Published in BMC Genomics on January 31, 2017
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol (2011) 220.97
Clustal W and Clustal X version 2.0. Bioinformatics (2007) 126.47
Circos: an information aesthetic for comparative genomics. Genome Res (2009) 40.02
Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science (2003) 39.19
The evolutionary fate and consequences of duplicate genes. Science (2000) 24.22
AP2 Gene Determines the Identity of Perianth Organs in Flowers of Arabidopsis thaliana. Plant Cell (1989) 13.60
HMMER web server: interactive sequence similarity searching. Nucleic Acids Res (2011) 13.00
A novel cis-acting element in an Arabidopsis gene is involved in responsiveness to drought, low-temperature, or high-salt stress. Plant Cell (1994) 10.01
Isolation of the Arabidopsis ABI3 gene by positional cloning. Plant Cell (1992) 8.36
Control of Arabidopsis flower and seed development by the homeotic gene APETALA2. Plant Cell (1994) 8.32
Ancestral polyploidy in seed plants and angiosperms. Nature (2011) 7.00
The Viviparous-1 developmental gene of maize encodes a novel transcriptional activator. Cell (1991) 6.84
Ethylene-inducible DNA binding proteins that interact with an ethylene-responsive element. Plant Cell (1995) 6.58
ARF1, a transcription factor that binds to auxin response elements. Science (1997) 5.64
DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression. Biochem Biophys Res Commun (2002) 5.14
Regulatory network of gene expression in the drought and cold stress responses. Curr Opin Plant Biol (2003) 5.07
Understanding mechanisms of novel gene expression in polyploids. Trends Genet (2003) 4.90
Arabidopsis ethylene-responsive element binding factors act as transcriptional activators or repressors of GCC box-mediated gene expression. Plant Cell (2000) 4.78
The AP2 domain of APETALA2 defines a large new family of DNA binding proteins in Arabidopsis. Proc Natl Acad Sci U S A (1997) 4.37
OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression. Plant J (2003) 4.09
Unraveling ancient hexaploidy through multiply-aligned angiosperm gene maps. Genome Res (2008) 4.02
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature (2012) 4.00
The draft genome of a diploid cotton Gossypium raimondii. Nat Genet (2012) 3.18
Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event. Proc Natl Acad Sci U S A (2009) 3.13
Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement. Nat Biotechnol (2015) 2.76
Regulation of disease resistance pathways by AP2/ERF transcription factors. Curr Opin Plant Biol (2004) 2.67
AP2/ERF family transcription factors in plant abiotic stress responses. Biochim Biophys Acta (2011) 2.62
A novel mode of DNA recognition by a beta-sheet revealed by the solution structure of the GCC-box binding domain in complex with DNA. EMBO J (1998) 2.48
The flowering world: a tale of duplications. Trends Plant Sci (2009) 2.38
Striking similarities in the genomic distribution of tandemly arrayed genes in Arabidopsis and rice. PLoS Comput Biol (2006) 2.24
Identification of Arabidopsis ethylene-responsive element binding factors with distinct induction kinetics after pathogen infection. Plant Physiol (2002) 2.23
Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli. Plant Physiol (2008) 2.14
Overexpression of the tobacco Tsi1 gene encoding an EREBP/AP2-type transcription factor enhances resistance against pathogen attack and osmotic stress in tobacco. Plant Cell (2001) 2.12
Identification of GPI anchor attachment signals by a Kohonen self-organizing map. Bioinformatics (2005) 1.99
Signal transduction during cold, salt, and drought stresses in plants. Mol Biol Rep (2011) 1.89
Glycosylphosphatidylinositol lipid anchoring of plant proteins. Sensitive prediction from sequence- and genome-wide studies for Arabidopsis and rice. Plant Physiol (2003) 1.72
A tomato (Solanum lycopersicum) APETALA2/ERF gene, SlAP2a, is a negative regulator of fruit ripening. Plant J (2010) 1.61
Characterization of GaWRKY1, a cotton transcription factor that regulates the sesquiterpene synthase gene (+)-delta-cadinene synthase-A. Plant Physiol (2004) 1.57
Arabidopsis ERF109 mediates cross-talk between jasmonic acid and auxin biosynthesis during lateral root formation. Nat Commun (2014) 1.56
An annotation update via cDNA sequence analysis and comprehensive profiling of developmental, hormonal or environmental responsiveness of the Arabidopsis AP2/EREBP transcription factor gene family. Plant Mol Biol (2005) 1.53
The fate of duplicated genes in a polyploid plant genome. Plant J (2012) 1.50
AP2/EREBP transcription factors are part of gene regulatory networks and integrate metabolic, hormonal and environmental signals in stress acclimation and retrograde signalling. Protoplasma (2010) 1.49
Arabidopsis RAV1 is down-regulated by brassinosteroid and may act as a negative regulator during plant development. Cell Res (2004) 1.46
Phylogeny, gene structures, and expression patterns of the ERF gene family in soybean (Glycine max L.). J Exp Bot (2008) 1.44
Jasmonate regulates the inducer of cbf expression-C-repeat binding factor/DRE binding factor1 cascade and freezing tolerance in Arabidopsis. Plant Cell (2013) 1.43
Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa. Biochem Biophys Res Commun (2008) 1.42
Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera. BMC Genomics (2010) 1.37
Gene structures, classification and expression models of the AP2/EREBP transcription factor family in rice. Plant Cell Physiol (2010) 1.37
Functions and application of the AP2/ERF transcription factor family in crop improvement. J Integr Plant Biol (2011) 1.36
Expression and functional roles of the pepper pathogen-induced transcription factor RAV1 in bacterial disease resistance, and drought and salt stress tolerance. Plant Mol Biol (2006) 1.33
Effects of reunited diverged regulatory hierarchies in allopolyploids and species hybrids. Trends Genet (2003) 1.32
An EREBP/AP2-type protein in Triticum aestivum was a DRE-binding transcription factor induced by cold, dehydration and ABA stress. Theor Appl Genet (2002) 1.30
Expression profiling and integrative analysis of the CESA/CSL superfamily in rice. BMC Plant Biol (2010) 1.27
The transcription factor MtSERF1 of the ERF subfamily identified by transcriptional profiling is required for somatic embryogenesis induced by auxin plus cytokinin in Medicago truncatula. Plant Physiol (2008) 1.21
AINTEGUMENTA and AINTEGUMENTA-LIKE6 act redundantly to regulate Arabidopsis floral growth and patterning. Plant Physiol (2009) 1.20
Identification, phylogeny, and transcript profiling of ERF family genes during development and abiotic stress treatments in tomato. Mol Genet Genomics (2010) 1.17
Homing into the origin of the AP2 DNA binding domain. Trends Plant Sci (2005) 1.16
Genome-wide identification and analysis of grape aldehyde dehydrogenase (ALDH) gene superfamily. PLoS One (2012) 1.09
Tomato RAV transcription factor is a pivotal modulator involved in the AP2/EREBP-mediated defense pathway. Plant Physiol (2011) 1.01
The CRF domain defines cytokinin response factor proteins in plants. BMC Plant Biol (2010) 0.98
The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element. Development (2012) 0.92
Effect of two conserved amino acid residues on DREB1A function. Biochemistry (Mosc) (2001) 0.89
RAV genes: regulation of floral induction and beyond. Ann Bot (2014) 0.89
Genome-Wide Analysis of the AP2/ERF Superfamily Genes and their Responses to Abiotic Stress in Medicago truncatula. Front Plant Sci (2016) 0.87
Genome-wide analysis and expression profiling of the ERF transcription factor family in potato (Solanum tuberosum L.). Mol Biotechnol (2015) 0.85
Overexpression of FTL1/DDF1, an AP2 transcription factor, enhances tolerance to cold, drought, and heat stresses in Arabidopsis thaliana. Plant Sci (2011) 0.85
Genome-Wide Analysis of the AP2/ERF Gene Family in Physic Nut and Overexpression of the JcERF011 Gene in Rice Increased Its Sensitivity to Salinity Stress. PLoS One (2016) 0.82
Expansion and stress responses of AP2/EREBP superfamily in Brachypodium Distachyon. Sci Rep (2016) 0.78
Overexpression of a cotton gene that encodes a putative transcription factor of AP2/EREBP family in Arabidopsis affects growth and development of transgenic plants. PLoS One (2013) 0.77