Published in PLoS One on August 11, 2016
Burkholderia cepacia Complex Regulation of Virulence Gene Expression: A Review. Genes (Basel) (2017) 0.75
Class III histidine kinases: a recently accessorized kinase domain in putative modulators of type IV pili based motility. J Bacteriol (2017) 0.75
Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res (2008) 151.16
Bioconductor: open software development for computational biology and bioinformatics. Genome Biol (2004) 143.19
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol (2013) 112.81
Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics (2014) 44.23
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol (2014) 27.48
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data. Bioinformatics (2012) 26.90
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res (2012) 19.48
Fast and SNP-tolerant detection of complex variants and splicing in short reads. Bioinformatics (2010) 17.53
GenBank. Nucleic Acids Res (2008) 13.29
Software for computing and annotating genomic ranges. PLoS Comput Biol (2013) 8.20
Rfam 11.0: 10 years of RNA families. Nucleic Acids Res (2012) 6.14
The multifarious, multireplicon Burkholderia cepacia complex. Nat Rev Microbiol (2005) 5.38
Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes. Nat Genet (2011) 4.81
A more sensitive plate assay for detection of protease production by Pseudomanas aeruginosa. J Clin Microbiol (1979) 4.30
The changing microbial epidemiology in cystic fibrosis. Clin Microbiol Rev (2010) 4.22
Burkholderia cenocepacia and Burkholderia multivorans: influence on survival in cystic fibrosis. Thorax (2004) 3.25
BLAST: a more efficient report with usability improvements. Nucleic Acids Res (2013) 2.77
The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients. J Bacteriol (2008) 2.71
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data. Bioinformatics (2012) 2.63
Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov. Int J Syst Evol Microbiol (2009) 2.61
Genetic variation of a bacterial pathogen within individuals with cystic fibrosis provides a record of selective pressures. Nat Genet (2013) 2.59
Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing. Proc Natl Acad Sci U S A (2012) 2.47
Burkholderia cenocepacia in cystic fibrosis: epidemiology and molecular mechanisms of virulence. Clin Microbiol Infect (2010) 2.41
The Burkholderia Genome Database: facilitating flexible queries and comparative analyses. Bioinformatics (2008) 1.93
Role of ornibactin biosynthesis in the virulence of Burkholderia cepacia: characterization of pvdA, the gene encoding L-ornithine N(5)-oxygenase. Infect Immun (1999) 1.70
The high amino-acid content of sputum from cystic fibrosis patients promotes growth of auxotrophic Pseudomonas aeruginosa. J Med Microbiol (1996) 1.52
Solving the problem of comparing whole bacterial genomes across different sequencing platforms. PLoS One (2014) 1.47
Impact of Burkholderia dolosa on lung function and survival in cystic fibrosis. Am J Respir Crit Care Med (2005) 1.45
Bacterial hypermutation in cystic fibrosis, not only for antibiotic resistance. Clin Microbiol Infect (2010) 1.38
Molecular analysis of Burkholderia cepacia complex isolates from a Portuguese cystic fibrosis center: a 7-year study. J Clin Microbiol (2003) 1.37
Identification of a novel virulence factor in Burkholderia cenocepacia H111 required for efficient slow killing of Caenorhabditis elegans. Infect Immun (2004) 1.30
Pyrrolnitrin from Burkholderia cepacia: antibiotic activity against fungi and novel activities against streptomycetes. J Appl Microbiol (1998) 1.28
Multilocus sequence typing breathes life into a microbial metagenome. PLoS One (2006) 1.23
Burkholderia cenocepacia ZmpB is a broad-specificity zinc metalloprotease involved in virulence. Infect Immun (2006) 1.22
Essential genome of Pseudomonas aeruginosa in cystic fibrosis sputum. Proc Natl Acad Sci U S A (2015) 1.16
Auxotrophy of Burkholderia (Pseudomonas) cepacia from cystic fibrosis patients. J Clin Microbiol (1995) 1.14
Genomic expression analysis reveals strategies of Burkholderia cenocepacia to adapt to cystic fibrosis patients' airways and antimicrobial therapy. PLoS One (2011) 1.09
Reciprocal regulation by the CepIR and CciIR quorum sensing systems in Burkholderia cenocepacia. BMC Genomics (2009) 1.08
Production of the antifungal compound pyrrolnitrin is quorum sensing-regulated in members of the Burkholderia cepacia complex. Environ Microbiol (2009) 1.05
The unexpected discovery of a novel low-oxygen-activated locus for the anoxic persistence of Burkholderia cenocepacia. ISME J (2013) 1.05
Pseudomonas aeruginosa Diversification during Infection Development in Cystic Fibrosis Lungs-A Review. Pathogens (2014) 1.05
Occidiofungin, a unique antifungal glycopeptide produced by a strain of Burkholderia contaminans. Biochemistry (2009) 1.01
Increase in isolation of Burkholderia contaminans from Spanish patients with cystic fibrosis. Clin Microbiol Infect (2014) 1.01
Incidence of Burkholderia contaminans at a cystic fibrosis centre with an unusually high representation of Burkholderia cepacia during 15 years of epidemiological surveillance. J Med Microbiol (2015) 0.99
Mutators in cystic fibrosis chronic lung infection: Prevalence, mechanisms, and consequences for antimicrobial therapy. Int J Med Microbiol (2010) 0.97
Structural basis for mannose recognition by a lectin from opportunistic bacteria Burkholderia cenocepacia. Biochem J (2008) 0.97
Identifying the genetic basis of ecologically and biotechnologically useful functions of the bacterium Burkholderia vietnamiensis. Environ Microbiol (2007) 0.95
Biosynthesis of an antifungal oligopeptide in Burkholderia contaminans strain MS14. Biochem Biophys Res Commun (2009) 0.93
Genetic and biochemical map for the biosynthesis of occidiofungin, an antifungal produced by Burkholderia contaminans strain MS14. Appl Environ Microbiol (2011) 0.93
Swimming motility in a longitudinal collection of clinical isolates of Burkholderia cepacia complex bacteria from people with cystic fibrosis. PLoS One (2014) 0.92
AmbR1 is a key transcriptional regulator for production of antifungal activity of Burkholderia contaminans strain MS14. FEMS Microbiol Lett (2009) 0.91
Genetic diversity of Burkholderia contaminans isolates from cystic fibrosis patients in Argentina. J Clin Microbiol (2012) 0.91
Distribution and expression of the ZmpA metalloprotease in the Burkholderia cepacia complex. J Bacteriol (2005) 0.90
Functional quorum sensing systems are maintained during chronic Burkholderia cepacia complex infections in patients with cystic fibrosis. J Infect Dis (2010) 0.90
Burkholderia cenocepacia BC2L-C is a super lectin with dual specificity and proinflammatory activity. PLoS Pathog (2011) 0.89
The Rate and Molecular Spectrum of Spontaneous Mutations in the GC-Rich Multichromosome Genome of Burkholderia cenocepacia. Genetics (2015) 0.87
The Streptomyces leeuwenhoekii genome: de novo sequencing and assembly in single contigs of the chromosome, circular plasmid pSLE1 and linear plasmid pSLE2. BMC Genomics (2015) 0.87
'Cepacia syndrome' with Burkholderia multivorans, 9 years after initial colonization. J Cyst Fibros (2004) 0.87
Prevalence of indeterminate genetic species of Burkholderia cepacia complex in a cystic fibrosis center in Argentina. J Clin Microbiol (2008) 0.87
Draft Genome Sequences of Burkholderia contaminans, a Burkholderia cepacia Complex Species That Is Increasingly Recovered from Cystic Fibrosis Patients. Genome Announc (2015) 0.87
A Burkholderia cepacia complex non-ribosomal peptide-synthesized toxin is hemolytic and required for full virulence. Virulence (2012) 0.85
Hypermutation in Burkholderia cepacia complex is mediated by DNA mismatch repair inactivation and is highly prevalent in cystic fibrosis chronic respiratory infection. Int J Med Microbiol (2014) 0.84
Structural basis of the affinity for oligomannosides and analogs displayed by BC2L-A, a Burkholderia cenocepacia soluble lectin. Glycobiology (2009) 0.84
Identification of quorum sensing-controlled genes in Burkholderia ambifaria. Microbiologyopen (2013) 0.82
Quorum sensing systems influence Burkholderia cenocepacia virulence. Future Microbiol (2012) 0.82
Burkholdines from Burkholderia ambifaria: antifungal agents and possible virulence factors. J Nat Prod (2012) 0.81
Gene expression profiling of Burkholderia cenocepacia at the time of cepacia syndrome: loss of motility as a marker of poor prognosis? J Clin Microbiol (2015) 0.78
The Burkholderia contaminans MS14 ocfC gene encodes a xylosyltransferase for production of the antifungal occidiofungin. Appl Environ Microbiol (2013) 0.77
Spontaneous mutation rates come into focus in Escherichia coli. DNA Repair (Amst) (2014) 0.76
Draft Genome Sequences of Burkholderia contaminans, a Burkholderia cepacia Complex Species That Is Increasingly Recovered from Cystic Fibrosis Patients. Genome Announc (2015) 0.87
Gene expression profiling of Burkholderia cenocepacia at the time of cepacia syndrome: loss of motility as a marker of poor prognosis? J Clin Microbiol (2015) 0.78
What matters in chronic Burkholderia cenocepacia infection in cystic fibrosis: Insights from comparative genomics. PLoS Pathog (2017) 0.75