Published in Nat Methods on March 28, 2016
Insights into the design and interpretation of iCLIP experiments. Genome Biol (2017) 1.40
Enhanced CLIP Uncovers IMP Protein-RNA Targets in Human Pluripotent Stem Cells Important for Cell Adhesion and Survival. Cell Rep (2016) 0.83
An Argonaute phosphorylation cycle promotes microRNA-mediated silencing. Nature (2017) 0.82
Advances in the characterization of RNA-binding proteins. Wiley Interdiscip Rev RNA (2016) 0.81
Mechanistic insights in X-chromosome inactivation. Philos Trans R Soc Lond B Biol Sci (2017) 0.81
Biallelic mutations in the 3' exonuclease TOE1 cause pontocerebellar hypoplasia and uncover a role in snRNA processing. Nat Genet (2017) 0.80
Protein-RNA Networks Regulated by Normal and ALS-Associated Mutant HNRNPA2B1 in the Nervous System. Neuron (2016) 0.79
RNA Sequence Context Effects Measured In Vitro Predict In Vivo Protein Binding and Regulation. Mol Cell (2016) 0.79
SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes. Mol Cell (2016) 0.78
Kinetic CRAC uncovers a role for Nab3 in determining gene expression profiles during stress. Nat Commun (2017) 0.77
Quantifying RNA binding sites transcriptome-wide using DO-RIP-seq. RNA (2016) 0.77
Identifying proteins that bind to specific RNAs - focus on simple repeat expansion diseases. Nucleic Acids Res (2016) 0.76
RNA Matchmaking: Finding Cellular Pairing Partners. Mol Cell (2016) 0.76
COME: a robust coding potential calculation tool for lncRNA identification and characterization based on multiple features. Nucleic Acids Res (2016) 0.76
Ancient antagonism between CELF and RBFOX families tunes mRNA splicing outcomes. Genome Res (2017) 0.75
Redesigning CLIP for efficiency, accuracy and speed. Nat Methods (2016) 0.75
The mRNA-bound proteome of the human malaria parasite Plasmodium falciparum. Genome Biol (2016) 0.75
POSTAR: a platform for exploring post-transcriptional regulation coordinated by RNA-binding proteins. Nucleic Acids Res (2016) 0.75
CRISPR/Cas9-mediated integration enables TAG-eCLIP of endogenously tagged RNA binding proteins. Methods (2016) 0.75
TargetLink, a new method for identifying the endogenous target set of a specific microRNA in intact living cells. RNA Biol (2016) 0.75
Both Maintenance and Avoidance of RNA-Binding Protein Interactions Constrain Coding Sequence Evolution. Mol Biol Evol (2017) 0.75
Advances in analyzing RNA diversity in eukaryotic transcriptomes: peering through the Omics lens. F1000Res (2016) 0.75
Quantitative predictions of protein interactions with long noncoding RNAs. Nat Methods (2016) 0.75
Structural Characteristics of Simple RNA Repeats Associated with Disease and their Deleterious Protein Interactions. Front Cell Neurosci (2017) 0.75
The roles of RNA processing in translating genotype to phenotype. Nat Rev Mol Cell Biol (2016) 0.75
Highly accessible AU-rich regions in 3' untranslated regions are hotspots for binding of regulatory factors. PLoS Comput Biol (2017) 0.75
A GC-rich sequence feature in the 3' UTR directs UPF1-dependent mRNA decay in mammalian cells. Genome Res (2016) 0.75
Antisense Oligonucleotides Modulating Activation of a Nonsense-Mediated RNA Decay Switch Exon in the ATM Gene. Nucleic Acid Ther (2016) 0.75
Synthetic mRNA devices that detect endogenous proteins and distinguish mammalian cells. Nucleic Acids Res (2017) 0.75
Bioinformatic tools for analysis of CLIP ribonucleoprotein data. Wiley Interdiscip Rev RNA (2016) 0.75
sCLIP-an integrated platform to study RNA-protein interactomes in biomedical research: identification of CSTF2tau in alternative processing of small nuclear RNAs. Nucleic Acids Res (2017) 0.75
cTag-PAPERCLIP Reveals Alternative Polyadenylation Promotes Cell-Type Specific Protein Diversity and Shifts Araf Isoforms with Microglia Activation. Neuron (2017) 0.75
Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell (2010) 17.87
PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls. Nat Biotechnol (2009) 11.28
CLIP identifies Nova-regulated RNA networks in the brain. Science (2003) 8.88
The nuclear-retained noncoding RNA MALAT1 regulates alternative splicing by modulating SR splicing factor phosphorylation. Mol Cell (2010) 8.66
FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism. Cell (2011) 8.46
An RNA code for the FOX2 splicing regulator revealed by mapping RNA-protein interactions in stem cells. Nat Struct Mol Biol (2009) 6.37
iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution. Nat Struct Mol Biol (2010) 5.98
Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays. Proc Natl Acad Sci U S A (2000) 4.99
The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3. Nature (2015) 3.60
Prp8 protein: at the heart of the spliceosome. RNA (2005) 2.89
LARP7 is a stable component of the 7SK snRNP while P-TEFb, HEXIM1 and hnRNP A1 are reversibly associated. Nucleic Acids Res (2008) 2.38
Systematic discovery of Xist RNA binding proteins. Cell (2015) 2.26
A day in the life of the spliceosome. Nat Rev Mol Cell Biol (2014) 2.18
A census of human RNA-binding proteins. Nat Rev Genet (2014) 2.10
HITS-CLIP and integrative modeling define the Rbfox splicing-regulatory network linked to brain development and autism. Cell Rep (2014) 1.78
iCLIP: protein-RNA interactions at nucleotide resolution. Methods (2013) 1.61
Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges. Nat Struct Mol Biol (2013) 1.49
RNA-binding proteins in Mendelian disease. Trends Genet (2013) 1.38
Advancing the functional utility of PAR-CLIP by quantifying background binding to mRNAs and lncRNAs. Genome Biol (2014) 1.24
SPF30 is an essential human splicing factor required for assembly of the U4/U5/U6 tri-small nuclear ribonucleoprotein into the spliceosome. J Biol Chem (2001) 1.20
The A-repeat links ASF/SF2-dependent Xist RNA processing with random choice during X inactivation. Nat Struct Mol Biol (2010) 1.14
RNA-binding proteins in neurodegeneration: Seq and you shall receive. Trends Neurosci (2015) 1.03
Simultaneous generation of many RNA-seq libraries in a single reaction. Nat Methods (2015) 1.00
The human mitochondrial transcriptome and the RNA-binding proteins that regulate its expression. Wiley Interdiscip Rev RNA (2012) 0.96
Resources for the Comprehensive Discovery of Functional RNA Elements. Mol Cell (2016) 0.92
Regulation of MALAT1 expression by TDP43 controls the migration and invasion of non-small cell lung cancer cells in vitro. Biochem Biophys Res Commun (2015) 0.87
A multiprotein occupancy map of the mRNP on the 3' end of histone mRNAs. RNA (2015) 0.87
BackCLIP: a tool to identify common background presence in PAR-CLIP datasets. Bioinformatics (2015) 0.81
A bifunctional protein regulates mitochondrial protein synthesis. Nucleic Acids Res (2014) 0.80
Simultaneous generation of many RNA-seq libraries in a single reaction. Nat Methods (2015) 1.00
RNA-binding protein CPEB1 remodels host and viral RNA landscapes. Nat Struct Mol Biol (2016) 0.75