Altered Transcription and Neofunctionalization of Duplicated Genes Rescue the Harmful Effects of a Chimeric Gene in Brassica napus.

PubWeight™: 0.75‹?›

🔗 View Article (PMID 27559024)

Published in Plant Cell on August 24, 2016

Authors

Shengqian Xia1, Zhixin Wang1, Haiyan Zhang1, Kaining Hu1, Zhiqiang Zhang2, Maomao Qin1, Xiaoling Dun3, Bin Yi4, Jing Wen5, Chaozhi Ma2, Jinxiong Shen2, Tingdong Fu2, Jinxing Tu6

Author Affiliations

1: Huazhong Agricultural University CITY: Wuhan STATE: HuBei China [CN].
2: National Key Laboratory of Crop Genetic Improvement, National Center of Rapeseed Improvement, Huazhong Agricultural University CITY: Wuhan China [CN].
3: China Academy of Agricultural Science CITY: Wuhan STATE: HuBei China [CN].
4: National Key Laboratory of Crop Genetic Improvement, National Center of Rapeseed Improvement, Huazhong Agricultural University CITY: Wuhan STATE: Hubei China [CN].
5: College of plant science and technology, Huazhong Agricultural University CITY: wuahn China [CN].
6: Huazhong Agricultural University National Key Laboratory of Crop Genetic Improvement, National Center of Rapeseed Improvement, Huazhong Agricultural University CITY: Wuhan STATE: Hu POSTAL_CODE: 430070 China [CN] tujx@mail.hzau.edu.cn.

Articles cited by this

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol (2013) 112.81

Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J (1998) 97.93

A codon-based model of nucleotide substitution for protein-coding DNA sequences. Mol Biol Evol (1994) 19.91

Hsp90 as a capacitor for morphological evolution. Nature (1998) 13.60

Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis. Nat Protoc (2007) 13.15

Hsp90 as a capacitor of phenotypic variation. Nature (2002) 8.90

The genome of the mesopolyploid crop species Brassica rapa. Nat Genet (2011) 8.23

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic Acids Res (2011) 8.18

Cyclophilin A retrotransposition into TRIM5 explains owl monkey resistance to HIV-1. Nature (2004) 7.10

Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae). Mol Biol Evol (2000) 6.61

Evidence for an epigenetic mechanism by which Hsp90 acts as a capacitor for morphological evolution. Nat Genet (2002) 5.37

Retroposed new genes out of the X in Drosophila. Genome Res (2002) 4.46

Natural selection and the origin of jingwei, a chimeric processed functional gene in Drosophila. Science (1993) 4.43

Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages. J Mol Evol (1999) 4.37

Rapid, transient expression of fluorescent fusion proteins in tobacco plants and generation of stably transformed plants. Nat Protoc (2006) 4.20

Chromosome triplication found across the tribe Brassiceae. Genome Res (2005) 3.92

The ABC's of comparative genomics in the Brassicaceae: building blocks of crucifer genomes. Trends Plant Sci (2006) 3.80

Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science (2014) 3.74

An expressed fgf4 retrogene is associated with breed-defining chondrodysplasia in domestic dogs. Science (2009) 3.29

Cryptic variation in morphological evolution: HSP90 as a capacitor for loss of eyes in cavefish. Science (2013) 3.15

Prp8 protein: at the heart of the spliceosome. RNA (2005) 2.89

Hsp90 and environmental stress transform the adaptive value of natural genetic variation. Science (2010) 2.68

Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species. Proc Natl Acad Sci U S A (2006) 2.68

The rice tapetum degeneration retardation gene is required for tapetum degradation and anther development. Plant Cell (2006) 2.62

Apoplastic polyesters in Arabidopsis surface tissues--a typical suberin and a particular cutin. Phytochemistry (2005) 2.51

Evolution of human-specific neural SRGAP2 genes by incomplete segmental duplication. Cell (2012) 2.43

The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes. Nat Commun (2014) 2.43

New genes in Drosophila quickly become essential. Science (2010) 2.39

Trafficking of phosphatidylinositol 3-phosphate from the trans-Golgi network to the lumen of the central vacuole in plant cells. Plant Cell (2001) 2.28

High rate of chimeric gene origination by retroposition in plant genomes. Plant Cell (2006) 2.08

Comparative genome analyses of Arabidopsis spp.: inferring chromosomal rearrangement events in the evolutionary history of A. thaliana. Genome Res (2005) 2.01

Origin of sphinx, a young chimeric RNA gene in Drosophila melanogaster. Proc Natl Acad Sci U S A (2002) 1.92

Analysis of the aliphatic monomer composition of polyesters associated with Arabidopsis epidermis: occurrence of octadeca-cis-6, cis-9-diene-1,18-dioate as the major component. Plant J (2004) 1.85

Genome evolution among cruciferous plants: a lecture from the comparison of the genetic maps of three diploid species--Capsella rubella, Arabidopsis lyrata subsp. petraea, and A. thaliana. Am J Bot (2005) 1.81

Cytochrome P450 family member CYP704B2 catalyzes the {omega}-hydroxylation of fatty acids and is required for anther cutin biosynthesis and pollen exine formation in rice. Plant Cell (2010) 1.74

A novel fatty Acyl-CoA Synthetase is required for pollen development and sporopollenin biosynthesis in Arabidopsis. Plant Cell (2009) 1.70

Genes and transposons are differentially methylated in plants, but not in mammals. Genome Res (2003) 1.66

Tic40, a membrane-anchored co-chaperone homolog in the chloroplast protein translocon. EMBO J (2003) 1.56

Evolution of a novel phenolic pathway for pollen development. Science (2009) 1.50

New genes as drivers of phenotypic evolution. Nat Rev Genet (2013) 1.49

Wax-deficient anther1 is involved in cuticle and wax production in rice anther walls and is required for pollen development. Plant Cell (2006) 1.48

Emergence of a new gene from an intergenic region. Curr Biol (2009) 1.47

Parallel evolution of chimeric fusion genes. Proc Natl Acad Sci U S A (2005) 1.45

An improved method for plant BAC library construction. Methods Mol Biol (2003) 1.43

Stromal Hsp70 is important for protein translocation into pea and Arabidopsis chloroplasts. Plant Cell (2010) 1.41

SDG714, a histone H3K9 methyltransferase, is involved in Tos17 DNA methylation and transposition in rice. Plant Cell (2007) 1.39

Evolution and genetic differentiation among relatives of Arabidopsis thaliana. Proc Natl Acad Sci U S A (2007) 1.36

A young Drosophila duplicate gene plays essential roles in spermatogenesis by regulating several Y-linked male fertility genes. PLoS Genet (2010) 1.35

Defective pollen wall is required for anther and microspore development in rice and encodes a fatty acyl carrier protein reductase. Plant Cell (2011) 1.23

Use of a SPAD-502 meter to measure leaf chlorophyll concentration in Arabidopsis thaliana. Photosynth Res (2010) 1.22

Novel genes exhibit distinct patterns of function acquisition and network integration. Genome Biol (2010) 1.19

Male Sterile2 encodes a plastid-localized fatty acyl carrier protein reductase required for pollen exine development in Arabidopsis. Plant Physiol (2011) 1.19

Regulated interactions of mtHsp70 with Tim44 at the translocon in the mitochondrial inner membrane. Nat Struct Mol Biol (2004) 1.19

Stimulation of transit-peptide release and ATP hydrolysis by a cochaperone during protein import into chloroplasts. J Cell Biol (2006) 1.18

Formation and longevity of chimeric and duplicate genes in Drosophila melanogaster. Genetics (2008) 1.12

Two duplicate CYP704B1-homologous genes BnMs1 and BnMs2 are required for pollen exine formation and tapetal development in Brassica napus. Plant J (2010) 1.05

Functional similarity between the chloroplast translocon component, Tic40, and the human co-chaperone, Hsp70-interacting protein (Hip). J Biol Chem (2007) 1.04

Assembly of an evolutionarily new pathway for α-pyrone biosynthesis in Arabidopsis. Science (2012) 1.02

BnaC.Tic40, a plastid inner membrane translocon originating from Brassica oleracea, is essential for tapetal function and microspore development in Brassica napus. Plant J (2011) 0.96

Reshaping of global gene expression networks and sex-biased gene expression by integration of a young gene. EMBO J (2012) 0.94

Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method. Proc Natl Acad Sci U S A (2011) 0.91

A male sterility-associated cytotoxic protein ORF288 in Brassica juncea causes aborted pollen development. J Exp Bot (2011) 0.90

Universal endogenous gene controls for bisulphite conversion in analysis of plant DNA methylation. Plant Methods (2011) 0.89

The origin and evolution of new genes. Methods Mol Biol (2012) 0.87

Frequent recent origination of brain genes shaped the evolution of foraging behavior in Drosophila. Cell Rep (2012) 0.87

BnMs3 is required for tapetal differentiation and degradation, microspore separation, and pollen-wall biosynthesis in Brassica napus. J Exp Bot (2011) 0.86

A separation defect of tapetum cells and microspore mother cells results in male sterility in Brassica napus: the role of abscisic acid in early anther development. Plant Mol Biol (2009) 0.85

Mapping of BnMs4 and BnRf to a common microsyntenic region of Arabidopsis thaliana chromosome 3 using intron polymorphism markers. Theor Appl Genet (2012) 0.83

Fine mapping of the recessive genic male-sterile gene (Bnms1) in Brassica napus L. Theor Appl Genet (2006) 0.83

Molecular cloning and mRNA expression profile of sucrose transporter gene BnSUT1C from Brassica napus L. Indian J Exp Biol (2013) 0.79

Neofunctionalization of duplicated Tic40 genes caused a gain-of-function variation related to male fertility in Brassica oleracea lineages. Plant Physiol (2014) 0.78

Rapid cloning of genes and promoters for functional analyses. Methods Mol Biol (2014) 0.76

[Evolutionary fate and expression patterns of chimeric new genes in Drosophila melanogaster]. Dongwuxue Yanjiu (2011) 0.76