phylogeny of Leishmania species based on the heat-shock protein 70 gene. Infect Genet Evol (2009) 1.59
Gene transfer and diversification of microbial eukaryotes. Annu Rev Microbiol (2009) 1.58
Genomic and proteomic expression analysis of Leishmania promastigote and amastigote life stages: the Leishmania genome is constitutively expressed. Mol Biochem Parasitol (2006) 1.57
Living in a phagolysosome; metabolism of Leishmania amastigotes. Trends Parasitol (2007) 1.49
Metabolism of Leishmania: proven and predicted. Trends Parasitol (2007) 1.44
Evolution of the genus Leishmania revealed by comparison of DNA and RNA polymerase gene sequences. Mol Biochem Parasitol (1997) 1.43
Lateral gene transfer. Curr Biol (2011) 1.43
Functional and ecological impacts of horizontal gene transfer in eukaryotes. Curr Opin Genet Dev (2009) 1.42
Computing Ka and Ks with a consideration of unequal transitional substitutions. BMC Evol Biol (2006) 1.42
Lateral gene transfer and metabolic adaptation in the human parasite Trichomonas vaginalis. Mol Biol Evol (2000) 1.37
Duplication is more common among laterally transferred genes than among indigenous genes. Genome Biol (2003) 1.34
Leishmania major chromosome 3 contains two long convergent polycistronic gene clusters separated by a tRNA gene. Nucleic Acids Res (2003) 1.29
Genome sequencing of the lizard parasite Leishmania tarentolae reveals loss of genes associated to the intracellular stage of human pathogenic species. Nucleic Acids Res (2011) 1.23
A fast method for approximating maximum likelihoods of phylogenetic trees from nucleotide sequences. Syst Biol (1998) 1.23
Codon usage suggests that translational selection has a major impact on protein expression in trypanosomatids. BMC Genomics (2008) 1.22
Patterns of bacterial gene movement. Mol Biol Evol (2004) 1.20
The role of laterally transferred genes in adaptive evolution. BMC Evol Biol (2007) 1.18
Patterns of prokaryotic lateral gene transfers affecting parasitic microbial eukaryotes. Genome Biol (2013) 1.17
Internal-transcribed-spacer (ITS) sequences used to explore phylogenetic relationships within Leishmania. Ann Trop Med Parasitol (2000) 1.13
Evaluation of 7SL RNA gene sequences for the identification of Leishmania spp. Am J Trop Med Hyg (2005) 1.10
Sequence variation of the cytochrome b gene of various human infecting members of the genus Leishmania and their phylogeny. Parasitology (2004) 1.01
The transferome of metabolic genes explored: analysis of the horizontal transfer of enzyme encoding genes in unicellular eukaryotes. Genome Biol (2009) 1.00
Endosymbiosis in trypanosomatids: the genomic cooperation between bacterium and host in the synthesis of essential amino acids is heavily influenced by multiple horizontal gene transfers. BMC Evol Biol (2013) 0.98
The more insect trypanosomatids under study-the more diverse Trypanosomatidae appears. Int J Parasitol (2001) 0.95
Horizontal gene transfer in trypanosomatids. Trends Parasitol (2007) 0.92
Evolution of codon usage and base contents in kinetoplastid protozoans. Mol Biol Evol (1994) 0.90
Adaptive Horizontal Gene Transfers between Multiple Cheese-Associated Fungi. Curr Biol (2015) 0.87
A recently transferred cluster of bacterial genes in Trichomonas vaginalis--lateral gene transfer and the fate of acquired genes. BMC Evol Biol (2014) 0.86
Growth at acidic pH induces an amastigote stage-specific protein in Leishmania promastigotes. Mol Biochem Parasitol (1991) 0.84
Comparative codon and amino acid composition analysis of Tritryps-conspicuous features of Leishmania major. FEBS Lett (2007) 0.77
Comparative multivariate analysis of codon and amino acid usage in three Leishmania genomes. Genomics Proteomics Bioinformatics (2011) 0.76