Published in PeerJ on May 24, 2016
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet (2000) 69.26
RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet (2009) 58.77
The Bioperl toolkit: Perl modules for the life sciences. Genome Res (2002) 58.63
Improved prediction of signal peptides: SignalP 3.0. J Mol Biol (2004) 48.40
Electrostatics of nanosystems: application to microtubules and the ribosome. Proc Natl Acad Sci U S A (2001) 42.14
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal Chem (2002) 35.30
A statistical model for identifying proteins by tandem mass spectrometry. Anal Chem (2003) 29.58
Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc (2007) 19.50
Correlation between protein and mRNA abundance in yeast. Mol Cell Biol (1999) 16.95
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations. Nucleic Acids Res (2004) 11.53
Differential expression of microRNAs in plasma of patients with colorectal cancer: a potential marker for colorectal cancer screening. Gut (2009) 8.98
Antifungal Hydrolases in Pea Tissue : II. Inhibition of Fungal Growth by Combinations of Chitinase and beta-1,3-Glucanase. Plant Physiol (1988) 7.10
Receptor-like kinases from Arabidopsis form a monophyletic gene family related to animal receptor kinases. Proc Natl Acad Sci U S A (2001) 7.01
Enzyme recruitment in evolution of new function. Annu Rev Microbiol (1976) 6.95
Significance of inducible defense-related proteins in infected plants. Annu Rev Phytopathol (2006) 6.91
Large-scale gene function analysis with the PANTHER classification system. Nat Protoc (2013) 6.41
The current state of two-dimensional electrophoresis with immobilized pH gradients. Electrophoresis (2000) 5.23
Enzyme promiscuity: a mechanistic and evolutionary perspective. Annu Rev Biochem (2010) 4.41
Receptor-like cytoplasmic kinases integrate signaling from multiple plant immune receptors and are targeted by a Pseudomonas syringae effector. Cell Host Microbe (2010) 3.73
A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes. Anal Chem (2003) 3.50
Significance analysis of spectral count data in label-free shotgun proteomics. Mol Cell Proteomics (2008) 3.12
Recognition of spatial motifs in protein structures. J Mol Biol (1999) 2.94
Evidence for N- and C-terminal processing of a plant defense-related enzyme: Primary structure of tobacco prepro-beta-1,3-glucanase. Proc Natl Acad Sci U S A (1988) 2.86
Enzymes with extra talents: moonlighting functions and catalytic promiscuity. Curr Opin Chem Biol (2003) 2.56
FATCAT: a web server for flexible structure comparison and structure similarity searching. Nucleic Acids Res (2004) 2.49
Only Specific Tobacco (Nicotiana tabacum) Chitinases and [beta]-1,3-Glucanases Exhibit Antifungal Activity. Plant Physiol (1993) 2.13
Living in two worlds: the plant and insect lifestyles of Xylella fastidiosa. Annu Rev Phytopathol (2008) 1.95
Recent advances in PAMP-triggered immunity against bacteria: pattern recognition receptors watch over and raise the alarm. Plant Physiol (2009) 1.84
Fungal cell wall chitinases and glucanases. Microbiology (2004) 1.82
Stitching together multiple data dimensions reveals interacting metabolomic and transcriptomic networks that modulate cell regulation. PLoS Biol (2012) 1.82
Three-dimensional structure of a barley beta-D-glucan exohydrolase, a family 3 glycosyl hydrolase. Structure (1999) 1.80
ProBiS algorithm for detection of structurally similar protein binding sites by local structural alignment. Bioinformatics (2010) 1.72
Plant receptor-like serine threonine kinases: roles in signaling and plant defense. Mol Plant Microbe Interact (2008) 1.59
Convergent evolution of enzyme active sites is not a rare phenomenon. J Mol Biol (2007) 1.55
Chitinase family GH18: evolutionary insights from the genomic history of a diverse protein family. BMC Evol Biol (2007) 1.47
The mixed xylem sap proteome of Fusarium oxysporum-infected tomato plants. Mol Plant Pathol (2007) 1.41
Durable panicle blast-resistance gene Pb1 encodes an atypical CC-NBS-LRR protein and was generated by acquiring a promoter through local genome duplication. Plant J (2010) 1.35
Uclacyanins, stellacyanins, and plantacyanins are distinct subfamilies of phytocyanins: plant-specific mononuclear blue copper proteins. Protein Sci (1998) 1.35
Patterns of gene expression upon infection of soybean plants by Phytophthora sojae. Mol Plant Microbe Interact (2004) 1.33
The superfamily of thaumatin-like proteins: its origin, evolution, and expression towards biological function. Plant Cell Rep (2010) 1.31
Mass spectrometric identification of isoforms of PR proteins in xylem sap of fungus-infected tomato. Plant Physiol (2002) 1.25
Xylem sap protein composition is conserved among different plant species. Planta (2004) 1.19
Defence reactions in the apoplastic proteome of oilseed rape (Brassica napus var. napus) attenuate Verticillium longisporum growth but not disease symptoms. BMC Plant Biol (2008) 1.18
Analysis of xylem sap proteins from Brassica napus. BMC Plant Biol (2005) 1.09
Proteomics of methyl jasmonate induced defense response in maize leaves against Asian corn borer. BMC Genomics (2015) 1.09
The glycine max xylem sap and apoplast proteome. J Proteome Res (2007) 1.07
Molecular cloning and characterization of two pathogenesis-related β-1,3-glucanase genes ScGluA1 and ScGluD1 from sugarcane infected by Sporisorium scitamineum. Plant Cell Rep (2013) 1.07
Identification of the dehydrin gene family from grapevine species and analysis of their responsiveness to various forms of abiotic and biotic stress. BMC Plant Biol (2012) 1.06
Salt stress-induced alterations in the root proteome of barley genotypes with contrasting response towards salinity. J Exp Bot (2009) 1.04
Vascular defense responses in rice: peroxidase accumulation in xylem parenchyma cells and xylem wall thickening. Mol Plant Microbe Interact (2001) 1.03
Xylem sap proteins. Plant Physiol (1991) 1.03
The arabidopsis TIR-NB-LRR gene RAC1 confers resistance to Albugo candida (white rust) and is dependent on EDS1 but not PAD4. Mol Plant Microbe Interact (2004) 1.00
Chitinases: An update. J Pharm Bioallied Sci (2013) 0.99
Genome-wide analysis of eukaryote thaumatin-like proteins (TLPs) with an emphasis on poplar. BMC Plant Biol (2011) 0.99
Long distance movement of DIR1 and investigation of the role of DIR1-like during systemic acquired resistance in Arabidopsis. Front Plant Sci (2013) 0.99
Analysis of the xylem sap proteome of Brassica oleracea reveals a high content in secreted proteins. Proteomics (2011) 0.98
An engineered innate immune defense protects grapevines from Pierce disease. Proc Natl Acad Sci U S A (2012) 0.97
Isolation and RNA gel blot analysis of genes that could serve as potential molecular markers for leaf senescence in Arabidopsis thaliana. Plant Cell Physiol (2001) 0.97
Secreted proteins of tobacco cultured BY2 cells: identification of a new member of pathogenesis-related proteins. Plant Mol Biol (2000) 0.97
Grapevine phenolic compounds in xylem sap and tissues are significantly altered during infection by Xylella fastidiosa. Phytopathology (2012) 0.95
Comparative analysis of ESTs involved in grape responses to Xylella fastidiosa infection. BMC Plant Biol (2007) 0.95
Plant β-1,3-glucanases: their biological functions and transgenic expression against phytopathogenic fungi. Biotechnol Lett (2012) 0.93
Interactive effects of water stress and xylem-limited bacterial infection on the water relations of a host vine. J Exp Bot (2003) 0.92
Active site detection by spatial conformity and electrostatic analysis--unravelling a proteolytic function in shrimp alkaline phosphatase. PLoS One (2011) 0.90
Distinct changes in soybean xylem sap proteome in response to pathogenic and symbiotic microbe interactions. BMC Plant Biol (2009) 0.90
A measure of the promiscuity of proteins and characteristics of residues in the vicinity of the catalytic site that regulate promiscuity. PLoS One (2012) 0.89
Xylem sap in cotton contains proteins that contribute to environmental stress response and cell wall development. Funct Integr Genomics (2014) 0.86
Proteomic analysis of hybrid poplar xylem sap. Phytochemistry (2009) 0.86
RNA-Seq analysis of Citrus reticulata in the early stages of Xylella fastidiosa infection reveals auxin-related genes as a defense response. BMC Genomics (2013) 0.84
A class V chitinase from Arabidopsis thaliana: gene responses, enzymatic properties, and crystallographic analysis. Planta (2011) 0.84
Tracing cationic nutrients from xylem into stem tissue of French bean by stable isotope tracers and cryo-secondary ion mass spectrometry. Plant Physiol (2009) 0.83
Proteomics approach to identify unique xylem sap proteins in Pierce's disease-tolerant Vitis species. Appl Biochem Biotechnol (2009) 0.83
Fumonisin B1, a toxin produced by Fusarium verticillioides, modulates maize β-1,3-glucanase activities involved in defense response. Planta (2011) 0.83
An automated flow for directed evolution based on detection of promiscuous scaffolds using spatial and electrostatic properties of catalytic residues. PLoS One (2012) 0.83
The effector repertoire of Fusarium oxysporum determines the tomato xylem proteome composition following infection. Front Plant Sci (2015) 0.81
Differential expression of genes of Xylella fastidiosa in xylem fluid of citrus and grapevine. FEMS Microbiol Lett (2010) 0.80
Identification of indicator proteins associated with flooding injury in soybean seedlings using label-free quantitative proteomics. J Proteome Res (2013) 0.80
Over-expression of TaEXPB23, a wheat expansin gene, improves oxidative stress tolerance in transgenic tobacco plants. J Plant Physiol (2014) 0.79
Advances in plant proteomics toward improvement of crop productivity and stress resistancex. Front Plant Sci (2015) 0.79
Genome-wide identification and characterization of maize expansin genes expressed in endosperm. Mol Genet Genomics (2014) 0.79
Promiscuity-based enzyme selection for rational directed evolution experiments. Methods Mol Biol (2013) 0.78
Xylem sap proteomics. Methods Mol Biol (2014) 0.78
Dimerization and protease resistance: new insight into the function of PR-1. J Plant Physiol (2012) 0.78
Comparative study of two GH19 chitinase-like proteins from Hevea brasiliensis, one exhibiting a novel carbohydrate-binding domain. FEBS J (2014) 0.77
Comparative analysis of the phytocyanin gene family in 10 plant species: a focus on Zea mays. Front Plant Sci (2015) 0.77
Changes in the Proteome of Xylem Sap in Brassica oleracea in Response to Fusarium oxysporum Stress. Front Plant Sci (2016) 0.77
Deep RNA-Seq profile reveals biodiversity, plant-microbe interactions and a large family of NBS-LRR resistance genes in walnut (Juglans regia) tissues. AMB Express (2016) 0.77
Suppression of tobacco basic chitinase gene expression in response to colonization by the arbuscular mycorrhizal fungus Glomus intraradices. Mol Plant Microbe Interact (1998) 0.76
ZmGns, a maize class I β-1,3-glucanase, is induced by biotic stresses and possesses strong antimicrobial activity. J Integr Plant Biol (2014) 0.76
Proteome Biomarkers in Xylem Reveal Pierce's Disease Tolerance in Grape. J Proteomics Bioinform (2016) 0.75