Published in Genom Data on June 20, 2016
The effect of extrinsic mortality on genome size evolution in prokaryotes. ISME J (2016) 0.75
The COG database: an updated version includes eukaryotes. BMC Bioinformatics (2003) 60.98
Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature (2004) 20.20
IMG: the Integrated Microbial Genomes database and comparative analysis system. Nucleic Acids Res (2012) 12.03
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation. Nature (2003) 8.53
Phages and the evolution of bacterial pathogens: from genomic rearrangements to lysogenic conversion. Microbiol Mol Biol Rev (2004) 7.93
A minimal gene set for cellular life derived by comparison of complete bacterial genomes. Proc Natl Acad Sci U S A (1996) 6.38
Bacterial competition: surviving and thriving in the microbial jungle. Nat Rev Microbiol (2010) 5.63
Genomes in flux: the evolution of archaeal and proteobacterial gene content. Genome Res (2002) 4.85
Trends between gene content and genome size in prokaryotic species with larger genomes. Proc Natl Acad Sci U S A (2004) 3.89
Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation. Nat Rev Genet (2008) 3.84
Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell. Genome Res (1999) 3.62
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome. Proc Natl Acad Sci U S A (2003) 3.55
Bacterial genomes as new gene homes: the genealogy of ORFans in E. coli. Genome Res (2004) 3.12
Bacteriophage control of bacterial virulence. Infect Immun (2002) 2.97
Accelerated evolution associated with genome reduction in a free-living prokaryote. Genome Biol (2005) 2.95
The biogeochemical cycles of trace metals in the oceans. Science (2003) 2.72
Phylogenetic analyses of cyanobacterial genomes: quantification of horizontal gene transfer events. Genome Res (2006) 2.46
Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches. FEMS Microbiol Rev (2011) 2.41
Microbial life under extreme energy limitation. Nat Rev Microbiol (2013) 2.37
Controlling gene expression in response to stress. Nat Rev Genet (2011) 2.33
Horizontal gene transfer among microbial genomes: new insights from complete genome analysis. Curr Opin Genet Dev (2000) 2.22
Recognizing the pseudogenes in bacterial genomes. Nucleic Acids Res (2005) 1.96
Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina. Proc Natl Acad Sci U S A (2008) 1.70
Genome fluctuations in cyanobacteria reflect evolutionary, developmental and adaptive traits. BMC Evol Biol (2011) 1.69
Genome evolution in cyanobacteria: the stable core and the variable shell. Proc Natl Acad Sci U S A (2008) 1.58
Plasmids foster diversification and adaptation of bacterial populations in soil. FEMS Microbiol Rev (2012) 1.35
The diversity of cyanobacterial metabolism: genome analysis of multiple phototrophic microorganisms. BMC Genomics (2012) 1.32
Genetic tools for cyanobacteria. Appl Microbiol Biotechnol (2002) 1.31
Horizontal gene transfer and bacterial diversity. J Biosci (2002) 1.19
Metabolic dependencies drive species co-occurrence in diverse microbial communities. Proc Natl Acad Sci U S A (2015) 1.19
Decoupling of genome size and sequence divergence in a symbiotic bacterium. J Bacteriol (2000) 1.18
Positive selection and compensatory adaptation interact to stabilize non-transmissible plasmids. Nat Commun (2014) 1.16
Mix and match in the tree of life. Science (1999) 1.05
Gene duplications in prokaryotes can be associated with environmental adaptation. BMC Genomics (2010) 1.01
Complete genome sequence of DSM 30083(T), the type strain (U5/41(T)) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy. Stand Genomic Sci (2014) 0.99
Comparative metagenomic and metatranscriptomic analyses of microbial communities in acid mine drainage. ISME J (2014) 0.98
Changes in gene expression during adaptation of Listeria monocytogenes to the soil environment. PLoS One (2011) 0.94
A trait based perspective on the biogeography of common and abundant marine bacterioplankton clades. Mar Genomics (2014) 0.88
An evaluation of minimal cellular functions to sustain a bacterial cell. BMC Syst Biol (2009) 0.87
A phylogenomics approach for selecting robust sets of phylogenetic markers. Nucleic Acids Res (2014) 0.86
A Model of Genome Size Evolution for Prokaryotes in Stable and Fluctuating Environments. Genome Biol Evol (2015) 0.86
The significance of translation regulation in the stress response. BMC Genomics (2013) 0.82
Comparative genomic and transcriptomic analyses reveal habitat differentiation and different transcriptional responses during pectin metabolism in Alishewanella species. Appl Environ Microbiol (2013) 0.82
Proteome-wide analysis of functional divergence in bacteria: exploring a host of ecological adaptations. PLoS One (2012) 0.78
The ecology of bacterial genes and the survival of the new. Int J Evol Biol (2012) 0.78
Whole genome phylogeny of Prochlorococcus marinus group of cyanobacteria: genome alignment and overlapping gene approach. Interdiscip Sci (2014) 0.76