Published in Microb Ecol Health Dis on October 18, 2016
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet (2000) 336.52
MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res (2004) 168.89
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res (1997) 142.55
RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res (2007) 85.81
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci U S A (1990) 50.63
Artemis: sequence visualization and annotation. Bioinformatics (2000) 46.68
Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics (2010) 42.80
FastTree 2--approximately maximum-likelihood trees for large alignments. PLoS One (2010) 26.15
Ongoing revolution in bacteriology: routine identification of bacteria by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. Clin Infect Dis (2009) 16.51
A combined transmembrane topology and signal peptide prediction method. J Mol Biol (2004) 15.77
The rebirth of culture in microbiology through the example of culturomics to study human gut microbiota. Clin Microbiol Rev (2015) 11.49
Microbial culturomics: paradigm shift in the human gut microbiome study. Clin Microbiol Infect (2012) 7.97
Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiol Rev (1996) 6.97
Genome sequence-based species delimitation with confidence intervals and improved distance functions. BMC Bioinformatics (2013) 6.62
The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res (2011) 5.79
DNAPlotter: circular and linear interactive genome visualization. Bioinformatics (2008) 5.49
Proteinortho: detection of (co-)orthologs in large-scale analysis. BMC Bioinformatics (2011) 4.15
GenBank. Nucleic Acids Res (2014) 3.71
A polyphasic strategy incorporating genomic data for the taxonomic description of novel bacterial species. Int J Syst Evol Microbiol (2014) 2.45
FIGENIX: intelligent automation of genomic annotation: expertise integration in a new software platform. BMC Bioinformatics (2005) 1.97
When should a DDH experiment be mandatory in microbial taxonomy? Arch Microbiol (2013) 1.56
Taxonomic use of DNA G+C content and DNA-DNA hybridization in the genomic age. Int J Syst Evol Microbiol (2014) 1.37
Advantages and limitations of genomics in prokaryotic taxonomy. Clin Microbiol Infect (2013) 1.17
Genome sequence and description of Anaerosalibacter massiliensis sp. nov. New Microbes New Infect (2016) 1.05
Gracilibacillus gen. nov., with description of Gracilibacillus halotolerans gen. nov., sp. nov.; transfer of Bacillus dipsosauri to Gracilibacillus dipsosauri comb. nov., and Bacillus salexigens to the genus Salibacillus gen. nov., as Salibacillus salexigens comb. nov. Int J Syst Bacteriol (1999) 0.92
Unusual fungal niches. Mycologia (2011) 0.88
Gracilibacillus alcaliphilus sp. nov., a facultative alkaliphile isolated from indigo fermentation liquor for dyeing. Int J Syst Evol Microbiol (2014) 0.84
Gracilibacillus boraciitolerans sp. nov., a highly boron-tolerant and moderately halotolerant bacterium isolated from soil. Int J Syst Evol Microbiol (2007) 0.78
Gracilibacillus orientalis sp. nov., a novel moderately halophilic bacterium isolated from a salt lake in Inner Mongolia, China. Int J Syst Evol Microbiol (2006) 0.77
Gracilibacillus thailandensis sp. nov., from fermented fish (pla-ra). Int J Syst Evol Microbiol (2009) 0.77
Gracilibacillus halophilus sp. nov., a moderately halophilic bacterium isolated from saline soil. Int J Syst Evol Microbiol (2008) 0.77
Gracilibacillus lacisalsi sp. nov., a halophilic Gram-positive bacterium from a salt lake in China. Int J Syst Evol Microbiol (2008) 0.77
Garicola koreensis gen. nov., sp. nov., isolated from saeu-jeot, traditional Korean fermented shrimp. Int J Syst Evol Microbiol (2015) 0.77
Gracilibacillus kekensis sp. nov., a moderate halophile isolated from Keke Salt Lake. Int J Syst Evol Microbiol (2011) 0.77
Bacillus oryzaecorticis sp. nov., a moderately halophilic bacterium isolated from rice husks. Int J Syst Evol Microbiol (2014) 0.76
Gracilibacillus saliphilus sp. nov., a moderately halophilic bacterium isolated from a salt lake. Int J Syst Evol Microbiol (2009) 0.76
Gracilibacillus ureilyticus sp. nov., a halotolerant bacterium from a saline-alkaline soil. Int J Syst Evol Microbiol (2009) 0.76