Published in PLoS One on February 16, 2017
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res (1997) 665.31
Basic local alignment search tool. J Mol Biol (1990) 659.07
NIH Image to ImageJ: 25 years of image analysis. Nat Methods (2012) 84.41
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol (2001) 66.87
Improved microbial gene identification with GLIMMER. Nucleic Acids Res (1999) 51.34
Artemis: sequence visualization and annotation. Bioinformatics (2000) 46.68
Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics (2010) 42.80
SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods (2011) 33.90
The Pfam protein families database. Nucleic Acids Res (2011) 33.46
MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res (2009) 23.27
Protein homology detection by HMM-HMM comparison. Bioinformatics (2004) 21.92
The HHpred interactive server for protein homology detection and structure prediction. Nucleic Acids Res (2005) 21.68
The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res (2005) 19.81
A method for the quantitative recovery of protein in dilute solution in the presence of detergents and lipids. Anal Biochem (1984) 19.70
CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res (2010) 19.07
InterProScan: protein domains identifier. Nucleic Acids Res (2005) 18.82
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences. Nucleic Acids Res (2004) 16.73
An increasing threat in hospitals: multidrug-resistant Acinetobacter baumannii. Nat Rev Microbiol (2007) 10.18
The Vienna RNA websuite. Nucleic Acids Res (2008) 9.02
Heuristic approach to deriving models for gene finding. Nucleic Acids Res (1999) 8.39
Global challenge of multidrug-resistant Acinetobacter baumannii. Antimicrob Agents Chemother (2007) 7.84
Bacteriophage resistance mechanisms. Nat Rev Microbiol (2010) 7.38
Open software for biologists: from famine to feast. Nat Biotechnol (2006) 7.07
The focusing positions of polypeptides in immobilized pH gradients can be predicted from their amino acid sequences. Electrophoresis (1993) 4.64
Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake. Genome Biol (2007) 4.27
Colistin resistance in Acinetobacter baumannii is mediated by complete loss of lipopolysaccharide production. Antimicrob Agents Chemother (2010) 3.03
Conserved translational frameshift in dsDNA bacteriophage tail assembly genes. Mol Cell (2004) 2.99
Survival of Acinetobacter baumannii on dry surfaces. J Clin Microbiol (1997) 2.91
Determining DNA packaging strategy by analysis of the termini of the chromosomes in tailed-bacteriophage virions. Methods Mol Biol (2009) 2.71
Colistin resistance of Acinetobacter baumannii: clinical reports, mechanisms and antimicrobial strategies. J Antimicrob Chemother (2012) 2.49
Comparative genomic analysis of 18 Pseudomonas aeruginosa bacteriophages. J Bacteriol (2006) 2.18
Complete nucleotide sequence, molecular analysis and genome structure of bacteriophage A118 of Listeria monocytogenes: implications for phage evolution. Mol Microbiol (2000) 2.10
Bacteriophage genomics. Curr Opin Microbiol (2008) 2.06
Comparing thousands of circular genomes using the CGView Comparison Tool. BMC Genomics (2012) 1.95
Comparative genomics and evolution of the tailed-bacteriophages. Curr Opin Microbiol (2005) 1.92
Understanding the enormous diversity of bacteriophages: the tailed phages that infect the bacterial family Enterobacteriaceae. Virology (2014) 1.87
Acinetobacter bacteriocin typing. J Hosp Infect (1986) 1.61
Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus. Environ Microbiol (2007) 1.58
A programmed translational frameshift is required for the synthesis of a bacteriophage lambda tail assembly protein. J Mol Biol (1993) 1.54
Prokaryote viruses studied by electron microscopy. Arch Virol (2012) 1.47
Genetic basis of antibiotic resistance in pathogenic Acinetobacter species. IUBMB Life (2011) 1.47
Enumeration of bacteriophages by double agar overlay plaque assay. Methods Mol Biol (2009) 1.45
Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2015). Arch Virol (2015) 1.45
Bacteriophage receptors, mechanisms of phage adsorption and penetration into host cell. Pol J Microbiol (2010) 1.45
Genomic analysis of multiple Roseophage SIO1 strains. Environ Microbiol (2009) 1.35
Muralytic activity and modular structure of the endolysins of Pseudomonas aeruginosa bacteriophages phiKZ and EL. Mol Microbiol (2007) 1.34
Lysis from without. Bacteriophage (2011) 1.20
MazG, a nucleoside triphosphate pyrophosphohydrolase, interacts with Era, an essential GTPase in Escherichia coli. J Bacteriol (2002) 1.20
Resistance to disinfectants in epidemiologically defined clinical isolates of Acinetobacter baumannii. J Hosp Infect (2007) 1.16
The crystal structure of bacteriophage HK97 gp6: defining a large family of head-tail connector proteins. J Mol Biol (2009) 1.07
The role of interactions between phage and bacterial proteins within the infected cell: a diverse and puzzling interactome. Environ Microbiol (2009) 1.07
Mycobacteriophage L5 infection of Mycobacterium bovis BCG: implications for phage genetics in the slow-growing mycobacteria. Mol Microbiol (1997) 1.04
The solution structure of the bacteriophage lambda head-tail joining protein, gpFII. J Mol Biol (2002) 1.02
Comparative analysis of two phenotypically-similar but genomically-distinct Burkholderia cenocepacia-specific bacteriophages. BMC Genomics (2012) 1.01
Evidence for the intense exchange of MazG in marine cyanophages by horizontal gene transfer. PLoS One (2008) 1.01
Programmed translational frameshift in the bacteriophage P2 FETUD tail gene operon. J Bacteriol (2002) 0.97
Antibiotic modulation of capsular exopolysaccharide and virulence in Acinetobacter baumannii. PLoS Pathog (2015) 0.93
Characterization of lytic Pseudomonas aeruginosa bacteriophages via biological properties and genomic sequences. Appl Microbiol Biotechnol (2012) 0.88
Integration of genomic and proteomic analyses in the classification of the Siphoviridae family. Virology (2014) 0.88
Retention of virulence following adaptation to colistin in Acinetobacter baumannii reflects the mechanism of resistance. J Antimicrob Chemother (2015) 0.88
Systematic identification of hypothetical bacteriophage proteins targeting key protein complexes of Pseudomonas aeruginosa. J Proteome Res (2014) 0.86
Crystal structure of pb9, the distal tail protein of bacteriophage T5: a conserved structural motif among all siphophages. J Virol (2013) 0.86
Receptor diversity and host interaction of bacteriophages infecting Salmonella enterica serovar Typhimurium. PLoS One (2012) 0.85
Dark Matter of the Biosphere: the Amazing World of Bacteriophage Diversity. J Virol (2015) 0.84
Functional elucidation of antibacterial phage ORFans targeting Pseudomonas aeruginosa. Cell Microbiol (2014) 0.83
Calcium controls phage T5 infection at the level of the Escherichia coli cytoplasmic membrane. FEBS Lett (1995) 0.82
A conserved spiral structure for highly diverged phage tail assembly chaperones. J Mol Biol (2013) 0.81
Software-based analysis of bacteriophage genomes, physical ends, and packaging strategies. BMC Genomics (2016) 0.81
Solution structure of gp17 from the Siphoviridae bacteriophage SPP1: insights into its role in virion assembly. Proteins (2011) 0.80
The isolation and characterization of two Stenotrophomonas maltophilia bacteriophages capable of cross-taxonomic order infectivity. BMC Genomics (2015) 0.78
Antibacterial phage ORFans of Pseudomonas aeruginosa phage LUZ24 reveal a novel MvaT inhibiting protein. Front Microbiol (2015) 0.78
Structural elucidation of a novel mechanism for the bacteriophage-based inhibition of the RNA degradosome. Elife (2016) 0.78
Investigating the requirement for calcium during lactococcal phage infection. Int J Food Microbiol (2015) 0.78
Effect of calcium ions on the infection of Bacillus subtilis by bacteriophage SF 6. J Gen Virol (1979) 0.78
Genome Sequence of vB_AbaS_TRS1, a Viable Prophage Isolated from Acinetobacter baumannii Strain A118. Genome Announc (2016) 0.76
Complete Genome Sequences of Five Bacteriophages That Infect Rhodobacter capsulatus. Genome Announc (2016) 0.75
Complete genome sequence of the siphoviral bacteriophage Βϕ-R3177, which lyses an OXA-66-producing carbapenem-resistant Acinetobacter baumannii isolate. Arch Virol (2015) 0.75