Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea.

PubWeight™: 0.81‹?›

🔗 View Article (PMID 26897486)

Published in BMC Genomics on February 20, 2016

Authors

Aurore Desgroux1,2, Virginie L'Anthoëne3,4, Martine Roux-Duparque5,6, Jean-Philippe Rivière7,8, Grégoire Aubert9, Nadim Tayeh10, Anne Moussart11,12, Pierre Mangin13, Pierrick Vetel14,15, Christophe Piriou16,17, Rebecca J McGee18, Clarice J Coyne19, Judith Burstin20, Alain Baranger21,22, Maria Manzanares-Dauleux23,24, Virginie Bourion25, Marie-Laure Pilet-Nayel26,27

Author Affiliations

1: INRA, UMR IGEPP 1349, Institut de Génétique et Protection des Plantes, Domaine de la Motte au Vicomte, BP 35327, 35653, Le Rheu Cedex, France. aurore.desgroux@rennes.inra.fr.
2: INRA, UMR 1347 Agroécologie, 17 rue de Sully, 21065, Dijon Cedex, France. aurore.desgroux@rennes.inra.fr.
3: INRA, UMR IGEPP 1349, Institut de Génétique et Protection des Plantes, Domaine de la Motte au Vicomte, BP 35327, 35653, Le Rheu Cedex, France. Virginie.Merot@rdto.nestle.com.
4: Present Address: Nestlé R&D Center Tours, 101 Avenue Gustave Eiffel, 37097, Tours Cedex 2, France. Virginie.Merot@rdto.nestle.com.
5: GSP, Domaine Brunehaut, 80200, Estrées-Mons Cedex, France. martine.rouxduparque@ma02.org.
6: Present Address: Chambre d'Agriculture de l'Aisne, 1 rue René Blondelle, 02007, Laon Cedex, France. martine.rouxduparque@ma02.org.
7: INRA, UMR IGEPP 1349, Institut de Génétique et Protection des Plantes, Domaine de la Motte au Vicomte, BP 35327, 35653, Le Rheu Cedex, France. jean-philippe.riviere@rennes.inra.fr.
8: PISOM, UMT INRA/Terres Inovia, UMR IGEPP 1349, Domaine de la Motte au Vicomte, BP 35327, 35653, Le Rheu Cedex, France. jean-philippe.riviere@rennes.inra.fr.
9: INRA, UMR 1347 Agroécologie, 17 rue de Sully, 21065, Dijon Cedex, France. Gregoire.Aubert@dijon.inra.fr.
10: INRA, UMR 1347 Agroécologie, 17 rue de Sully, 21065, Dijon Cedex, France. Nadim.Tayeh@dijon.inra.fr.
11: PISOM, UMT INRA/Terres Inovia, UMR IGEPP 1349, Domaine de la Motte au Vicomte, BP 35327, 35653, Le Rheu Cedex, France. Anne.Moussard@rennes.inra.fr.
12: Terres Inovia, 11 rue de Monceau, CS 60003, 75378, Paris Cedex, France. Anne.Moussard@rennes.inra.fr.
13: INRA, Domaine Expérimental d'Epoisses, UE0115, 21110, Bretenières Cedex, France. pierre.mangin@dijon.inra.fr.
14: INRA, UMR IGEPP 1349, Institut de Génétique et Protection des Plantes, Domaine de la Motte au Vicomte, BP 35327, 35653, Le Rheu Cedex, France. Pierrick.Vetel@rennes.inra.fr.
15: PISOM, UMT INRA/Terres Inovia, UMR IGEPP 1349, Domaine de la Motte au Vicomte, BP 35327, 35653, Le Rheu Cedex, France. Pierrick.Vetel@rennes.inra.fr.
16: INRA, UMR IGEPP 1349, Institut de Génétique et Protection des Plantes, Domaine de la Motte au Vicomte, BP 35327, 35653, Le Rheu Cedex, France. Christophe.Piriou@rennes.inra.fr.
17: PISOM, UMT INRA/Terres Inovia, UMR IGEPP 1349, Domaine de la Motte au Vicomte, BP 35327, 35653, Le Rheu Cedex, France. Christophe.Piriou@rennes.inra.fr.
18: USDA, ARS, Grain Legume Genetics and Physiology Research Unit, Pullman, WA, 99164-6434, USA. Rebecca.McGee@ars.usda.gov.
19: USDA, ARS, Western Regional Plant Introduction Station, Washington State University, Pullman, WA, 99164-6402, USA. Clarice.Coyne@ars.usda.gov.
20: INRA, UMR 1347 Agroécologie, 17 rue de Sully, 21065, Dijon Cedex, France. judith.burstin@dijon.inra.fr.
21: INRA, UMR IGEPP 1349, Institut de Génétique et Protection des Plantes, Domaine de la Motte au Vicomte, BP 35327, 35653, Le Rheu Cedex, France. Alain.Baranger@rennes.inra.fr.
22: PISOM, UMT INRA/Terres Inovia, UMR IGEPP 1349, Domaine de la Motte au Vicomte, BP 35327, 35653, Le Rheu Cedex, France. Alain.Baranger@rennes.inra.fr.
23: INRA, UMR IGEPP 1349, Institut de Génétique et Protection des Plantes, Domaine de la Motte au Vicomte, BP 35327, 35653, Le Rheu Cedex, France. maria.manzanares@agrocampus-ouest.fr.
24: AgroCampus Ouest, UMR IGEPP 1349 IGEPP, 65 rue de Saint Brieuc, 35042, Rennes Cedex, France. maria.manzanares@agrocampus-ouest.fr.
25: INRA, UMR 1347 Agroécologie, 17 rue de Sully, 21065, Dijon Cedex, France. Virginie.Bourion@dijon.inra.fr.
26: INRA, UMR IGEPP 1349, Institut de Génétique et Protection des Plantes, Domaine de la Motte au Vicomte, BP 35327, 35653, Le Rheu Cedex, France. Marie-Laure.Pilet@rennes.inra.fr.
27: PISOM, UMT INRA/Terres Inovia, UMR IGEPP 1349, Domaine de la Motte au Vicomte, BP 35327, 35653, Le Rheu Cedex, France. Marie-Laure.Pilet@rennes.inra.fr.

Articles cited by this

PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet (2007) 209.92

Simultaneous inference in general parametric models. Biom J (2008) 23.64

MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered (2002) 17.48

Linkage disequilibrium and homozygosity of chromosome segments in finite populations. Theor Popul Biol (1971) 13.68

Genome-wide association studies of 14 agronomic traits in rice landraces. Nat Genet (2010) 8.75

Second-generation PLINK: rising to the challenge of larger and richer datasets. Gigascience (2015) 5.06

Genetic design and statistical power of nested association mapping in maize. Genetics (2008) 4.92

Association mapping: critical considerations shift from genotyping to experimental design. Plant Cell (2009) 4.59

GAPIT: genome association and prediction integrated tool. Bioinformatics (2012) 3.66

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations. Nat Genet (2012) 3.03

UNIFOLIATA regulates leaf and flower morphogenesis in pea. Curr Biol (1997) 2.27

Shades of gray: the world of quantitative disease resistance. Trends Plant Sci (2008) 2.10

From mutations to MAGIC: resources for gene discovery, validation and delivery in crop plants. Curr Opin Plant Biol (2008) 2.10

The advantages and limitations of trait analysis with GWAS: a review. Plant Methods (2013) 2.08

Identification and characterization of nucleotide-binding site-leucine-rich repeat genes in the model plant Medicago truncatula. Plant Physiol (2007) 2.01

Conservation of Arabidopsis flowering genes in model legumes. Plant Physiol (2005) 1.98

Microsatellite marker polymorphism and mapping in pea (Pisum sativum L.). Theor Appl Genet (2005) 1.79

Plant receptor-like serine threonine kinases: roles in signaling and plant defense. Mol Plant Microbe Interact (2008) 1.59

Natural variations and genome-wide association studies in crop plants. Annu Rev Plant Biol (2013) 1.50

Broad-spectrum and durability: understanding of quantitative disease resistance. Curr Opin Plant Biol (2010) 1.39

Quantitative disease resistance and quantitative resistance Loci in breeding. Annu Rev Phytopathol (2010) 1.38

Association genetics of complex traits in plants. New Phytol (2010) 1.37

Functional mapping in pea, as an aid to the candidate gene selection and for investigating synteny with the model legume Medicago truncatula. Theor Appl Genet (2006) 1.37

Cross-species identification of Mendel's I locus. Science (2007) 1.37

Impacts of resistance gene genetics, function, and evolution on a durable future. Annu Rev Phytopathol (2013) 1.22

The Pea DELLA proteins LA and CRY are important regulators of gibberellin synthesis and root growth. Plant Physiol (2008) 1.14

Plant-pathogen interactions: disease resistance in modern agriculture. Trends Genet (2012) 1.14

SNP marker discovery, linkage map construction and identification of QTLs for enhanced salinity tolerance in field pea (Pisum sativum L.). BMC Plant Biol (2013) 1.13

BioMercator V3: an upgrade of genetic map compilation and quantitative trait loci meta-analysis algorithms. Bioinformatics (2012) 1.12

A conserved molecular basis for photoperiod adaptation in two temperate legumes. Proc Natl Acad Sci U S A (2012) 1.08

Genome-Wide Association in Tomato Reveals 44 Candidate Loci for Fruit Metabolic Traits. Plant Physiol (2014) 1.08

Genome-wide association mapping for yield and other agronomic traits in an elite breeding population of tropical rice (Oryza sativa). PLoS One (2015) 1.06

Quantitative trait loci for partial resistance to Aphanomyces root rot in pea. Theor Appl Genet (2002) 1.01

Loci and candidate gene identification for resistance to Sclerotinia sclerotiorum in soybean (Glycine max L. Merr.) via association and linkage maps. Plant J (2015) 1.00

Full-length de novo assembly of RNA-seq data in pea (Pisum sativum L.) provides a gene expression atlas and gives insights into root nodulation in this species. Plant J (2015) 0.99

Candidate genes for quantitative resistance to Mycosphaerella pinodes in pea (Pisum sativum L.). Theor Appl Genet (2007) 0.98

Genome-wide association study reveals novel quantitative trait Loci associated with resistance to multiple leaf spot diseases of spring wheat. PLoS One (2014) 0.97

Transcriptome sequencing for high throughput SNP development and genetic mapping in Pea. BMC Genomics (2014) 0.97

Searching for novel sources of field resistance to Ug99 and Ethiopian stem rust races in durum wheat via association mapping. Theor Appl Genet (2013) 0.97

Gene-based SNP discovery and genetic mapping in pea. Theor Appl Genet (2014) 0.96

Genome-wide association study reveals a set of genes associated with resistance to the Mediterranean corn borer (Sesamia nonagrioides L.) in a maize diversity panel. BMC Plant Biol (2015) 0.92

Development of two major resources for pea genomics: the GenoPea 13.2K SNP Array and a high-density, high-resolution consensus genetic map. Plant J (2015) 0.92

Imputing missing genotypes with weighted k nearest neighbors. J Toxicol Environ Health A (2012) 0.92

New consistent QTL in pea associated with partial resistance to Aphanomyces euteiches in multiple French and American environments. Theor Appl Genet (2011) 0.92

Potential of a tomato MAGIC population to decipher the genetic control of quantitative traits and detect causal variants in the resequencing era. Plant Biotechnol J (2014) 0.91

Genetic diversity and trait genomic prediction in a pea diversity panel. BMC Genomics (2015) 0.90

Association mapping in crop plants: opportunities and challenges. Adv Genet (2014) 0.89

QTL meta-analysis provides a comprehensive view of loci controlling partial resistance to Aphanomyces euteiches in four sources of resistance in pea. BMC Plant Biol (2013) 0.88

Genome-wide association study of Fusarium ear rot disease in the U.S.A. maize inbred line collection. BMC Plant Biol (2014) 0.87

Resistance to gray leaf spot of maize: genetic architecture and mechanisms elucidated through nested association mapping and near-isogenic line analysis. PLoS Genet (2015) 0.87

Dissecting quantitative trait variation in the resequencing era: complementarity of bi-parental, multi-parental and association panels. Plant Sci (2015) 0.86

Genome-wide association mapping for stripe rust (Puccinia striiformis F. sp. tritici) in US Pacific Northwest winter wheat (Triticum aestivum L.). Theor Appl Genet (2015) 0.84

Consistent Quantitative Trait Loci in Pea for Partial Resistance to Aphanomyces euteiches Isolates from the United States and France. Phytopathology (2005) 0.84

SNP discovery and genetic mapping using genotyping by sequencing of whole genome genomic DNA from a pea RIL population. BMC Genomics (2016) 0.83

Validation of QTL for resistance to Aphanomyces euteiches in different pea genetic backgrounds using near-isogenic lines. Theor Appl Genet (2015) 0.82

A wheat ABC transporter contributes to both grain formation and mycotoxin tolerance. J Exp Bot (2015) 0.81

Gibberellin 3-oxidase gene expression patterns influence gibberellin biosynthesis, growth, and development in pea. Plant Physiol (2013) 0.78