Published in J Clin Microbiol on December 14, 2016
Whole-Genome Sequencing for National Surveillance of Shigella flexneri. Front Microbiol (2017) 0.75
Accurate differentiation of Escherichia coli and Shigella serogroups: challenges and strategies. New Microbes New Infect (2017) 0.75
The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res (2010) 97.51
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol (2012) 62.36
Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics (2010) 52.01
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics (2014) 28.04
Serotype-converting bacteriophages and O-antigen modification in Shigella flexneri. Trends Microbiol (2000) 2.47
Structure and genetics of Shigella O antigens. FEMS Microbiol Rev (2008) 2.11
Revisiting the molecular evolutionary history of Shigella spp. J Mol Evol (2006) 1.54
Intensified shigellosis epidemic associated with sexual transmission in men who have sex with men--Shigella flexneri and S. sonnei in England, 2004 to end of February 2015. Euro Surveill (2015) 1.22
Differentiation between Shigella, enteroinvasive Escherichia coli (EIEC) and noninvasive Escherichia coli. Eur J Clin Microbiol Infect Dis (2011) 1.19
Whole-genome sequencing for national surveillance of Shiga toxin-producing Escherichia coli O157. Clin Infect Dis (2015) 1.15
Defining the phylogenomics of Shigella species: a pathway to diagnostics. J Clin Microbiol (2015) 1.12
Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri. Elife (2015) 1.06
Identification of Salmonella for public health surveillance using whole genome sequencing. PeerJ (2016) 0.99
Evaluation of Molecular Methods for Serotyping Shigella flexneri. J Clin Microbiol (2016) 0.88
Concerning the classification of Shigella flexneri 6 bacilli. Arch Immunol Ther Exp (Warsz) (1967) 0.85
Whole Genome Sequencing for Public Health Surveillance of Shiga Toxin-Producing Escherichia coli Other than Serogroup O157. Front Microbiol (2016) 0.85
MOST: a modified MLST typing tool based on short read sequencing. PeerJ (2016) 0.84
Phylogenetic Analyses of Shigella and Enteroinvasive Escherichia coli for the Identification of Molecular Epidemiological Markers: Whole-Genome Comparative Analysis Does Not Support Distinct Genera Designation. Front Microbiol (2016) 0.81
Use of whole-genome sequencing for the public health surveillance of Shigella sonnei in England and Wales, 2015. J Med Microbiol (2016) 0.80
Investigating the Relatedness of Enteroinvasive Escherichia coli to Other E. coli and Shigella Isolates by Using Comparative Genomics. Infect Immun (2016) 0.79