Analysis of the human immunodeficiency virus-1 RNA packageome.

PubWeight™: 0.81‹?›

🔗 View Article (PMID 27247436)

Published in RNA on May 31, 2016

Authors

Matthew J Eckwahl1, Helene Arnion1, Siarhei Kharytonchyk2, Trinity Zang3, Paul D Bieniasz3, Alice Telesnitsky2, Sandra L Wolin4

Author Affiliations

1: Department of Cell Biology, Yale School of Medicine, New Haven, Connecticut 06536, USA.
2: Department of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan 48109, USA.
3: Aaron Diamond AIDS Research Center, The Rockefeller University, New York, New York 10016, USA Laboratory of Retrovirology, The Rockefeller University, New York, New York 10016, USA Howard Hughes Medical Institute, The Rockefeller University, New York, New York 10016, USA.
4: Department of Cell Biology, Yale School of Medicine, New Haven, Connecticut 06536, USA Department of Molecular Biophysics and Biochemistry, Yale School of Medicine, New Haven, Connecticut 06536, USA Yale Cancer Center, Yale School of Medicine, New Haven, Connecticut 06520, USA.

Articles cited by this

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol (2009) 235.12

Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics (2009) 190.94

BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics (2010) 53.23

Production of acquired immunodeficiency syndrome-associated retrovirus in human and nonhuman cells transfected with an infectious molecular clone. J Virol (1986) 37.70

Construction of a retrovirus packaging mutant and its use to produce helper-free defective retrovirus. Cell (1983) 25.46

RNA-Seq gene expression estimation with read mapping uncertainty. Bioinformatics (2009) 10.74

The regulated retrotransposon transcriptome of mammalian cells. Nat Genet (2009) 5.79

Self-assembly in vitro of purified CA-NC proteins from Rous sarcoma virus and human immunodeficiency virus type 1. J Virol (1995) 5.21

RNA packaging. Curr Top Microbiol Immunol (1996) 4.88

Transcription of DNA from the 70S RNA of Rous sarcoma virus. I. Identification of a specific 4S RNA which serves as primer. J Virol (1974) 3.90

Simple, rapid, quantitative, syncytium-forming microassay for the detection of human immunodeficiency virus neutralizing antibody. AIDS Res Hum Retroviruses (1987) 3.67

Integrator, a multiprotein mediator of small nuclear RNA processing, associates with the C-terminal repeat of RNA polymerase II. Cell (2005) 3.66

Active human retrotransposons: variation and disease. Curr Opin Genet Dev (2012) 3.60

RNA is a structural element in retrovirus particles. Proc Natl Acad Sci U S A (2001) 3.45

Deficiency of 60 to 70S RNA in murine leukemia virus particles assembled in cells treated with actinomycin D. J Virol (1974) 3.37

In vitro assembly properties of human immunodeficiency virus type 1 Gag protein lacking the p6 domain. J Virol (1999) 3.34

HIV-1 assembly, budding, and maturation. Cold Spring Harb Perspect Med (2012) 3.17

Transcription of mouse rDNA terminates downstream of the 3' end of 28S RNA and involves interaction of factors with repeated sequences in the 3' spacer. Cell (1985) 3.03

Transcription of DNA from the 70S RNA of Rous sarcoma virus. II. Structure of a 4S RNA primer. J Virol (1974) 2.73

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms. Nat Biotechnol (2014) 2.65

A day in the life of the spliceosome. Nat Rev Mol Cell Biol (2014) 2.18

The low molecular weight RNAs of Rous sarcoma virus. II. The 7 S RNA. Virology (1970) 2.08

Modulation of HIV-like particle assembly in vitro by inositol phosphates. Proc Natl Acad Sci U S A (2001) 2.07

Global changes in the RNA binding specificity of HIV-1 gag regulate virion genesis. Cell (2014) 2.01

Signal recognition particle components in the nucleolus. Proc Natl Acad Sci U S A (2000) 1.95

7SL RNA mediates virion packaging of the antiviral cytidine deaminase APOBEC3G. J Virol (2007) 1.91

Immobilization of proteins in the nucleolus by ribosomal intergenic spacer noncoding RNA. Mol Cell (2012) 1.90

Selective and nonselective packaging of cellular RNAs in retrovirus particles. J Virol (2007) 1.79

Two additional potential retrotransposons isolated from a human L1 subfamily that contains an active retrotransposable element. Proc Natl Acad Sci U S A (1993) 1.76

Vaults are up-regulated in multidrug-resistant cancer cell lines. J Biol Chem (1998) 1.74

NMR detection of structures in the HIV-1 5'-leader RNA that regulate genome packaging. Science (2011) 1.66

Analysis of the initiating events in HIV-1 particle assembly and genome packaging. PLoS Pathog (2010) 1.66

Rous sarcoma virus Gag protein-oligonucleotide interaction suggests a critical role for protein dimer formation in assembly. J Virol (2002) 1.56

Comparison of oligonucleotides produced by RNase T1 digestion of 7 S RNA from avian and murine oncornaviruses and from uninfected cells. Virology (1973) 1.51

7SL RNA, but not the 54-kd signal recognition particle protein, is an abundant component of both infectious HIV-1 and minimal virus-like particles. RNA (2006) 1.50

Incorporation of excess wild-type and mutant tRNA(3Lys) into human immunodeficiency virus type 1. J Virol (1994) 1.49

Analysis of the contribution of cellular and viral RNA to the packaging of APOBEC3G into HIV-1 virions. Retrovirology (2007) 1.48

Biogenesis of the signal recognition particle (SRP) involves import of SRP proteins into the nucleolus, assembly with the SRP-RNA, and Xpo1p-mediated export. J Cell Biol (2001) 1.41

HIV controls the selective packaging of genomic, spliced viral and cellular RNAs into virions through different mechanisms. Nucleic Acids Res (2007) 1.38

Structure and functional properties of mouse VL30 retrotransposons. Biochim Biophys Acta (1997) 1.35

Characterization of APOBEC3G binding to 7SL RNA. Retrovirology (2008) 1.34

Reprogramming somatic cells into iPS cells activates LINE-1 retroelement mobility. Hum Mol Genet (2011) 1.31

Nonrandom packaging of host RNAs in moloney murine leukemia virus. J Virol (2005) 1.30

Retrovirus-specific packaging of aminoacyl-tRNA synthetases with cognate primer tRNAs. J Virol (2002) 1.27

Gemin5 delivers snRNA precursors to the SMN complex for snRNP biogenesis. Mol Cell (2010) 1.27

U12 snRNA in vertebrates: evolutionary conservation of 5' sequences implicated in splicing of pre-mRNAs containing a minor class of introns. RNA (1995) 1.25

Efficient and quantitative high-throughput tRNA sequencing. Nat Methods (2015) 1.21

Single-stranded RNA facilitates nucleocapsid: APOBEC3G complex formation. RNA (2008) 1.19

Diverse interactions of retroviral Gag proteins with RNAs. Trends Biochem Sci (2011) 1.18

Epigenetic control of retrotransposon expression in human embryonic stem cells. Mol Cell Biol (2010) 1.14

Human U1 small nuclear RNA pseudogenes do not map to the site of the U1 genes in 1p36 but are clustered in 1q12-q22. Mol Cell Biol (1985) 1.14

Profiling non-lysyl tRNAs in HIV-1. RNA (2009) 1.14

Packaging and reverse transcription of snRNAs by retroviruses may generate pseudogenes. RNA (2004) 1.10

Quantification of reverse transcriptase activity by real-time PCR as a fast and accurate method for titration of HIV, lenti- and retroviral vectors. PLoS One (2012) 1.08

Cellular dynamics of small RNAs. Crit Rev Biochem Mol Biol (2006) 1.07

Differentially expressed, variant U1 snRNAs regulate gene expression in human cells. Genome Res (2012) 1.02

Packaging of host mY RNAs by murine leukemia virus may occur early in Y RNA biogenesis. J Virol (2009) 1.01

7SL RNA is retained in HIV-1 minimal virus-like particles as an S-domain fragment. J Virol (2010) 0.99

Virion packaging determinants and reverse transcription of SRP RNA in HIV-1 particles. Nucleic Acids Res (2007) 0.99

The evolution and expression of the snaR family of small non-coding RNAs. Nucleic Acids Res (2010) 0.97

LINEs, SINEs and other retroelements: do birds of a feather flock together? Front Biosci (Landmark Ed) (2012) 0.93

Functional redundancy in HIV-1 viral particle assembly. J Virol (2012) 0.92

Nuclear noncoding RNA surveillance: is the end in sight? Trends Genet (2012) 0.92

Analysis of pre-rRNAs in heat-shocked HeLa cells allows identification of the upstream termination site of human polymerase I transcription. Mol Cell Biol (1989) 0.92

Promiscuous RNA binding ensures effective encapsidation of APOBEC3 proteins by HIV-1. PLoS Pathog (2015) 0.89

Selective nuclear export mechanism of small RNAs. Curr Opin Struct Biol (2010) 0.89

Live-cell observation of cytosolic HIV-1 assembly onset reveals RNA-interacting Gag oligomers. J Cell Biol (2015) 0.88

Selective packaging of cellular miRNAs in HIV-1 particles. Virus Res (2012) 0.86

cis-Acting determinants of 7SL RNA packaging by HIV-1. J Virol (2012) 0.85

Nuclear trafficking of retroviral RNAs and Gag proteins during late steps of replication. Viruses (2013) 0.85

Heat shock stabilizes highly unstable transcripts of the Xenopus ribosomal gene spacer. Proc Natl Acad Sci U S A (1987) 0.82

A retrovirus packages nascent host noncoding RNAs from a novel surveillance pathway. Genes Dev (2015) 0.81

U6 RNA biogenesis and disease association. Wiley Interdiscip Rev RNA (2013) 0.80

Exportin-5 mediates nuclear export of SRP RNA in vertebrates. Genes Cells (2015) 0.79

Host RNA Packaging by Retroviruses: A Newly Synthesized Story. MBio (2016) 0.79