Published in Microbiome on September 30, 2014
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. Nature (2015) 4.98
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns. mSystems (2017) 0.86
Weight gain in anorexia nervosa does not ameliorate the faecal microbiota, branched chain fatty acid profiles, and gastrointestinal complaints. Sci Rep (2016) 0.79
A novel conceptual approach to read-filtering in high-throughput amplicon sequencing studies. Nucleic Acids Res (2015) 0.78
Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-naïve Parkinson's disease patients. Genome Med (2017) 0.75
Sampling Strategies for Three-Dimensional Spatial Community Structures in IBD Microbiota Research. Front Cell Infect Microbiol (2017) 0.75
Microbiome Changes during Tuberculosis and Antituberculous Therapy. Clin Microbiol Rev (2016) 0.75
Temporal Stability and the Effect of Transgenerational Transfer on Fecal Microbiota Structure in a Long Distance Migratory Bird. Front Microbiol (2017) 0.75
Colonization and Succession within the Human Gut Microbiome by Archaea, Bacteria, and Microeukaryotes during the First Year of Life. Front Microbiol (2017) 0.75
Distinct Microbiome-Neuroimmune Signatures Correlate With Functional Abdominal Pain in Children With Autism Spectrum Disorder. Cell Mol Gastroenterol Hepatol (2016) 0.75
Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons. PeerJ (2017) 0.75
Bacterial Communities in Boreal Forest Mushrooms Are Shaped Both by Soil Parameters and Host Identity. Front Microbiol (2017) 0.75
Variation between the oral and faecal microbiota in a free-living passerine bird, the great tit (Parus major). PLoS One (2017) 0.75
Insights into study design and statistical analyses in translational microbiome studies. Ann Transl Med (2017) 0.75
Basic local alignment search tool. J Mol Biol (1990) 659.07
QIIME allows analysis of high-throughput community sequencing data. Nat Methods (2010) 85.34
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol (2009) 77.55
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol (2007) 60.97
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res (2008) 52.43
Search and clustering orders of magnitude faster than BLAST. Bioinformatics (2010) 51.97
UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol (2005) 49.76
The detection of disease clustering and a generalized regression approach. Cancer Res (1967) 39.90
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res (2007) 35.65
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega. Mol Syst Biol (2011) 28.61
FastTree 2--approximately maximum-likelihood trees for large alignments. PLoS One (2010) 26.15
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res (2012) 19.48
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons. Genome Res (2011) 17.21
FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics (2011) 13.71
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea. ISME J (2011) 13.64
UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nat Methods (2013) 12.05
Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis. Appl Environ Microbiol (2011) 4.55
Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice. Genome Biol (2013) 1.97
MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences. Nucleic Acids Res (2014) 1.15
The deletion of TonB-dependent receptor genes is part of the genome reduction process that occurs during adaptation of Pseudomonas aeruginosa to the cystic fibrosis lung. Pathog Dis (2014) 0.86
Analysis of the draft genome of Pseudomonas fluorescens ATCC17400 indicates a capacity to take up iron from a wide range of sources, including different exogenous pyoverdines. Biometals (2014) 0.79