Neutralism and selectionism face up to DNA data.

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Published in Trends Genet on April 01, 1994

Authors

J F Brookfield1, P M Sharp

Author Affiliations

1: Department of Genetics, University of Nottingham, Queens Medical Centre, UK.

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CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene (1988) 42.41

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Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc Natl Acad Sci U S A (1987) 10.66

AIDS as a zoonosis: scientific and public health implications. Science (2000) 8.28

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Mutation rates differ among regions of the mammalian genome. Nature (1989) 7.63

Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proc Natl Acad Sci U S A (1989) 6.99

HIV-1 nomenclature proposal. Science (2000) 6.61

Recombination in HIV-1. Nature (1995) 5.72

Codon usage in regulatory genes in Escherichia coli does not reflect selection for 'rare' codons. Nucleic Acids Res (1986) 5.68

An evolutionary perspective on synonymous codon usage in unicellular organisms. J Mol Evol (1986) 5.05

ERIC sequences: a novel family of repetitive elements in the genomes of Escherichia coli, Salmonella typhimurium and other enterobacteria. Mol Microbiol (1991) 4.93

An evaluation of the molecular clock hypothesis using mammalian DNA sequences. J Mol Evol (1987) 4.82

"Silent" sites in Drosophila genes are not neutral: evidence of selection among synonymous codons. Mol Biol Evol (1988) 4.81

Evidence for two independent domestications of cattle. Proc Natl Acad Sci U S A (1994) 4.70

A simple new method for estimating null allele frequency from heterozygote deficiency. Mol Ecol (1996) 4.60

Molecular cloning and analysis of functional envelope genes from human immunodeficiency virus type 1 sequence subtypes A through G. The WHO and NIAID Networks for HIV Isolation and Characterization. J Virol (1996) 4.12

Human infection by genetically diverse SIVSM-related HIV-2 in west Africa. Nature (1992) 4.11

Recombination in AIDS viruses. J Mol Evol (1995) 3.94

The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin. J Virol (1996) 3.82

An African HIV-1 sequence from 1959 and implications for the origin of the epidemic. Nature (1998) 3.69

A comprehensive panel of near-full-length clones and reference sequences for non-subtype B isolates of human immunodeficiency virus type 1. J Virol (1998) 3.65

Rates and dates of divergence between AIDS virus nucleotide sequences. Mol Biol Evol (1988) 3.47

Molecular phylogeny of Rodentia, Lagomorpha, Primates, Artiodactyla, and Carnivora and molecular clocks. Proc Natl Acad Sci U S A (1990) 3.23

Synonymous codon usage in Bacillus subtilis reflects both translational selection and mutational biases. Nucleic Acids Res (1987) 3.23

Mosaic genome structure of simian immunodeficiency virus from west African green monkeys. EMBO J (1994) 3.19

Mammalian gene evolution: nucleotide sequence divergence between mouse and rat. J Mol Evol (1993) 2.97

Complete nucleotide sequence, genome organization, and biological properties of human immunodeficiency virus type 1 in vivo: evidence for limited defectiveness and complementation. J Virol (1992) 2.86

Nuclear import and cell cycle arrest functions of the HIV-1 Vpr protein are encoded by two separate genes in HIV-2/SIV(SM). EMBO J (1996) 2.84

Palindrome-induced deletion in enterobacterial repetitive sequences. Mol Microbiol (1996) 2.75

Codon usage in Caenorhabditis elegans: delineation of translational selection and mutational biases. Nucleic Acids Res (1994) 2.58

Synonymous nucleotide substitution rates in mammalian genes: implications for the molecular clock and the relationship of mammalian orders. Proc Natl Acad Sci U S A (1991) 2.25

Selection pressures on codon usage in the complete genome of bacteriophage T7. J Mol Evol (1985) 2.08

In search of molecular darwinism. Nature (1997) 2.08

Genetic diversity of HIV-1: the moving target. AIDS (2000) 2.08

Chromosomal location effects on gene sequence evolution in mammals. Curr Biol (1999) 2.02

Genetic variation of HIV type 1 in four World Health Organization-sponsored vaccine evaluation sites: generation of functional envelope (glycoprotein 160) clones representative of sequence subtypes A, B, C, and E. WHO Network for HIV Isolation and Characterization. AIDS Res Hum Retroviruses (1994) 1.97

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Molecular population genetics of Escherichia coli: DNA sequence diversity at the celC, crr, and gutB loci of natural isolates. Mol Biol Evol (1992) 1.86

A molecular clone of HIV-1 tropic and cytopathic for human and chimpanzee lymphocytes. Virology (1993) 1.83

Evidence for a high frequency of simultaneous double-nucleotide substitutions. Science (2000) 1.80

Characterization of a novel simian immunodeficiency virus (SIV) from L'Hoest monkeys (Cercopithecus l'hoesti): implications for the origins of SIVmnd and other primate lentiviruses. J Virol (1999) 1.75

Simian immunodeficiency virus (SIV) from sun-tailed monkeys (Cercopithecus solatus): evidence for host-dependent evolution of SIV within the C. lhoesti superspecies. J Virol (1999) 1.72

Does the 'non-coding' strand code? Nucleic Acids Res (1985) 1.71

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Gene acquisition in HIV and SIV. Nature (1996) 1.51

Evolution of the recA gene and the molecular phylogeny of bacteria. J Mol Evol (1993) 1.50

Ubiquitin genes as a paradigm of concerted evolution of tandem repeats. J Mol Evol (1987) 1.47

Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases. Nucleic Acids Res (1999) 1.47

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Identification of functional open reading frames in chloroplast genomes. Gene (1988) 1.36

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An isolate of human immunodeficiency virus type 1 originally classified as subtype I represents a complex mosaic comprising three different group M subtypes (A, G, and I). J Virol (1998) 1.26

Evolution of codon usage patterns: the extent and nature of divergence between Candida albicans and Saccharomyces cerevisiae. Nucleic Acids Res (1992) 1.25

Structure of apolipoprotein B-100 of human low density lipoproteins. Arteriosclerosis (1989) 1.24

Vacuolating cytotoxin (vacA) alleles of Helicobacter pylori comprise two geographically widespread types, m1 and m2, and have evolved through limited recombination. Curr Microbiol (1999) 1.23

Insertions within ERIC sequences. Mol Microbiol (1997) 1.23

Codon usage and base composition in Rickettsia prowazekii. J Mol Evol (1996) 1.22

Evolution of the serum amyloid A (SAA) protein superfamily. Genomics (1994) 1.21

Normal human bronchial immunoglobulins and proteins: effects of cigarette smoking. Am Rev Respir Dis (1977) 1.21

Population genetics models of transposable elements. Genetica (1997) 1.21

Systematic base composition variation around the genome of Mycoplasma genitalium, but not Mycoplasma pneumoniae. Mol Microbiol (1997) 1.19

Patterns of genomic sequence diversity among their simian immunodeficiency viruses suggest that L'Hoest monkeys (Cercopithecus lhoesti) are a natural lentivirus reservoir. J Virol (2000) 1.17

Understanding the origins of AIDS viruses. Nature (1988) 1.15

CODONS: a microcomputer program for codon usage analysis. J Hered (1992) 1.10

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Malarial proteinase? Nature (1989) 1.07

TT virus sequence heterogeneity in vivo: evidence for co-infection with multiple genetic types. J Gen Virol (1999) 1.02

Comparative analysis of the pC194 group of rolling circle plasmids. Plasmid (1993) 1.02

HIV-1 sequence subtype D in the United States. AIDS Res Hum Retroviruses (1994) 1.00

Evolution of human polyomavirus JC. J Gen Virol (2000) 0.99

G+C content variation along and among Saccharomyces cerevisiae chromosomes. Mol Biol Evol (1999) 0.98

Genetic engineering of extracellular enzyme systems of Bacilli. Ann N Y Acad Sci (1986) 0.98

Evidence that mutation patterns vary among Drosophila transposable elements. J Mol Biol (1989) 0.97

Reconstruction of phylogenetic trees and estimation of divergence times under nonconstant rates of evolution. Cold Spring Harb Symp Quant Biol (1987) 0.95

GCWIND: a microcomputer program for identifying open reading frames according to codon positional G+C content. Comput Appl Biosci (1992) 0.94

Amikacin (BB-K8) treatment of multiple-drug resistant Proteus infections. Antimicrob Agents Chemother (1974) 0.94

What can AIDS virus codon usage tell us? Nature (1986) 0.94

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Synonymous codon usage in Kluyveromyces lactis. Yeast (1993) 0.88

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Genetic typing of HIV-2 from a Senegalese/German heterosexual transmission. AIDS Res Hum Retroviruses (1993) 0.88

The core 2 beta-1,6-N-acetylglucosaminyltransferase-mucin encoded by bovine herpesvirus 4 was acquired from an ancestor of the African buffalo. J Virol (2003) 0.88

Genetic variants of human T-lymphotrophic virus type II in American Indian groups. Virology (1996) 0.85

Synonymous codon usage in Cryptosporidium parvum: identification of two distinct trends among genes. Int J Parasitol (2001) 0.83

A case of mixed anaerobic infection of the jaw. J Oral Surg (1974) 0.81

Corynebacterium glutamicum arginyl-tRNA synthetase. Mol Microbiol (1993) 0.81

Identification of a novel member of the pentraxin family in Xenopus laevis. Proc Biol Sci (1993) 0.80

Mitochondrial DNA sequence divergence in the Melanogaster and oriental species subgroups of Drosophila. J Mol Evol (1991) 0.80

Structure, expression, and evolution of guinea pig serum amyloid P component and C-reactive protein. J Biochem (1993) 0.77

Human evolution. Y-chromosome clues to human ancestry. Curr Biol (1995) 0.76

An unusual cluster of babies with Down's syndrome--was it caused by the Windscale fire? Br Med J (Clin Res Ed) (1984) 0.76

Heterosis × nutrition interaction in Drosophila melanogaster. Theor Appl Genet (1988) 0.75

Gram negative bacilli in sputum. Rocky Mt Med J (1977) 0.75