Published in Plant Physiol on July 03, 2016
The Huperzia selago Shoot Tip Transcriptome Sheds New Light on the Evolution of Leaves. Genome Biol Evol (2017) 0.75
KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res (2000) 117.00
BLAST+: architecture and applications. BMC Bioinformatics (2009) 36.53
OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res (2003) 33.03
The evolutionary fate and consequences of duplicate genes. Science (2000) 24.22
Scaffolding pre-assembled contigs using SSPACE. Bioinformatics (2010) 23.27
A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science (2002) 21.26
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat Protoc (2013) 13.33
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics (2007) 12.21
Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature (2010) 9.52
Gene prediction with a hidden Markov model and a new intron submodel. Bioinformatics (2003) 8.92
Gene finding in novel genomes. BMC Bioinformatics (2004) 8.64
InterProScan 5: genome-scale protein function classification. Bioinformatics (2014) 8.52
De novo identification of repeat families in large genomes. Bioinformatics (2005) 7.95
Ancestral polyploidy in seed plants and angiosperms. Nature (2011) 7.00
Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae). Mol Biol Evol (2000) 6.61
Automated de novo identification of repeat sequence families in sequenced genomes. Genome Res (2002) 6.36
MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects. BMC Bioinformatics (2011) 5.35
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics (2015) 5.24
ETHYLENE RESPONSE FACTOR1 integrates signals from ethylene and jasmonate pathways in plant defense. Plant Cell (2003) 5.08
Using the Velvet de novo assembler for short-read sequencing technologies. Curr Protoc Bioinformatics (2010) 4.88
Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages. J Mol Evol (1999) 4.37
Widespread genome duplications throughout the history of flowering plants. Genome Res (2006) 4.07
Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science (2014) 3.74
The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature (2012) 3.53
Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy. Plant Cell (2006) 3.10
Scaling metagenome sequence assembly with probabilistic de Bruijn graphs. Proc Natl Acad Sci U S A (2012) 3.10
A beginner's guide to eukaryotic genome annotation. Nat Rev Genet (2012) 2.67
The Amborella genome and the evolution of flowering plants. Science (2013) 2.62
The genome of the seagrass Zostera marina reveals angiosperm adaptation to the sea. Nature (2016) 2.27
Isolation and partial characterization of apiogalacturonans from the cell wall of Lemna minor. Biochem J (1970) 1.72
The genome of flax (Linum usitatissimum) assembled de novo from short shotgun sequence reads. Plant J (2012) 1.62
Genome sequence of the date palm Phoenix dactylifera L. Nat Commun (2013) 1.35
Transcriptional profiling by cDNA-AFLP and microarray analysis reveals novel insights into the early response to ethylene in Arabidopsis. Plant J (2004) 1.25
Back to the sea twice: identifying candidate plant genes for molecular evolution to marine life. BMC Evol Biol (2011) 1.25
Interaction between MYC2 and ETHYLENE INSENSITIVE3 modulates antagonism between jasmonate and ethylene signaling in Arabidopsis. Plant Cell (2014) 1.14
The pineapple genome and the evolution of CAM photosynthesis. Nat Genet (2015) 1.08
Effects of CO(2) enrichment on photosynthesis, growth, and nitrogen metabolism of the seagrass Zostera noltii. Ecol Evol (2012) 1.06
Dr. Zompo: an online data repository for Zostera marina and Posidonia oceanica ESTs. Database (Oxford) (2009) 1.05
The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle. Nat Commun (2014) 1.03
Response of the seagrass Posidonia oceanica to different light environments: Insights from a combined molecular and photo-physiological study. Mar Environ Res (2014) 0.96
A Pivotal Role of DELLAs in Regulating Multiple Hormone Signals. Mol Plant (2015) 0.96
Integrated syntenic and phylogenomic analyses reveal an ancient genome duplication in monocots. Plant Cell (2014) 0.94
Acclimation to different depths by the marine angiosperm Posidonia oceanica: transcriptomic and proteomic profiles. Front Plant Sci (2013) 0.91
Genome-wide survey of the seagrass Zostera muelleri suggests modification of the ethylene signalling network. J Exp Bot (2015) 0.84
Genome-wide transcriptomic responses of the seagrasses Zostera marina and Nanozostera noltii under a simulated heatwave confirm functional types. Mar Genomics (2014) 0.83
The role of jasmonic acid and ethylene crosstalk in direct defense of Nicotiana attenuata plants against chewing herbivores. Plant Signal Behav (2010) 0.82
Photosynthetic response to globally increasing CO2 of co-occurring temperate seagrass species. Plant Cell Environ (2016) 0.79
De novo assembly and characterization of the transcriptome of seagrass Zostera marina using Illumina paired-end sequencing. PLoS One (2014) 0.79
Cerium binding activity of pectins isolated from the seagrasses Zostera marina and Phyllospadix iwatensis. Mar Drugs (2012) 0.78
Analysis of the repetitive component and retrotransposon population in the genome of a marine angiosperm, Posidonia oceanica (L.) Delile. Mar Genomics (2015) 0.76
Cloning of TPS gene from eelgrass species Zostera marina and its functional identification by genetic transformation in rice. Gene (2013) 0.76
The pineapple genome and the evolution of CAM photosynthesis. Nat Genet (2015) 1.08
Insight into the evolution of the Solanaceae from the parental genomes of Petunia hybrida. Nat Plants (2016) 0.94
Integrated syntenic and phylogenomic analyses reveal an ancient genome duplication in monocots. Plant Cell (2014) 0.94
The pangenome of an agronomically important crop plant Brassica oleracea. Nat Commun (2016) 0.78
A TRIM insertion in the promoter of Ms2 causes male sterility in wheat. Nat Commun (2017) 0.77
Assessment of Web-Based Consumer Reviews as a Resource for Drug Performance. J Med Internet Res (2015) 0.75
Australian vegetated coastal ecosystems as global hotspots for climate change mitigation. Nat Commun (2019) 0.75
Timing anthropogenic stressors to mitigate their impact on marine ecosystem resilience. Nat Commun (2017) 0.75
Belowground stressors and long-term seagrass declines in a historically degraded seagrass ecosystem after improved water quality. Sci Rep (2017) 0.75
The asparagus genome sheds light on the origin and evolution of a young Y chromosome. Nat Commun (2017) 0.75
Haplotype mapping uncovers unexplored variation in wild and domesticated soybean at the major protein locus cqProt-003. Theor Appl Genet (2022) 0.75
Identifying critical recruitment bottlenecks limiting seedling establishment in a degraded seagrass ecosystem. Sci Rep (2017) 0.75