Environmental and genetic effects on tomato seed metabolic balance and its association with germination vigor.

PubWeight™: 0.75‹?›

🔗 View Article (PMID 27993127)

Published in BMC Genomics on December 19, 2016

Authors

Leah Rosental1, Adi Perelman2, Noa Nevo1, David Toubiana1, Talya Samani1, Albert Batushansky1, Noga Sikron1, Yehoshua Saranga2, Aaron Fait3

Author Affiliations

1: The French Associates Institute for Agriculture and Biotechnology of Dryland, the Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, Midreshet Ben Gurion, 84990, Israel.
2: Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, The Hebrew University of Jerusalem, Rehovot, 76100, Israel.
3: The French Associates Institute for Agriculture and Biotechnology of Dryland, the Jacob Blaustein Institutes for Desert Research, Ben-Gurion University of the Negev, Sede Boqer Campus, Midreshet Ben Gurion, 84990, Israel. fait@bgu.ac.il.

Articles cited by this

TM4: a free, open-source system for microarray data management and analysis. Biotechniques (2003) 38.02

fw2.2: a quantitative trait locus key to the evolution of tomato fruit size. Science (2000) 7.91

Seed Germination and Dormancy. Plant Cell (1997) 7.79

Seed dormancy and the control of germination. New Phytol (2006) 7.69

Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology. Brief Bioinform (2009) 5.44

An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL. Genetics (1995) 5.32

Mass spectrometry-based metabolomics. Mass Spectrom Rev (2006) 5.23

Leptin-specific patterns of gene expression in white adipose tissue. Genes Dev (2000) 4.57

Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nat Biotechnol (2006) 4.47

pcaMethods--a bioconductor package providing PCA methods for incomplete data. Bioinformatics (2007) 3.84

Epigenetic regulation of stress responses in plants. Curr Opin Plant Biol (2009) 3.46

Natural allelic variation at seed size loci in relation to other life history traits of Arabidopsis thaliana. Proc Natl Acad Sci U S A (1999) 3.20

A Bayesian missing value estimation method for gene expression profile data. Bioinformatics (2003) 3.19

Variation in germination and amino Acid leakage of seeds with temperature related to membrane phase change. Plant Physiol (1976) 3.13

Genome-wide profiling of stored mRNA in Arabidopsis thaliana seed germination: epigenetic and genetic regulation of transcription in seed. Plant J (2005) 2.97

A water relations analysis of seed germination rates. Plant Physiol (1990) 2.69

Molecular physiology of legume seed development. Annu Rev Plant Biol (2005) 2.46

Zooming in on a quantitative trait for tomato yield using interspecific introgressions. Science (2004) 2.37

Proteomic analysis of arabidopsis seed germination and priming. Plant Physiol (2001) 2.24

Completing the cycle: maternal effects as the missing link in plant life histories. Philos Trans R Soc Lond B Biol Sci (2009) 2.24

Review: on the analysis and interpretation of correlations in metabolomic data. Brief Bioinform (2006) 2.15

Analysis of natural allelic variation of Arabidopsis seed germination and seed longevity traits between the accessions Landsberg erecta and Shakdara, using a new recombinant inbred line population. Plant Physiol (2004) 2.10

Arabidopsis seed development and germination is associated with temporally distinct metabolic switches. Plant Physiol (2006) 2.01

Seed germination and vigor. Annu Rev Plant Biol (2011) 1.97

First off the mark: early seed germination. J Exp Bot (2011) 1.82

Mode of inheritance of primary metabolic traits in tomato. Plant Cell (2008) 1.56

An integrated view of quantitative trait variation using tomato interspecific introgression lines. Curr Opin Genet Dev (2007) 1.54

The N-end rule pathway promotes seed germination and establishment through removal of ABA sensitivity in Arabidopsis. Proc Natl Acad Sci U S A (2009) 1.44

Seed desiccation: a bridge between maturation and germination. Trends Plant Sci (2010) 1.43

Network analysis of enzyme activities and metabolite levels and their relationship to biomass in a large panel of Arabidopsis accessions. Plant Cell (2010) 1.41

S-adenosyl-L-methionine is an effector in the posttranscriptional autoregulation of the cystathionine gamma-synthase gene in Arabidopsis. Proc Natl Acad Sci U S A (2003) 1.30

The SnRK1A protein kinase plays a key role in sugar signaling during germination and seedling growth of rice. Plant Cell (2007) 1.26

Gene expression programs during Brassica oleracea seed maturation, osmopriming, and germination are indicators of progression of the germination process and the stress tolerance level. Plant Physiol (2004) 1.20

Importance of methionine biosynthesis for Arabidopsis seed germination and seedling growth. Physiol Plant (2002) 1.17

Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach. BMC Syst Biol (2011) 1.17

A seed high-lysine trait is negatively associated with the TCA cycle and slows down Arabidopsis seed germination. New Phytol (2010) 1.16

Natural variation in an ABC transporter gene associated with seed size evolution in tomato species. PLoS Genet (2009) 1.15

Expression of a GALACTINOL SYNTHASE gene in tomato seeds is up-regulated before maturation desiccation and again after imbibition whenever radicle protrusion is prevented. Plant Physiol (2003) 1.15

Deciphering transcriptional and metabolic networks associated with lysine metabolism during Arabidopsis seed development. Plant Physiol (2009) 1.15

Mapping salinity tolerance during Arabidopsis thaliana germination and seedling growth. PLoS One (2011) 1.10

Seed dormancy and germination-emerging mechanisms and new hypotheses. Front Plant Sci (2014) 1.08

Metabolic profiling of a mapping population exposes new insights in the regulation of seed metabolism and seed, fruit, and plant relations. PLoS Genet (2012) 1.06

Constructing the metabolic and regulatory pathways in germinating rice seeds through proteomic approach. Proteomics (2011) 1.04

Impact of genetics and environment on the metabolite composition of maize grain. J Agric Food Chem (2010) 1.04

Common QTL affect the rate of tomato seed germination under different stress and nonstress conditions. Int J Plant Genomics (2007) 1.03

Metabolic alterations in organic acids and gamma-aminobutyric acid in developing tomato (Solanum lycopersicum L.) fruits. Plant Cell Physiol (2010) 1.02

Natural variation in Arabidopsis thaliana revealed a genetic network controlling germination under salt stress. PLoS One (2010) 0.99

The catecholamine biosynthesis route in potato is affected by stress. Plant Physiol Biochem (2004) 0.98

Targeted enhancement of glutamate-to-γ-aminobutyrate conversion in Arabidopsis seeds affects carbon-nitrogen balance and storage reserves in a development-dependent manner. Plant Physiol (2011) 0.96

Metabolite profiling and network analysis reveal coordinated changes in grapevine water stress response. BMC Plant Biol (2013) 0.95

Correlation Network Analysis reveals a sequential reorganization of metabolic and transcriptional states during germination and gene-metabolite relationships in developing seedlings of Arabidopsis. BMC Syst Biol (2010) 0.95

Salt tolerance in Solanum pennellii: antioxidant response and related QTL. BMC Plant Biol (2010) 0.94

Abscisic acid and gibberellin differentially regulate expression of genes of the SNF1-related kinase complex in tomato seeds. Plant Physiol (2003) 0.94

The multifaceted role of aspartate-family amino acids in plant metabolism. J Exp Bot (2012) 0.91

Quantitative trait loci associated with lettuce seed germination under different temperature and light environments. Genome (2008) 0.90

Exploring the natural variation for seedling traits and their link with seed dimensions in tomato. PLoS One (2012) 0.88

Mechanisms of hormonal regulation of endosperm cap-specific gene expression in tomato seeds. Plant J (2012) 0.88

Deterioration mechanisms in air-dry pea seeds during early aging. Plant Physiol Biochem (2014) 0.88

Maternal temperature history activates Flowering Locus T in fruits to control progeny dormancy according to time of year. Proc Natl Acad Sci U S A (2014) 0.87

Interaction between parental environment and genotype affects plant and seed performance in Arabidopsis. J Exp Bot (2014) 0.87

Maternal environment affects the genetic basis of seed dormancy in Arabidopsis thaliana. Mol Ecol (2015) 0.87

Combined correlation-based network and mQTL analyses efficiently identified loci for branched-chain amino acid, serine to threonine, and proline metabolism in tomato seeds. Plant J (2014) 0.86

AtMKK1 and AtMPK6 are involved in abscisic acid and sugar signaling in Arabidopsis seed germination. Plant Mol Biol (2009) 0.86

Seed-specific expression of a feedback-insensitive form of CYSTATHIONINE-γ-SYNTHASE in Arabidopsis stimulates metabolic and transcriptomic responses associated with desiccation stress. Plant Physiol (2014) 0.86

Distribution of primary and specialized metabolites in Nigella sativa seeds, a spice with vast traditional and historical uses. Molecules (2012) 0.84

Ecotypic variability in the metabolic response of seeds to diurnal hydration-dehydration cycles and its relationship to seed vigor. Plant Cell Physiol (2011) 0.84

Antioxidants, free radicals, storage proteins, and proteolytic activities in wheat (Triticum durum) seeds during accelerated aging. J Agric Food Chem (2002) 0.83

Tobacco seeds expressing feedback-insensitive cystathionine gamma-synthase exhibit elevated content of methionine and altered primary metabolic profile. BMC Plant Biol (2013) 0.82

Current understanding of the factors regulating methionine content in vegetative tissues of higher plants. Amino Acids (2010) 0.82

The pivotal role of glutamate dehydrogenase (GDH) in the mobilization of N and C from storage material to asparagine in germinating seeds of yellow lupine. J Plant Physiol (2007) 0.81

Interference with oxidative phosphorylation enhances anoxic expression of rice alpha-amylase genes through abolishing sugar regulation. J Exp Bot (2010) 0.79

Effects of Parental Temperature and Nitrate on Seed Performance are Reflected by Partly Overlapping Genetic and Metabolic Pathways. Plant Cell Physiol (2016) 0.78

Articles by these authors

Network-guided GWAS improves identification of genes affecting free amino acids. Plant Physiol (2016) 0.75