Published in Funct Integr Genomics on July 05, 2016
Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods (2001) 414.27
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol (2011) 220.97
Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell (2008) 32.65
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature (2008) 26.78
Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet (2010) 15.70
The tomato genome sequence provides insights into fleshy fruit evolution. Nature (2012) 9.47
Genome sequence and analysis of the tuber crop potato. Nature (2011) 7.77
ROS1, a repressor of transcriptional gene silencing in Arabidopsis, encodes a DNA glycosylase/lyase. Cell (2002) 5.77
Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing. Curr Biol (2002) 5.47
A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening. Nat Genet (2006) 4.59
Pseudogenes as a paradigm of neutral evolution. Nature (1981) 4.33
The SRA methyl-cytosine-binding domain links DNA and histone methylation. Curr Biol (2007) 3.70
Epigenetic regulation of stress responses in plants. Curr Opin Plant Biol (2009) 3.46
The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin. Cell (2013) 3.27
Comprehensive analysis of silencing mutants reveals complex regulation of the Arabidopsis methylome. Cell (2013) 3.02
RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage. Genes Dev (2010) 2.90
Widespread dynamic DNA methylation in response to biotic stress. Proc Natl Acad Sci U S A (2012) 2.90
Conserved plant genes with similarity to mammalian de novo DNA methyltransferases. Proc Natl Acad Sci U S A (2000) 2.72
Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. PLoS One (2008) 2.69
Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening. Nat Biotechnol (2013) 2.43
Eukaryotic DNA methylation as an evolutionary device. Bioessays (1999) 2.20
Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species. Nat Genet (2014) 2.19
Dual binding of chromomethylase domains to H3K9me2-containing nucleosomes directs DNA methylation in plants. Cell (2012) 2.19
Non-CG methylation patterns shape the epigenetic landscape in Arabidopsis. Nat Struct Mol Biol (2013) 2.14
RNA cytosine methylation by Dnmt2 and NSun2 promotes tRNA stability and protein synthesis. Nat Struct Mol Biol (2012) 1.75
Abiotic-stress induces demethylation and transcriptional activation of a gene encoding a glycerophosphodiesterase-like protein in tobacco plants. Mol Genet Genomics (2007) 1.69
Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis. PLoS Genet (2008) 1.54
A COSII genetic map of the pepper genome provides a detailed picture of synteny with tomato and new insights into recent chromosome evolution in the genus Capsicum. Theor Appl Genet (2009) 1.52
Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1). Proc Natl Acad Sci U S A (2011) 1.52
Drought-induced site-specific DNA methylation and its association with drought tolerance in rice (Oryza sativa L.). J Exp Bot (2010) 1.45
Association between up-regulation of stress-responsive genes and hypomethylation of genomic DNA in tobacco plants. Mol Genet Genomics (2004) 1.38
Chromosomal evolution in the plant family Solanaceae. BMC Genomics (2010) 1.29
HDA6 directly interacts with DNA methyltransferase MET1 and maintains transposable element silencing in Arabidopsis. Plant Physiol (2011) 1.24
Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing. Plant J (2014) 1.22
The genome of the stress-tolerant wild tomato species Solanum pennellii. Nat Genet (2014) 1.21
Loss of DNA methylation affects the recombination landscape in Arabidopsis. Proc Natl Acad Sci U S A (2012) 1.20
Epigenetic mechanisms underlying genomic imprinting in plants. Annu Rev Plant Biol (2012) 1.20
ChromDB: the chromatin database. Nucleic Acids Res (2007) 1.15
Genetic interactions between DNA demethylation and methylation in Arabidopsis. Plant Physiol (2007) 1.13
Genome-wide analysis of auxin response factor (ARF) gene family from tomato and analysis of their role in flower and fruit development. Mol Genet Genomics (2011) 1.08
DNA demethylases target promoter transposable elements to positively regulate stress responsive genes in Arabidopsis. Genome Biol (2014) 1.03
Plant cytosine-5 DNA methyltransferases: structure, function, and molecular evolution. Genomics (2007) 1.03
Genomic distribution of H3K9me2 and DNA methylation in a maize genome. PLoS One (2014) 1.03
Tissue dependent variations of DNA methylation and endoreduplication levels during tomato fruit development and ripening. Planta (2008) 1.00
Genome-wide investigation and expression analysis suggest diverse roles of auxin-responsive GH3 genes during development and response to different stimuli in tomato (Solanum lycopersicum). Mol Genet Genomics (2012) 0.98
Integrated network analysis identifies fight-club nodes as a class of hubs encompassing key putative switch genes that induce major transcriptome reprogramming during grapevine development. Plant Cell (2014) 0.96
Divergent DNA methylation patterns associated with abiotic stress in Hevea brasiliensis. Mol Plant (2011) 0.96
A multiple stress-responsive gene ERD15 from Solanum pennellii confers stress tolerance in tobacco. Plant Cell Physiol (2011) 0.95
Salt tolerance in Solanum pennellii: antioxidant response and related QTL. BMC Plant Biol (2010) 0.94
Divergent DNA methylation patterns associated with gene expression in rice cultivars with contrasting drought and salinity stress response. Sci Rep (2015) 0.93
Rice cytosine DNA methyltransferases - gene expression profiling during reproductive development and abiotic stress. FEBS J (2009) 0.92
Chromatin remodeling in plant cell culture: patterns of DNA methylation and histone H3 and H4 acetylation vary during growth of asynchronous potato cell suspensions. Plant Physiol Biochem (2005) 0.92
Genetic evidence that DNA methyltransferase DRM2 has a direct catalytic role in RNA-directed DNA methylation in Arabidopsis thaliana. Genetics (2011) 0.90
Transcriptome analysis of rin mutant fruit and in silico analysis of promoters of differentially regulated genes provides insight into LeMADS-RIN-regulated ethylene-dependent as well as ethylene-independent aspects of ripening in tomato. Mol Genet Genomics (2012) 0.90
The Polycomb group protein MEDEA and the DNA methyltransferase MET1 interact to repress autonomous endosperm development in Arabidopsis. Plant J (2013) 0.89
A DEMETER-like DNA demethylase governs tomato fruit ripening. Proc Natl Acad Sci U S A (2015) 0.89
Comparison of the heat stress induced variations in DNA methylation between heat-tolerant and heat-sensitive rapeseed seedlings. Breed Sci (2014) 0.88
Requirement of CHROMOMETHYLASE3 for somatic inheritance of the spontaneous tomato epimutation Colourless non-ripening. Sci Rep (2015) 0.85
Dynamics and Reversibility of the DNA Methylation Landscape of Grapevine Plants (Vitis vinifera) Stressed by In Vitro Cultivation and Thermotherapy. PLoS One (2015) 0.81
Genome-wide identification of cytosine-5 DNA methyltransferases and demethylases in Solanum lycopersicum. Gene (2014) 0.81
Genomic survey, gene expression analysis and structural modeling suggest diverse roles of DNA methyltransferases in legumes. PLoS One (2014) 0.80
DNA methylation in diploid inbred lines of potatoes and its possible role in the regulation of heterosis. Theor Appl Genet (2010) 0.79
Bioinformatic analysis of epigenetic and microRNA mediated regulation of drought responsive genes in rice. PLoS One (2012) 0.79
Ripening behavior of wild tomato species. Plant Physiol (1981) 0.76
Growth response to ionic and osmotic stress of NaCl in salt-tolerant and salt-sensitive maize. J Integr Plant Biol (2010) 0.76