Comparative Transcriptomic Study of Muscle Provides New Insights into the Growth Superiority of a Novel Grouper Hybrid.

PubWeight™: 0.75‹?›

🔗 View Article (PMID 28005961)

Published in PLoS One on December 22, 2016

Authors

Ying Sun1,2, Yu Huang2, Guojun Hu2, Xinhui Zhang2, Zhiqiang Ruan2, Xiaomeng Zhao2, Chuanyu Guo2, Zhujing Tang1, Xiaofeng Li2, Xinxin You2, Haoran Lin1, Yong Zhang1, Qiong Shi2,3

Author Affiliations

1: State Key Laboratory of Biocontrol, Institute of Aquatic Economic Animals and Guangdong Provincial Key Laboratory for Aquatic Economic Animals, School of Life Sciences, Sun Yat-Sen University, Guangzhou, China.
2: Shenzhen Key Lab of Marine Genomics, Guangdong Provincial Key Lab of Molecular Breeding in Marine Economic Animals, BGI, Shenzhen, China.
3: Center for Marine Research, School of Life Sciences and Oceanography, Shenzhen University, Shenzhen, China.

Articles cited by this

Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods (2001) 414.27

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol (2010) 75.21

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics (2005) 46.40

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler. Gigascience (2012) 20.89

GO::TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes. Bioinformatics (2004) 20.23

Calcium signaling. Cell (2007) 11.09

Regulation of contraction in striated muscle. Physiol Rev (2000) 9.40

Cardiac troponin T is essential in sarcomere assembly and cardiac contractility. Nat Genet (2002) 3.81

Fast/Glycolytic muscle fiber growth reduces fat mass and improves metabolic parameters in obese mice. Cell Metab (2008) 3.78

Structure and function of ryanodine receptors. Am J Physiol (1994) 3.77

Calcium ion in skeletal muscle: its crucial role for muscle function, plasticity, and disease. Physiol Rev (2000) 3.57

Phosphorylation of p70(S6k) correlates with increased skeletal muscle mass following resistance exercise. Am J Physiol (1999) 3.50

Structure of the calcium regulatory muscle protein troponin-C at 2.8 A resolution. Nature (1985) 2.65

The troponin complex and regulation of muscle contraction. FASEB J (1995) 2.64

Cancer metabolism: fatty acid oxidation in the limelight. Nat Rev Cancer (2013) 2.59

Muscle fibre growth in five different muscles in both sexes of mice. J Anat (1969) 2.36

Muscle inactivation of mTOR causes metabolic and dystrophin defects leading to severe myopathy. J Cell Biol (2009) 2.30

De novo analysis of transcriptome dynamics in the migratory locust during the development of phase traits. PLoS One (2010) 2.19

Glucose is essential for proliferation and the glycolytic enzyme induction that provokes a transition to glycolytic energy production. J Biol Chem (1994) 1.90

Evolution of glycolysis. Prog Biophys Mol Biol (1993) 1.82

Role of ryanodine receptors in the assembly of calcium release units in skeletal muscle. J Cell Biol (1998) 1.66

Structural basis for the activation of muscle contraction by troponin and tropomyosin. J Mol Biol (2009) 1.42

Troponin: structure, properties, and mechanism of functioning. Biochemistry (Mosc) (1999) 1.35

Selenoprotein N is required for ryanodine receptor calcium release channel activity in human and zebrafish muscle. Proc Natl Acad Sci U S A (2008) 1.34

Mechanical signal transduction in skeletal muscle growth and adaptation. J Appl Physiol (1985) (2005) 1.28

Carboxylation and decarboxylation reactions. Anaplerotic flux and removal of citrate cycle intermediates in skeletal muscle. J Biol Chem (1979) 1.24

Growth hormone promotes skeletal muscle cell fusion independent of insulin-like growth factor 1 up-regulation. Proc Natl Acad Sci U S A (2006) 1.12

Enhancement of muscle mitochondrial function by growth hormone. J Clin Endocrinol Metab (2007) 1.11

Regulation of pyruvate dehydrogenase activity and citric acid cycle intermediates during high cardiac power generation. J Physiol (2004) 1.10

The role of troponins in muscle contraction. IUBMB Life (2002) 1.10

Insights into modulation of calcium signaling by magnesium in calmodulin, troponin C and related EF-hand proteins. Biochim Biophys Acta (2011) 1.06

Troponin T is essential for sarcomere assembly in zebrafish skeletal muscle. J Cell Sci (2011) 0.97

Acute hibernation decreases myocardial pyruvate carboxylation and citrate release. Am J Physiol Heart Circ Physiol (2001) 0.95

Identification and analysis of common bean (Phaseolus vulgaris L.) transcriptomes by massively parallel pyrosequencing. BMC Plant Biol (2011) 0.95

Skeletal muscle metabolism in Duchenne muscular dystrophy (DMD): an in-vitro proton NMR spectroscopy study. Magn Reson Imaging (2003) 0.91

Fast-twitch sarcomeric and glycolytic enzyme protein loss in inclusion body myositis. Muscle Nerve (2009) 0.91

Acetylcholine and calcium signalling regulates muscle fibre formation in the zebrafish embryo. J Cell Sci (2005) 0.90

Phosphofructo-1-kinase deficiency leads to a severe cardiac and hematological disorder in addition to skeletal muscle glycogenosis. PLoS Genet (2009) 0.90

Fatty acid synthase plays a role in cancer metabolism beyond providing fatty acids for phospholipid synthesis or sustaining elevations in glycolytic activity. Exp Cell Res (2013) 0.90

The molecular basis of skeletal muscle weakness in a mouse model of inflammatory myopathy. Arthritis Rheum (2012) 0.89

S100 proteins modulate protein phosphatase 5 function: a link between CA2+ signal transduction and protein dephosphorylation. J Biol Chem (2012) 0.87

Activation of glycolysis by insulin with a sequential increase of the 6-phosphofructo-2-kinase activity, fructose-2,6-bisphosphate level and pyruvate kinase activity in cultured rat hepatocytes. Eur J Biochem (1985) 0.86

Fatal infantile form of muscle phosphofructokinase deficiency. Neurology (1986) 0.86

The selective control of glycolysis, gluconeogenesis and glycogenesis by temporal insulin patterns. Mol Syst Biol (2013) 0.85

Skeletal muscle fibre number in the rat from youth to adulthood. J Anat (1990) 0.85

Placental enzymes of glycolysis, gluconeogenesis and lipogenesis in the diabetic rat and in starvation. Comparison with maternal and foetal liver. Diabetologia (1978) 0.84

Regulation of skeletal muscle growth in fish by the growth hormone--insulin-like growth factor system. Gen Comp Endocrinol (2013) 0.84

Potential bias in GO::TermFinder. Brief Bioinform (2009) 0.83

Establishment of a new cell line from the heart of giant grouper, Epinephelus lanceolatus (Bloch), and its application in toxicology and virus susceptibility. J Fish Dis (2013) 0.82

Growth and development of muscle fibres in the rainbow trout (Salmo gairdneri). J Anat (1983) 0.81

Distinct troponin C isoform requirements in cardiac and skeletal muscle. Dev Dyn (2010) 0.81

Glycolysis supports embryonic muscle growth by promoting myoblast fusion. Proc Natl Acad Sci U S A (2013) 0.81

Reduced cytosolic acidification during exercise suggests defective glycolytic activity in skeletal muscle of patients with Becker muscular dystrophy. An in vivo 31P magnetic resonance spectroscopy study. Brain (1999) 0.81

Crystal structure of cardiac troponin C regulatory domain in complex with cadmium and deoxycholic acid reveals novel conformation. J Mol Biol (2011) 0.79

Calcium binding to skeletal muscle troponin C and the regulation of muscle contraction. Ciba Found Symp (1986) 0.77

Transcriptome analysis reveals the molecular mechanisms underlying growth superiority in a novel grouper hybrid (Epinephelus fuscogutatus♀ × E. lanceolatus♂). BMC Genet (2016) 0.76

Skeletal muscle disorders of glycogenolysis and glycolysis. Nat Rev Neurol (2016) 0.76

Utilization of troponin C as a model calcium-binding protein for mapping of the calmodulin-binding sites of caldesmon. Biochem J (1997) 0.76